X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=mussa.git;a=blobdiff_plain;f=mussa_exceptions.hpp;h=9027a079a3b709552cec72272d50834d81476a94;hp=53c167c40147677ba80612927d3609f262411646;hb=4c1d1e263deea85ab00823282c5ca5fc00fa8c26;hpb=ff8d018ab5570a5744e2704a90d48acf3349c501

diff --git a/mussa_exceptions.hpp b/mussa_exceptions.hpp
index 53c167c..9027a07 100644
--- a/mussa_exceptions.hpp
+++ b/mussa_exceptions.hpp
@@ -1,34 +1,115 @@
 #ifndef _MUSSA_EXCEPTIONS_H_
 #define _MUSSA_EXCEPTIONS_H_
 #include <stdexcept>
+#include <boost/filesystem/exception.hpp>
 
-//! Error processing commandline arguments
-class cmdline_error : public std::runtime_error
+//! base mussa exception
+class mussa_error : public std::runtime_error
 {
 public:
-  explicit cmdline_error(const std::string& msg): std::runtime_error(msg) {};
+  explicit mussa_error(const std::string& msg): std::runtime_error(msg) {};
 };
 
+//! Error processing commandline arguments
+class cmdline_error : public mussa_error
+{
+public:
+  explicit cmdline_error(const std::string& msg): mussa_error(msg) {};
+};
+//! Error trying to save 
+class mussa_save_error : public mussa_error
+{
+public:
+  explicit mussa_save_error(const std::string& msg) :
+    mussa_error(msg) {};
+};
 //! Error loading information
-class mussa_load_error : public std::runtime_error
+class mussa_load_error : public mussa_error
 {
 public:
   explicit mussa_load_error(const std::string& msg) : 
-    std::runtime_error(msg) {};
+    mussa_error(msg) {};
+};
+
+//! Error loading sequence
+class sequence_load_error : public mussa_load_error
+{
+public:
+  explicit sequence_load_error(const std::string& msg) :
+    mussa_load_error(msg) {};
+};
+
+// Empty sequence
+class sequence_empty_error : public sequence_load_error 
+{
+public:
+  explicit sequence_empty_error(const std::string& msg) :
+    sequence_load_error(msg) {};
+};
+
+// Empty fasta file
+class sequence_empty_file_error : public sequence_load_error 
+{
+public:
+  explicit sequence_empty_file_error(const std::string& msg) :
+    sequence_load_error(msg) {};
+};
+
+// Empty unrecognized characters
+class sequence_invalid_load_error : public sequence_load_error 
+{
+public:
+  explicit sequence_invalid_load_error(const std::string& msg) :
+    sequence_load_error(msg) {};
+};
+
+//! Error loading sequence annotation
+class annotation_load_error : public sequence_load_error
+{
+public:
+  explicit annotation_load_error(const std::string& msg) :
+    sequence_load_error(msg) {};
 };
 
 //! failure running analysis
-class mussa_analysis_error : public std::runtime_error
+class mussa_analysis_error : public mussa_error
 {
 public:
   explicit mussa_analysis_error(const std::string& msg) : 
-    std::runtime_error(msg) {};
+    mussa_error(msg) {};
+};
+
+//! failure running seqcomp
+class seqcomp_error : public mussa_analysis_error
+{
+public:
+  explicit seqcomp_error(const std::string& msg) : 
+    mussa_analysis_error(msg) {};
 };
 
-class motif_normalize_error : public std::runtime_error
+//! couldn't normalize a motif
+/*
+class motif_normalize_error : public mussa_error
 {
 public:
   explicit motif_normalize_error(const std::string& msg) : 
-    std::runtime_error(msg) {};
+    mussa_error(msg) {};
+};
+*/
+
+//! something went wrong loading a motif  
+class motif_load_error : public mussa_load_error
+{
+public:
+  explicit motif_load_error(const std::string& msg) :
+    mussa_load_error(msg) {};
+};
+
+//! ConservedPath::nextTo had two paths that weren't the same size
+class conserved_path_size_mismatch : public mussa_error
+{
+public:
+  explicit conserved_path_size_mismatch(const std::string& msg) :
+    mussa_error(msg) {};
 };
 #endif