From: Diane Trout <diane@caltech.edu>
Date: Wed, 9 Aug 2006 00:10:52 +0000 (+0000)
Subject: change from cout to clog in some commented out debugging messages.
X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=mussa.git;a=commitdiff_plain;h=f87b6a2858d447b8047fa36ab93c0e0e33dd5428

change from cout to clog in some commented out debugging messages.
---

diff --git a/alg/mussa.cpp b/alg/mussa.cpp
index 68e7324..95a0a7d 100644
--- a/alg/mussa.cpp
+++ b/alg/mussa.cpp
@@ -594,12 +594,12 @@ Mussa::load(fs::path ana_file)
   vector<FLPs> empty_FLP_vector;
   FLPs dummy_comp;
 
-  //cout << "ana_file name " << ana_file.string() << endl;
+  //clog << "ana_file name " << ana_file.string() << endl;
   analysis_name = ana_path.leaf();
-  //cout << " ana_name " << analysis_name << endl;
+  //clog << " ana_name " << analysis_name << endl;
   file_path_base =  ana_path.branch_path() / analysis_name;
   a_file_path = file_path_base / (analysis_name + ".muway");
-  //cout << " loading museq: " << a_file_path.string() << endl;
+  //clog << " loading museq: " << a_file_path.string() << endl;
   the_paths.load(a_file_path);
   // perhaps this could be more elegent, but at least this'll let
   // us know what our threshold and window sizes were when we load a muway
@@ -615,7 +615,7 @@ Mussa::load(fs::path ana_file)
   for (i = 1; i <= seq_num; i++)
   {
     boost::shared_ptr<Sequence> tmp_seq(new Sequence);
-    //cout << "mussa_class: loading museq frag... " << a_file_path.string() << endl;
+    //clog << "mussa_class: loading museq frag... " << a_file_path.string() << endl;
     tmp_seq->load_museq(a_file_path, i);
     the_seqs.push_back(tmp_seq);
   }
@@ -634,11 +634,11 @@ Mussa::load(fs::path ana_file)
     {
       append_info.str("");
       append_info << analysis_name <<  "_sp_" << i << "v" << i2 << ".flp";
-      //cout << append_info.str() << endl;
+      //clog << append_info.str() << endl;
       a_file_path = file_path_base / append_info.str();
-      //cout << "path " << a_file_path.string() << endl;
+      //clog << "path " << a_file_path.string() << endl;
       all_comps[i][i2].load(a_file_path);
-      //cout << "real size = " << all_comps[i][i2].size() << endl;
+      //clog << "real size = " << all_comps[i][i2].size() << endl;
     }
   }
 }