X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=mussa.git;a=blobdiff_plain;f=alg%2Fglsequence.hpp;h=6f16a199e8c747cd89146316883a934ce8d51d42;hp=b772cd2fa75e77510e1c2128fd2f5af5db4f06d9;hb=3c5e9d09704b35421555398fe79bb50b4218d615;hpb=55f0a3e9612b3e1df2c588682d7f605203eab421

diff --git a/alg/glsequence.hpp b/alg/glsequence.hpp
index b772cd2..6f16a19 100644
--- a/alg/glsequence.hpp
+++ b/alg/glsequence.hpp
@@ -37,6 +37,14 @@ public:
   
   //! search through sequence and add an annotation highlighting all the non AGCT characters
   void add_annotations_for_defined_sequence(Drawable::draw_func_ptr draw=0);
+  /**!search through our annotations and set the draw function for a particular "type"
+   * this is really a temporary solution to configuring annotation display styles
+   */
+  void update_annotation_draw_function(
+         std::string type, 
+         Drawable::draw_func_ptr draw, 
+         ColorRef color
+       );
   //! set our starting x (horizontal) coordinate
   void setX(float x);
   //! get our starting x (horizontal) coordinate
@@ -116,10 +124,12 @@ protected:
   const GLfloat char_pix_per_world_unit;
 
   //! initalize a SeqSpanRef covering start, count
-  SeqSpanRef make_undefined_sequence_annotation(
+  SeqSpanRef make_drawable_annotation(
     Drawable::draw_func_ptr draw,
+    std::string name,
     size_type start,
-    size_type count);
+    size_type count,
+    ColorRef color);
 
   //! draw sequence as a bar
   void draw_track(GLfloat, GLfloat) const;