X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=mussa.git;a=blobdiff_plain;f=mussa_exceptions.hpp;h=e85b2d98687e5a50304b09cc654c2f8349f1b0f9;hp=bf76e3b946eb0b166bfc4ec1a0175f3c2dd4300c;hb=HEAD;hpb=5af8b13c0f60d0929ab9af8c4208ab3e1fb4fdd2

diff --git a/mussa_exceptions.hpp b/mussa_exceptions.hpp
index bf76e3b..e85b2d9 100644
--- a/mussa_exceptions.hpp
+++ b/mussa_exceptions.hpp
@@ -1,6 +1,7 @@
 #ifndef _MUSSA_EXCEPTIONS_H_
 #define _MUSSA_EXCEPTIONS_H_
 #include <stdexcept>
+#include <boost/filesystem/exception.hpp>
 
 //! base mussa exception
 class mussa_error : public std::runtime_error
@@ -15,7 +16,13 @@ class cmdline_error : public mussa_error
 public:
   explicit cmdline_error(const std::string& msg): mussa_error(msg) {};
 };
-
+//! Error trying to save 
+class mussa_save_error : public mussa_error
+{
+public:
+  explicit mussa_save_error(const std::string& msg) :
+    mussa_error(msg) {};
+};
 //! Error loading information
 class mussa_load_error : public mussa_error
 {
@@ -24,6 +31,69 @@ public:
     mussa_error(msg) {};
 };
 
+//! error doing a key lookup in the annotations class
+class annotations_key_error : public mussa_error {
+public:
+  explicit annotations_key_error(const std::string& msg) : 
+    mussa_error(msg) {};
+};
+
+//! Error loading sequence
+class sequence_load_error : public mussa_load_error
+{
+public:
+  explicit sequence_load_error(const std::string& msg) :
+    mussa_load_error(msg) {};
+};
+
+// Empty sequence
+class sequence_empty_error : public sequence_load_error 
+{
+public:
+  explicit sequence_empty_error(const std::string& msg) :
+    sequence_load_error(msg) {};
+};
+
+// Empty fasta file
+class sequence_empty_file_error : public sequence_load_error 
+{
+public:
+  explicit sequence_empty_file_error(const std::string& msg) :
+    sequence_load_error(msg) {};
+};
+
+// Empty unrecognized characters
+class sequence_invalid_load_error : public sequence_load_error 
+{
+public:
+  explicit sequence_invalid_load_error(const std::string& msg) :
+    sequence_load_error(msg) {};
+};
+
+//! Incomprehensible comparison
+class sequence_invalid_comparison : public mussa_error
+{
+public:
+  explicit sequence_invalid_comparison(const std::string& msg) :
+    mussa_error(msg) {};
+};
+
+//! Invalid strand identifier
+class sequence_invalid_strand : public mussa_error
+{
+public:
+  explicit sequence_invalid_strand(const std::string& msg) :
+    mussa_error(msg) {};
+};
+
+//! Error loading sequence annotation
+class annotation_load_error : public sequence_load_error
+{
+public:
+  explicit annotation_load_error(const std::string& msg) :
+    sequence_load_error(msg) {};
+};
+
 //! failure running analysis
 class mussa_analysis_error : public mussa_error
 {
@@ -32,10 +102,37 @@ public:
     mussa_error(msg) {};
 };
 
+//! failure running seqcomp
+class seqcomp_error : public mussa_analysis_error
+{
+public:
+  explicit seqcomp_error(const std::string& msg) : 
+    mussa_analysis_error(msg) {};
+};
+
+//! couldn't normalize a motif
+/*
 class motif_normalize_error : public mussa_error
 {
 public:
   explicit motif_normalize_error(const std::string& msg) : 
     mussa_error(msg) {};
 };
+*/
+
+//! something went wrong loading a motif  
+class motif_load_error : public mussa_load_error
+{
+public:
+  explicit motif_load_error(const std::string& msg) :
+    mussa_load_error(msg) {};
+};
+
+//! ConservedPath::nextTo had two paths that weren't the same size
+class conserved_path_size_mismatch : public mussa_error
+{
+public:
+  explicit conserved_path_size_mismatch(const std::string& msg) :
+    mussa_error(msg) {};
+};
 #endif