X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=mussa.git;a=blobdiff_plain;f=alg%2Fglsequence.cpp;h=eb6cfe94574b49496dea22ca11e8498a5585f377;hp=17fb561c830c5cf3fc241a01e8de2353c4cc8691;hb=8b38b5bc63e5c62983d0814aa75d3f88b9116e49;hpb=4b9dd885cdfef6d73c82bae5f112a063588766a9

diff --git a/alg/glsequence.cpp b/alg/glsequence.cpp
index 17fb561..eb6cfe9 100644
--- a/alg/glsequence.cpp
+++ b/alg/glsequence.cpp
@@ -257,7 +257,7 @@ void GlSequence::draw_annotations(GLfloat left, GLfloat right) const
   // draw annotations
   GLfloat annotation_z = z() + 10.0;
   const std::list<annot>& annots = Sequence::annotations();
-  const std::list<motif>& motifs = Sequence::motifs();
+  const MotifList& motifs = Sequence::motifs();
   for (std::list<annot>::const_iterator annot_itor = annots.begin();
        annot_itor != annots.end();
        ++annot_itor)
@@ -267,7 +267,7 @@ void GlSequence::draw_annotations(GLfloat left, GLfloat right) const
              height(), annotation_z);
   }
   // if motifs?
-  for (std::list<motif>::const_iterator motifs_itor = motifs.begin();
+  for (MotifList::const_iterator motifs_itor = motifs.begin();
        motifs_itor != motifs.end();
        ++motifs_itor)
   {
@@ -275,7 +275,6 @@ void GlSequence::draw_annotations(GLfloat left, GLfloat right) const
     draw_box(left, right, x()+motifs_itor->begin, x()+motifs_itor->end, 
              height(), annotation_z+1.0);
   }
-
 }
 
 // this way of drawing characters, came from the red open gl book