X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=mussa.git;a=blobdiff_plain;f=alg%2Fmussa.cpp;h=0b93e99d24da3ec3e543e3e0e5cde8ad35678cef;hp=b538eccf0946bc8f992c62ea8cb81f8b6269c550;hb=de84c0a72c8d284e3d124d38699ac065ffe37e3c;hpb=38969cafcdba2b1922452e3255c91dedd178c71c

diff --git a/alg/mussa.cpp b/alg/mussa.cpp
index b538ecc..0b93e99 100644
--- a/alg/mussa.cpp
+++ b/alg/mussa.cpp
@@ -198,11 +198,13 @@ void
 Mussa::set_soft_threshold(int new_threshold)
 {
   if (new_threshold < threshold) {
-    soft_thres = threshold;
+    new_threshold = threshold;
   } else if (new_threshold > window) {
-    soft_thres = window; 
-  } else {
+    new_threshold = window; 
+  }
+  if (soft_thres != new_threshold) {
     soft_thres = new_threshold;
+    nway();
   }
 }
 
@@ -375,10 +377,6 @@ void Mussa::load_sequence(fs::path seq_file, fs::path annot_file,
   set_dirty(true);
 }
 
-void Mussa::load_mupa_file(std::string para_file_path) {
-  load_mupa_file(boost::filesystem::path(para_file_path));
-}
-
 void
 Mussa::load_mupa_file(fs::path para_file_path)
 {