X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=mussa.git;a=blobdiff_plain;f=alg%2Ftest%2Ftest_sequence.cpp;h=921c5ef7aa2437a177b6f8094279ccca50d71441;hp=38852a5d6f90096ea17944374e25173845656af7;hb=8b38b5bc63e5c62983d0814aa75d3f88b9116e49;hpb=4b9dd885cdfef6d73c82bae5f112a063588766a9

diff --git a/alg/test/test_sequence.cpp b/alg/test/test_sequence.cpp
index 38852a5..921c5ef 100644
--- a/alg/test/test_sequence.cpp
+++ b/alg/test/test_sequence.cpp
@@ -33,6 +33,24 @@ BOOST_AUTO_TEST_CASE( sequence_copy_constructor )
   BOOST_CHECK_EQUAL(s->get_species(), "foo");
   BOOST_CHECK_EQUAL(c->get_species(), "bar");
 }
+
+BOOST_AUTO_TEST_CASE( sequence_copy_constructor_copy_motifs )
+{
+  SequenceRef s(new Sequence("AAAAGGGGAAAA"));
+  s->add_motif("AAGG");
+  BOOST_CHECK_EQUAL(s->motifs().size(), 1);
+  
+  SequenceRef c(new Sequence(s->subseq()));
+  BOOST_CHECK_EQUAL(c->motifs().size(), 1);
+  
+  s->clear_motifs();  
+  BOOST_CHECK_EQUAL(s->motifs().size(), 0);
+  // FIXME: Technically c shouldn't lose its motifs.
+  // FIXME: getting that to work is hard.
+  // BOOST_CHECK_EQUAL(c->motifs().size(), 1);
+  BOOST_CHECK_EQUAL(c->motifs().size(), 0);
+}
+
 BOOST_AUTO_TEST_CASE( sequence_get_sequence )
 {
 	Sequence s;