From 0cc1f7b0bd3e07a048f0b7847a76ab3dd59e38de Mon Sep 17 00:00:00 2001 From: Brandon King Date: Wed, 18 Oct 2006 18:04:42 +0000 Subject: [PATCH] Mussa Manual: save on close & save motif default behavior * Wrote the "Save on close" section. (ticket:189) * Documented default motif list extension, when not provided by user. (ticket:190) * Removed old "features to implement". --- doc/manual/mussagl_manual.rst | 20 +++++++++++--------- 1 file changed, 11 insertions(+), 9 deletions(-) diff --git a/doc/manual/mussagl_manual.rst b/doc/manual/mussagl_manual.rst index 23f08b9..015296b 100644 --- a/doc/manual/mussagl_manual.rst +++ b/doc/manual/mussagl_manual.rst @@ -5,14 +5,14 @@ Mussagl Manual Brandon W. King --------------- -Last updated: Oct 17th, 2006 +Last updated: Oct 18th, 2006 Updated to Mussagl build: (In process to 424) .. Things to add * New features / change log - * Comment out anything isn't implemented yet. + * (DONE) Comment out anything isn't implemented yet. * (DONE) List of features that will be implemented in the future. * Look into the homology mapping of UCSC. * Add toggle to genomes. @@ -54,11 +54,6 @@ Change Log Features to be Implemented -------------------------- - * Motif editor supporting more than 10 motifs - (Status: http://woldlab.caltech.edu/cgi-bin/mussa/ticket/122) - * Save motifs from Mussagl - (Status: http://woldlab.caltech.edu/cgi-bin/mussa/ticket/133) - For an up-to-date list of features to be implemented visit: http://woldlab.caltech.edu/cgi-bin/mussa/roadmap @@ -760,7 +755,12 @@ Saving Save on Close ~~~~~~~~~~~~~ -FIXME: Write this. +When ever you create a new analysis or make a change such as +adding/editing a motif or changing a species name, an asterisk (*) +will appear in the title of the window showing that there are changes +that have not been saved. If you close a Mussa window without saving +changes, Mussa will ask you if you would like to save the changes that +have been made. Save Analysis ~~~~~~~~~~~~~ @@ -833,7 +833,9 @@ Motifs from the `Motif Dialog`_ can be saved to file for use with other analyses. If you just want your motifs to be saved with your analysis, see the `save analysis`_ section for details. -To save a motif list, select **File > Save Motifs** menu option. +To save a motif list, select **File > Save Motifs** menu option. By +default, Mussa will append .mtl if you do not provide a file extension +(valid file extensions: .mtl & .txt). .. image:: images/save_motifs.png :alt: Save Motifs -- 2.30.2