From f7ee30e281655c4ada1fa9033fb82a7a3610f775 Mon Sep 17 00:00:00 2001 From: Brandon King Date: Sat, 28 Oct 2006 00:44:58 +0000 Subject: [PATCH] Mussagl Manual: Docs 1.0 updates (part two) * Updated Mac OS X install instruction. (ticket #168) * Documented why sub-analysis exists (ticket: #214) * Spelling err fix. * Hid changelog / major updates sections for future use. (ticket: #162) --- doc/manual/mussagl_manual.rst | 33 ++++++++++++++++++--------------- 1 file changed, 18 insertions(+), 15 deletions(-) diff --git a/doc/manual/mussagl_manual.rst b/doc/manual/mussagl_manual.rst index ed4642d..df5426f 100644 --- a/doc/manual/mussagl_manual.rst +++ b/doc/manual/mussagl_manual.rst @@ -39,17 +39,16 @@ Documentation for Mussagl v1.0 Status ====== -Major New Features ------------------- - - * Build 381 - * Analysis "Save As" feature +.. -Change Log ----------- - -.. INSERT CHANGE LOG HERE -.. END INSERT CHANGE LOG + Major New Features + ------------------ + + Change Log + ---------- + + .. INSERT CHANGE LOG HERE + .. END INSERT CHANGE LOG Features to be Implemented -------------------------- @@ -80,7 +79,7 @@ Short History of Mussa Mussa Python/PMW Prototype ~~~~~~~~~~~~~~~~~~~~~~~~~~ -First Python/PMW based protoype. +First Python/PMW based prototype. Mussa C++/FLTK ~~~~~~~~~~~~~~ @@ -128,11 +127,11 @@ Install Mac OS X ~~~~~~~~ -Once you have downloaded the .dmg file, double click on it and follow -the install instructions. - -FIXME: Mention how to launch the program. + * Download .dmg file. + * Double click on .dmg file. + * Drag Mussa icon to your /Applications folder. + * Double Click on Mussa icon to open program. Windows XP ~~~~~~~~~~ @@ -704,6 +703,10 @@ You should see the alignment at the base-pair level as shown below. Sub-analysis ------------ +Sub-analysis was created to allow you to analyze a sub-region using +different parameters. This may allow you to find matches which may not +have shown up with your initial settings. + To run a sub-analysis **highlight** a section of sequence and *right click* on it and select **Add to subanalysis**. To the same for the sequences shown in orange in the screenshot below. Note that you **are -- 2.30.2