X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=mussa.git;a=blobdiff_plain;f=alg%2Fsequence.hpp;h=17149415c622c14899c2a6b8f8959c01db36906d;hp=d476dfef2b9a3347a9706a57d295073c32c8f663;hb=15f9eb9d7ba5ffe32cbe7bc67a9d85b714c27871;hpb=9d76ff624ae315a1262d6ceba1faeb68484ebd85

diff --git a/alg/sequence.hpp b/alg/sequence.hpp
index d476dfe..1714941 100644
--- a/alg/sequence.hpp
+++ b/alg/sequence.hpp
@@ -228,6 +228,7 @@ public:
   //! annotate the current sequence with other sequences
   void find_sequences(std::list<Sequence>::iterator start, 
 		      std::list<Sequence>::iterator end);
+  SeqSpanRef seqspan() { return seq; }
   
   void save(boost::filesystem::fstream &save_file);
   void load_museq(boost::filesystem::path load_file_path, int seq_num);