X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=mussa.git;a=blobdiff_plain;f=alg%2Ftest%2Ftest_flp.cpp;h=54aa76a9ad18d6495ae01c77cf328f4a2c4cc05f;hp=cc8500b16b8aabfa9cfb2eea6cf3f9b7dd5734eb;hb=HEAD;hpb=2a85276d85824ce48b938178dc22ccab2e7ab1fd

diff --git a/alg/test/test_flp.cpp b/alg/test/test_flp.cpp
index cc8500b..54aa76a 100644
--- a/alg/test/test_flp.cpp
+++ b/alg/test/test_flp.cpp
@@ -1,7 +1,10 @@
+#define BOOST_TEST_DYN_LINK
+#define BOOST_TEST_MODULE test_flp
+#include <boost/test/auto_unit_test.hpp>
+
 #include <iostream>
 #include <list>
 
-#include <boost/test/auto_unit_test.hpp>
 #include <boost/filesystem/operations.hpp>
 #include <boost/filesystem/path.hpp>
 namespace fs = boost::filesystem;
@@ -17,7 +20,13 @@ BOOST_AUTO_TEST_CASE( flp_simple )
 {
   FLPs f;
   f.setup(5, 4);
+  // when we first setup progress should be equal to -1 
+  // aka FLPs::seqcomp_not_running 
+  BOOST_CHECK_EQUAL( f.progress(), -1 );
   f.seqcomp("AAGGTAAGGT", "AAGGTAAGGT", false);
+  // now that we're done we should be equal to not running again.
+  // yeah it'd be nice to make a thread test
+  BOOST_CHECK_EQUAL( f.progress(), -1 );
   
   // are the match_locations correct?
   for (int i=0; i != f.size(); i++)
@@ -82,13 +91,13 @@ BOOST_AUTO_TEST_CASE( flp_reverse_compliment )
   Sequence s1("AAAATTTT");
   Sequence s2("AACAGGGG");
   f1.setup(4,3);
-  f1.seqcomp(s1.get_seq(), s2.get_seq(), false);
-  f1.seqcomp(s1.get_seq(), s2.rev_comp(), true);
+  f1.seqcomp(s1, s2, false);
+  f1.seqcomp(s1, s2.rev_comp(), true);
 
   FLPs f2;
   f2.setup(4,3);
-  f2.seqcomp(s1.get_seq(), s2.rev_comp(), true);
-  f2.seqcomp(s1.get_seq(), s2.get_seq(), false);
+  f2.seqcomp(s1, s2.rev_comp(), true);
+  f2.seqcomp(s1, s2, false);
 
   // The order of doing the reverse compliment search shouldn't matter
   // when we're using exactly the same sequence