X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=mussa.git;a=blobdiff_plain;f=qui%2Fseqbrowser%2FSequenceBrowserWidget.cpp;h=7ccf966ab9962ea57cfb663a1ee791c264c5d3a5;hp=c10136ec090c2922029e6366a19beff23f702a53;hb=8b38b5bc63e5c62983d0814aa75d3f88b9116e49;hpb=4b9dd885cdfef6d73c82bae5f112a063588766a9

diff --git a/qui/seqbrowser/SequenceBrowserWidget.cpp b/qui/seqbrowser/SequenceBrowserWidget.cpp
index c10136e..7ccf966 100644
--- a/qui/seqbrowser/SequenceBrowserWidget.cpp
+++ b/qui/seqbrowser/SequenceBrowserWidget.cpp
@@ -70,7 +70,6 @@ QSize SequenceBrowserWidget::sizeHint() const
   return QSize(width, center.height());
 }
 
-
 void SequenceBrowserWidget::clear()
 {
   converted_sequences.clear();
@@ -122,17 +121,17 @@ void SequenceBrowserWidget::copySelectedTracksAsSeqLocation(
 }
 
 void SequenceBrowserWidget::setSequences(
-    const std::vector<boost::shared_ptr<Sequence> >& sequences,
-    boost::shared_ptr<AnnotationColors> cm)
+    const std::vector<SequenceRef >& new_sequences,
+    AnnotationColorsRef cm)
 {
   SequenceBrowser& browser = scrollable_browser->browser();
   clear();
-  for(Mussa::vector_sequence_type::const_iterator seq_i = sequences.begin();
-      seq_i != sequences.end();
+  for(Mussa::vector_sequence_type::const_iterator seq_i = new_sequences.begin();
+      seq_i != new_sequences.end();
       ++seq_i)
   {
     // Blech *(*seq_i) is dereferencing the shared_ptr stored in the iterator.
-    boost::shared_ptr<GlSequence> gs(new GlSequence(*(*seq_i), cm));
+    boost::shared_ptr<GlSequence> gs(new GlSequence(*seq_i, cm));
     converted_sequences.push_back(gs);
     browser.push_sequence(gs);
   }
@@ -142,7 +141,7 @@ void SequenceBrowserWidget::setSequences(
   // connect the text change signals to each other
   SequenceBrowserSidebar::collection left = left_sidebar->descriptions;
   SequenceBrowserSidebar::collection right = right_sidebar->descriptions;
-  for(size_t i = 0; i != sequences.size() and i != right.size(); ++i)
+  for(size_t i = 0; i != new_sequences.size() and i != right.size(); ++i)
   {
     connect(left[i], SIGNAL(nameChanged(const QString &)),
             right[i], SLOT(setName(const QString &)));