X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=mussa.git;a=blobdiff_plain;f=mussa_exceptions.hpp;h=9027a079a3b709552cec72272d50834d81476a94;hp=9adb5299f58dee677f2633f03488e163e69f91fb;hb=4c1d1e263deea85ab00823282c5ca5fc00fa8c26;hpb=f464cbe60bbb56066a8120a760802b53c398e062

diff --git a/mussa_exceptions.hpp b/mussa_exceptions.hpp
index 9adb529..9027a07 100644
--- a/mussa_exceptions.hpp
+++ b/mussa_exceptions.hpp
@@ -55,6 +55,21 @@ public:
     sequence_load_error(msg) {};
 };
 
+// Empty unrecognized characters
+class sequence_invalid_load_error : public sequence_load_error 
+{
+public:
+  explicit sequence_invalid_load_error(const std::string& msg) :
+    sequence_load_error(msg) {};
+};
+
+//! Error loading sequence annotation
+class annotation_load_error : public sequence_load_error
+{
+public:
+  explicit annotation_load_error(const std::string& msg) :
+    sequence_load_error(msg) {};
+};
 
 //! failure running analysis
 class mussa_analysis_error : public mussa_error
@@ -64,12 +79,31 @@ public:
     mussa_error(msg) {};
 };
 
+//! failure running seqcomp
+class seqcomp_error : public mussa_analysis_error
+{
+public:
+  explicit seqcomp_error(const std::string& msg) : 
+    mussa_analysis_error(msg) {};
+};
+
+//! couldn't normalize a motif
+/*
 class motif_normalize_error : public mussa_error
 {
 public:
   explicit motif_normalize_error(const std::string& msg) : 
     mussa_error(msg) {};
 };
+*/
+
+//! something went wrong loading a motif  
+class motif_load_error : public mussa_load_error
+{
+public:
+  explicit motif_load_error(const std::string& msg) :
+    mussa_load_error(msg) {};
+};
 
 //! ConservedPath::nextTo had two paths that weren't the same size
 class conserved_path_size_mismatch : public mussa_error