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Update mussa to build on ubuntu 10.04 with qt 4.6.2 +boost 1.40.0.1
[mussa.git] / alg /
2010-10-18 Diane TroutUpdate mussa to build on ubuntu 10.04 with qt 4.6.2... master tree | commitdiff
2009-11-24 Diane TroutRemove prototype boost serialiation code. tree | commitdiff
2009-11-10 Diane TroutUpdate mussa build scripts to work with Boost 1.40... tree | commitdiff
2008-04-11 Diane TroutI wish I'd stop cutting-n-pasting the name of the class... tree | commitdiff
2008-04-11 Diane TroutExtend the python mussa interface. tree | commitdiff
2008-04-11 Diane TroutsetHeight should have been declaired void instead of... tree | commitdiff
2008-02-15 Diane TroutSwitch to a new FindBoost tree | commitdiff
2007-09-05 Diane Troutbasic wrapping of Annotations tree | commitdiff
2007-09-04 Diane Troutmore work on seq_span tree | commitdiff
2007-08-10 Brandon KingHACKISH: Display chipseq peak window track tree | commitdiff
2007-08-03 Diane Troutremove excess cout call tree | commitdiff
2007-08-03 Diane Troutmake the mupa parser more robust tree | commitdiff
2007-08-03 Diane Troutadd threshold/window flag getter/setters tree | commitdiff
2007-06-29 Diane TroutUse the right return type tree | commitdiff
2007-01-05 Diane Trouttest paircomp::NwayComparison tree | commitdiff
2007-06-23 Diane TroutCatch annotation sequences that don't end with newline tree | commitdiff
2007-06-21 Diane Trouttest annotating a sequence with fasta records in a... tree | commitdiff
2007-05-02 Diane Troutfactor out viewport to display scaling functions tree | commitdiff
2007-04-21 Diane Troutdont draw sequence box when we can see sequence text tree | commitdiff
2007-04-20 Brandon King * New line chars at EOF (missed one) tree | commitdiff
2007-04-20 Brandon KingNew line chars at EOF. tree | commitdiff
2007-04-20 Brandon KingLoad saved muway and set to muways soft threshold. tree | commitdiff
2007-04-19 Diane Troutimprove mupa comment character parsing tree | commitdiff
2007-04-19 Diane Troutmake mupa file loading eol-style insensitive tree | commitdiff
2007-04-18 Brandon KingLoad N sequences in Mussa::load tree | commitdiff
2007-04-16 Diane Troutescape clears a sequence browser selection tree | commitdiff
2007-04-14 Diane Troutdraw a grey background to a track tree | commitdiff
2007-04-14 Diane Troutstore default colors tree | commitdiff
2007-04-13 Diane Troutset annotation draw function by type tree | commitdiff
2007-04-13 Diane TroutMark real sequence instead of Ns tree | commitdiff
2007-04-11 Diane Troutmake the N whiteout a bit bigger tree | commitdiff
2007-04-11 Diane Troutshow where the Ns are tree | commitdiff
2007-04-09 Diane Troutremove unncessary class qualifier tree | commitdiff
2007-04-09 Diane Troutadd function for marking 'N' regions tree | commitdiff
2007-04-09 Diane Troutadd draw function pointer to drawable tree | commitdiff
2007-04-06 Diane Troutremove annot class in favor of SeqSpan tree | commitdiff
2007-04-06 Diane TroutAdd getdefault to Annotations tree | commitdiff
2007-04-04 Diane Troutfix uninitialized pointer tree | commitdiff
2007-04-03 Diane Troutfix problems with motif changes not showing up in seque... tree | commitdiff
2007-03-31 Diane Trouttest motif editor tree | commitdiff
2007-03-30 Diane Troutincorporate drawable and annotations tree | commitdiff
2007-03-30 Diane Troutcreate class to hold drawing information tree | commitdiff
2007-03-30 Diane Troutcreate a metadata holding class tree | commitdiff
2007-03-27 Diane TroutHandle subseq when the parent is on the minus strand tree | commitdiff
2007-03-24 Diane Troutmove strand into seqspan tree | commitdiff
2007-03-21 Diane TroutMissed part of "Store Sequence sequence location in... tree | commitdiff
2007-03-21 Diane TroutMove alphabet type into SeqString tree | commitdiff
2007-03-20 Diane TroutStore Sequence sequence location in a shared_ptr class tree | commitdiff
2007-03-08 Diane Troutadd a useful comment tree | commitdiff
2007-02-20 Diane Troutmore error messages for loading an annotation. tree | commitdiff
2007-02-14 Brandon KingAdded newline char to end of line (remove compile warning) tree | commitdiff
2007-01-05 Diane Troutadd some newlines at the end of some of our files tree | commitdiff
2007-01-04 Diane Troutconditionally build the paircomp tests tree | commitdiff
2007-01-04 Diane Troutpaircomp used the string find_first_not_of tree | commitdiff
2007-01-04 Diane Troutsplit unittests into seperate executables tree | commitdiff
2006-12-14 Diane Troutlen(mussa.paths()) should equal the number of found... tree | commitdiff
2006-12-05 Diane Troutprovide python interpreter for mussa qui via a seperate... tree | commitdiff
2006-11-29 Diane Troutadd python interface to seqcomp tree | commitdiff
2006-11-22 Diane TroutFinish off setting sequence offset user interface tree | commitdiff
2006-11-17 Diane Troutmore fs::native for user supplied paths tree | commitdiff
2006-10-30 Diane Troutinclude filename in unparsable annotation error message tree | commitdiff
2006-10-30 Diane Troutreport filename for invalid fasta files tree | commitdiff
2006-10-28 Diane Troutcompute the correct starting window size tree | commitdiff
2006-10-27 Diane Troutimplement set window state tree | commitdiff
2006-10-26 Diane Troutadd copy sequence as string option tree | commitdiff
2006-10-26 Diane Troutdisplay number of basepairs copied tree | commitdiff
2006-10-20 Diane Troutadd nl to end of 3 files tree | commitdiff
2006-10-20 Diane Troutcopy motifs to a new subanalysis tree | commitdiff
2006-10-19 Diane Troutfix motif loader under release build tree | commitdiff
2006-10-19 Diane TroutSequence::rev_comp works on subsequences tree | commitdiff
2006-10-18 Diane Troutadd to_upper_case to some sequence unittests tree | commitdiff
2006-10-17 Diane Troutbe more forging of user provided file names tree | commitdiff
2006-10-17 Diane Troutremove old code tree | commitdiff
2006-10-17 Diane Troutchanging motifs should make the analysis dirty tree | commitdiff
2006-10-17 Diane Troutforce loaded sequence to uppercase tree | commitdiff
2006-10-17 Diane Troutdon't link against X11 on OS X tree | commitdiff
2006-10-14 Diane Troutdon't seqcomp sequences that are too small tree | commitdiff
2006-10-14 Diane Troutadd operator< to ConservedPath tree | commitdiff
2006-10-13 Brandon KingSave to image fix (ticket:96) tree | commitdiff
2006-10-13 Diane Troutsave motifs with the analysis tree | commitdiff
2006-10-12 Diane Troutbetter glyph offset computation tree | commitdiff
2006-10-12 Diane Troutdoes createLocalAlignment work for a 3 way? tree | commitdiff
2006-10-11 Diane Troutadd Mussa::save_motif() tree | commitdiff
2006-10-11 Diane Troutthrow errors when spirit parsing fails tree | commitdiff
2006-10-11 Diane Trouta title of path("/my/silly/path") doesn't work on windows tree | commitdiff
2006-10-11 Diane Troutuse lines if a quad would be smaller than a pixel tree | commitdiff
2006-10-10 Diane Troutimplement alphabet for sequence tree | commitdiff
2006-10-05 Diane Troutlength 1 segments should be drawn as lines tree | commitdiff
2006-10-05 Diane Troutdraw link lines with a width tree | commitdiff
2006-10-04 Diane Troutadd --motifs tree | commitdiff
2006-10-04 Diane Troutfixes for Mussa::load_motif tree | commitdiff
2006-10-04 Diane Troutcolors should default to being visible tree | commitdiff
2006-10-03 Diane TroutAdd window titles tree | commitdiff
2006-06-15 Diane Troutfix wrong parent for scrollable_browser tree | commitdiff
2006-10-03 Diane TroutDeath to stupid mussa pointers tree | commitdiff
2006-09-19 Diane Troutcatch possible segfault with get_sequence() tree | commitdiff
2006-09-15 Diane Troutuse the loaded analysis path as the default save path tree | commitdiff
2006-09-15 Diane Troutkeep track of a subsequences parent tree | commitdiff
2006-09-15 Diane Troutreport our "start/stop" location on a subsequence tree | commitdiff
2006-09-15 Diane Troutuse an enum instead of a bool for strandedness tree | commitdiff
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MUSSA multi-species alignment tool