X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=mussa.git;a=blobdiff_plain;f=alg%2Fmussa.cpp;h=f75290c58705c68ea8e7ccb152da253fde976cbb;hp=4b96d1b4d115a6f12915d1b3fd5a1d082d43212e;hb=8b38b5bc63e5c62983d0814aa75d3f88b9116e49;hpb=4b9dd885cdfef6d73c82bae5f112a063588766a9

diff --git a/alg/mussa.cpp b/alg/mussa.cpp
index 4b96d1b..f75290c 100644
--- a/alg/mussa.cpp
+++ b/alg/mussa.cpp
@@ -835,7 +835,7 @@ void Mussa::update_sequences_motifs()
 {
   // once we've loaded all the motifs from the file, 
   // lets attach them to the sequences
-  for(vector<boost::shared_ptr<Sequence> >::iterator seq_i = the_seqs.begin();
+  for(vector<SequenceRef >::iterator seq_i = the_seqs.begin();
       seq_i != the_seqs.end();
       ++seq_i)
   {