From: Diane Trout <diane@caltech.edu>
Date: Tue, 17 Oct 2006 06:46:02 +0000 (+0000)
Subject: force loaded sequence to uppercase
X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=mussa.git;a=commitdiff_plain;h=acfd562fcb25c08ad6d6c57a2b68413fc3811773

force loaded sequence to uppercase
ticket:183
---

diff --git a/alg/sequence.cpp b/alg/sequence.cpp
index e1923c6..3ac4dd0 100644
--- a/alg/sequence.cpp
+++ b/alg/sequence.cpp
@@ -287,7 +287,7 @@ void Sequence::set_filtered_sequence(const std::string &in_seq,
   for(size_type i = 0; i != count; ++i, ++seq_i)
   {
     if (alpha_impl.exists(*seq_i)) {
-      new_seq->append(1, *seq_i);
+      new_seq->append(1, toupper(*seq_i));
     } else {
       new_seq->append(1, 'N');
     }