From 9ef59dda76a5451e687feb030bf2b40634ea6ba9 Mon Sep 17 00:00:00 2001 From: Brandon King Date: Wed, 13 Sep 2006 22:14:25 +0000 Subject: [PATCH] Mussa Manual: Todo comments --- doc/manual/mussagl_manual.rst | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) diff --git a/doc/manual/mussagl_manual.rst b/doc/manual/mussagl_manual.rst index 778e9ab..19b9690 100644 --- a/doc/manual/mussagl_manual.rst +++ b/doc/manual/mussagl_manual.rst @@ -10,6 +10,30 @@ Last updated: July 7th, 2006 Updated to Mussagl build: 287 +.. Things to add + * New features / change log + * Comment out anything isn't implemented yet. + * List of features that will be implemented in the future. + * Look into the homology mapping of UCSC. + * Add toggle to genomes. + * Document why one fast record per region. + * How to deal with the hazards of small utrs vis motif finder. (Add warning) + * Add warning about saving fasta file. + * Add a general principles section near the top + * Using comparison algorithm which will pickup all repeats + * Add info about repeatmasking + * Checking upstream and downstream genes for make sure you are in the right regions. + * Later on: look into Ensembl + * Look into method of homology instead of blating. + * Mention advantages of using mupa. + * Mention the difference between using arrows and scroll bar + * Document the color for motifs + * Update for Mac user left click + +* Wormbase/Flybase/mirBASE + + + .. contents:: Introduction -- 2.30.2