X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=mussa.git;a=blobdiff_plain;f=py%2FCMakeLists.txt;h=dbfdb2d3c4e3ae0974b6063dcbe6e443c532425e;hp=a2466f9f7894226d6b532d8b3eff8261dd0a09f3;hb=HEAD;hpb=7c3bf26770d10c90e1b40c60479114f42a84edf0

diff --git a/py/CMakeLists.txt b/py/CMakeLists.txt
index a2466f9..dbfdb2d 100644
--- a/py/CMakeLists.txt
+++ b/py/CMakeLists.txt
@@ -1,70 +1,90 @@
-FIND_PACKAGE(Boost)
+set(Boost_USE_STATIC_LIBS   OFF)
+set(Boost_USE_MULTITHREADED ON)
+FIND_PACKAGE(Boost 1.34.1 COMPONENTS python filesystem serialization)
 FIND_PACKAGE(OpenGL)
 FIND_PACKAGE(PythonLibs)
 FIND_PACKAGE(PythonInterp)
-SET(QT_DONT_USE_QTGUI 1)
+# SET(QT_DONT_USE_QTGUI 1)
 FIND_PACKAGE(Qt4)
 INCLUDE( ${QT_USE_FILE} )
 
 
-IF(BOOST_PYTHON_LIBRARY)
+IF(Boost_PYTHON_LIBRARY)
   INCLUDE_DIRECTORIES(${PYTHON_INCLUDE_PATH} ${QT_INCLUDES})
   SET(SOURCES 
+        stl_container_adapter.cpp
+        alphabet.cpp
         annot.cpp
         annotation_colors.cpp
+	annotations.cpp
         conserved_path.cpp 
+        drawable.cpp
         flp.cpp
         glsequence.cpp
         module.cpp 
         mussa.cpp
-        # MussaWindow.cpp
         nway_paths.cpp
+        seq_span.cpp
         sequence.cpp
         )
   SET(QUI_SOURCES
     module_qui.cpp
-    MussaWindow.cpp
+    qt.cpp
+    sequence.cpp
+    glsequence.cpp
+    annotation_colors.cpp
+    sequencebrowserwidget.cpp
   )                        
   SET(MUSSA_LIBRARIES
         mussa_core
-        ${BOOST_PYTHON_LIBRARY}
-        ${BOOST_FILESYSTEM_LIBRARY}
-        ${BOOST_SERIALIZATION_LIBRARY}
+        ${Boost_PYTHON_LIBRARY}
+        ${Boost_SYSTEM_LIBRARY}
+        ${Boost_FILESYSTEM_LIBRARY}
+        ${Boost_SERIALIZATION_LIBRARY}
         ${OPENGL_gl_LIBRARY}
-        ${PYTHON_LIBRARIES}
-        optimized ${QT_QTCORE_LIBRARY} 
-        debug ${QT_QTCORE_LIBRARY_DEBUG}
+        ${QT_QTCORE_LIBRARY}
+        #optimized ${QT_QTCORE_LIBRARY_RELEASE}
+        #debug ${QT_QTCORE_LIBRARY_DEBUG}
      )        
-  SET(STATIC_PYTHON_TARGETS "")
-  SET(SHARED_PYTHON_TARGETS "")
-  
+  GET_MUSSA_COMPILE_FLAGS(PY_CFLAGS)
+  GET_MUSSA_LINK_FLAGS(PY_LDFLAGS)
+
+	# configure static core python library  
   ADD_LIBRARY(mussa_py STATIC ${SOURCES})
-  SET(${STATIC_PYTHON_TARGETS} "${${STATIC_PYTHON_TARGETS}} mussa_py")
+  SET_TARGET_PROPERTIES(mussa_py PROPERTIES 
+                        COMPILE_FLAGS "${PY_CFLAGS}"
+                        LINK_FLAGS "${PY_LDFLAGS}")
+
+  # configure core (shared) python module 
   ADD_LIBRARY(mussa MODULE ${SOURCES})
-  SET(${SHARED_PYTHON_TARGETS} "${${SHARED_PYTHON_TARGETS}} mussa")
+  SET_TARGET_PROPERTIES(mussa PROPERTIES 
+                        PREFIX ""
+                        COMPILE_FLAGS "${PY_CFLAGS}"
+                        LINK_FLAGS "${PY_LDFLAGS}")
   TARGET_LINK_LIBRARIES(mussa
                         ${MUSSA_LIBRARIES}
+                        ${PYTHON_LIBRARIES}
                         )
-  ADD_LIBRARY(mussaqui_py STATIC ${QUI_SOURCES})
-  SET(${STATIC_PYTHON_TARGETS} "${${STATIC_PYTHON_TARGETS}} mussaqui_py")  
-  # ADD_LIBRARY(mussaqui MODULE ${QUI_SOURCES})
-  # SET(${SHARED_PYTHON_TARGETS} "${${SHARED_PYTHON_TARGETS}} mussaqui")
-  #TARGET_LINK_LIBRARIES(mussaqui
-  #                      mussa_qui
-  #                      ${MUSSA_LIBRARIES}
-  #                      optimized ${QT_QTGUI_LIBRARY}
-  #                      debug ${QT_QTGUI_LIBRARY_DEBUG}
-  #                      optimized ${QT_QTOPENGL_LIBRARY}
-  #                      debug ${QT_QTOPENGL_LIBRARY_DEBUG}
-  #                     )
-  
-  # don't put the "lib" prefix infront of our shared modules                       
-  SET_TARGET_PROPERTIES(${SHARED_PYTHON_TARGETS}
-                        PROPERTIES
-                        PREFIX ""
+  # configure static gui python library
+  #ADD_LIBRARY(mussaqui_py STATIC ${QUI_SOURCES})
+  #  SET_TARGET_PROPERTIES(mussa_py PROPERTIES 
+  #                        COMPILE_FLAGS "${PY_CFLAGS}"
+  #                        LINK_FLAGS "${PY_LDFLAGS}")
+                        
+  # configure gui (shared) python library
+  ADD_LIBRARY(mussaqui MODULE ${QUI_SOURCES})
+  SET_TARGET_PROPERTIES(mussaqui PROPERTIES 
+                       PREFIX ""
+                       COMPILE_FLAGS "${PY_CFLAGS}"
+                       LINK_FLAGS "${PY_LDFLAGS}")
+  TARGET_LINK_LIBRARIES(mussaqui
+                        mussa_qui
+                        ${MUSSA_LIBRARIES}
+                        ${PYTHON_LIBRARIES}
+                        ${QT_QTGUI_LIBRARY}
+                        ${QT_QTOPENGL_LIBRARY}
                        )
-  GET_MUSSA_COMPILE_FLAGS(PY_CFLAGS)
-  GET_MUSSA_LINK_FLAGS(PY_LDFLAGS)
+  
   SET_SOURCE_FILES_PROPERTIES(
     ${SOURCES}
     ${QUI_SOURCES}
@@ -80,11 +100,15 @@ IF(BOOST_PYTHON_LIBRARY)
 
   IF(PYTHON_EXECUTABLE)
     SET(PYTEST_DIR ${CMAKE_SOURCE_DIR}/py/test/)
+    ADD_TEST(TestAnnotations 
+                     ${PYTHON_EXECUTABLE} ${PYTEST_DIR}/TestAnnotations.py)
+    ADD_TEST(TestSeqSpan ${PYTHON_EXECUTABLE} ${PYTEST_DIR}/TestSeqSpan.py)
     ADD_TEST(TestSequence ${PYTHON_EXECUTABLE} ${PYTEST_DIR}/TestSequence.py)
     ADD_TEST(TestFlp ${PYTHON_EXECUTABLE} ${PYTEST_DIR}/TestFlp.py)
     ADD_TEST(TestMussa ${PYTHON_EXECUTABLE} ${PYTEST_DIR}/TestMussa.py)
   ENDIF(PYTHON_EXECUTABLE)
-ELSE(BOOST_PYTHON_LIBRARY)
-ENDIF(BOOST_PYTHON_LIBRARY)
+ELSE(Boost_PYTHON_LIBRARY)
+  MESSAGE(STATUS "Not building mussa python extension, Boost python not found")
+ENDIF(Boost_PYTHON_LIBRARY)
 
 ADD_SUBDIRECTORY(test)