X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=mussa.git;a=blobdiff_plain;f=alg%2Ftest%2Ftest_glsequence.cpp;h=29bbf34839a171bfeeb5bd9312d0681ec210297a;hp=37b76ee06f2fe65fe322b871ce0b5f2e23818e74;hb=97498410e1fc5c39eac0282a6620b8fcb0f02ff3;hpb=b9755e1974201ff513c66b0fd684bde330c6fff6

diff --git a/alg/test/test_glsequence.cpp b/alg/test/test_glsequence.cpp
index 37b76ee..29bbf34 100644
--- a/alg/test/test_glsequence.cpp
+++ b/alg/test/test_glsequence.cpp
@@ -1,5 +1,6 @@
-#define BOOST_AUTO_TEST_MAIN
-#include <boost/test/auto_unit_test.hpp>
+#define BOOST_TEST_DYN_LINK
+#define BOOST_TEST_MODULE test_glsequence
+#include <boost/test/unit_test.hpp>
 #include <boost/test/floating_point_comparison.hpp>
 #include <boost/shared_ptr.hpp>
 
@@ -14,7 +15,6 @@ using namespace std;
 BOOST_AUTO_TEST_CASE ( glsequence_operator_assignment )
 {
   boost::shared_ptr<AnnotationColors> cm(new AnnotationColors);
-  // I don't trust my operator= hack so lets make sure it works.
   string s0("AAGGCCTT");
   string s1("TTGGCCAA");
   Sequence seq0(s0);
@@ -32,6 +32,36 @@ BOOST_AUTO_TEST_CASE ( glsequence_operator_assignment )
   BOOST_CHECK( glseq0.get_sequence() == s1 );
 }
 
+BOOST_AUTO_TEST_CASE( glsequence_copy_constructor )
+{
+  boost::shared_ptr<AnnotationColors> cm(new AnnotationColors);
+  string s0("AAAAAAGGGGGG");
+
+  GlSequenceRef glsp0(new GlSequence(s0, cm));
+  glsp0->setY(100.0);
+  BOOST_CHECK_EQUAL(glsp0->get_sequence(), s0);
+  BOOST_CHECK_EQUAL(glsp0->y(), 100.0);
+  
+  GlSequenceRef glsp0ref(glsp0);
+  GlSequenceRef glsp0copy(new GlSequence(glsp0));
+  BOOST_CHECK_EQUAL(glsp0->get_sequence(), s0);
+  BOOST_CHECK_EQUAL(glsp0->y(), 100.0);
+  BOOST_CHECK_EQUAL(glsp0ref->get_sequence(), s0);
+  BOOST_CHECK_EQUAL(glsp0ref->y(), 100.0);  
+  BOOST_CHECK_EQUAL(glsp0copy->get_sequence(), s0);
+  BOOST_CHECK_EQUAL(glsp0copy->y(), 100.0);
+  
+  glsp0ref->setY(50.0);
+  BOOST_CHECK_EQUAL(glsp0->y(), 50.0);
+  BOOST_CHECK_EQUAL(glsp0ref->y(), 50.0);  
+  BOOST_CHECK_EQUAL(glsp0copy->y(), 100.0);
+  
+  glsp0copy->setY(75.0);
+  BOOST_CHECK_EQUAL(glsp0->y(), 50.0);
+  BOOST_CHECK_EQUAL(glsp0ref->y(), 50.0);  
+  BOOST_CHECK_EQUAL(glsp0copy->y(), 75.0);
+}
+
 BOOST_AUTO_TEST_CASE( glsequence_color )
 {
   boost::shared_ptr<AnnotationColors> cm(new AnnotationColors);
@@ -45,6 +75,50 @@ BOOST_AUTO_TEST_CASE( glsequence_color )
   BOOST_CHECK_EQUAL( *(s.color()), *c );
 }
 
+BOOST_AUTO_TEST_CASE( glsequence_find_real_sequence )
+{
+  boost::shared_ptr<AnnotationColors> cm(new AnnotationColors);
+  GlSequence s("AAAAAAAAAANNNNNANNA", cm);
+  //            0123456789012345678
+  s.add_annotations_for_defined_sequence();
+  
+  BOOST_CHECK_EQUAL(s.annotations().size(), 3);
+  std::vector<SeqSpanRef> annot(s.annotations().begin(), s.annotations().end());
+  BOOST_CHECK_EQUAL(annot[0]->start(), 0);
+  BOOST_CHECK_EQUAL(annot[0]->stop(), 10);
+  BOOST_CHECK_EQUAL(annot[1]->start(), 15);
+  BOOST_CHECK_EQUAL(annot[1]->size(), 1);
+  BOOST_CHECK_EQUAL(annot[2]->start(), 18);
+  BOOST_CHECK_EQUAL(annot[2]->size(), 1);
+}
+
+void dummy_draw_func(SeqSpanRef ref, float l, float r)
+{
+}
+  
+BOOST_AUTO_TEST_CASE( glsequence_set_annotation_drawfunc_by_type )
+{
+  ColorRef default_color(new Color(1.0, 0.0, 0.0));
+  boost::shared_ptr<AnnotationColors> cm(new AnnotationColors);
+  GlSequence s("AAAAGGGGNNNNTTTTCCC", cm);
+  //            0123456789012345678
+  s.add_annotation("Aname", "value", 0, 4);
+  s.add_annotation("Gname", "value", 4, 4);
+  s.add_annotation("Tname", "gene", 12, 4);
+  s.update_annotation_draw_function("gene", dummy_draw_func, default_color);
+
+  BOOST_CHECK_EQUAL(s.annotations().size(), 3);
+  std::vector<SeqSpanRef> annot(s.annotations().begin(), s.annotations().end());
+  // the two not updated annotations shouldn't have a drawable attached to them yet 
+  BOOST_CHECK( not annot[0]->drawable());
+  BOOST_CHECK( not annot[1]->drawable());
+  // the annotation updated must be drawable
+  BOOST_REQUIRE(annot[2]->drawable());
+  // and it must have the right draw function
+  BOOST_CHECK_EQUAL(annot[2]->drawable()->drawFunction(), dummy_draw_func);
+  BOOST_CHECK_EQUAL(annot[2]->drawable()->color(), default_color);
+}
+
 BOOST_AUTO_TEST_CASE( glsequence_renderable )
 {
   boost::shared_ptr<AnnotationColors> cm(new AnnotationColors);
@@ -201,4 +275,4 @@ BOOST_AUTO_TEST_CASE ( shared_ptr_test )
   BOOST_CHECK_EQUAL(seq0.use_count(), 1);
   BOOST_CHECK_EQUAL(seq1.use_count(), 1);
 }
-*/
\ No newline at end of file
+*/