MANIFEST.in

   1 #
   2 # Use .add_data_files and .add_data_dir methods in a appropriate
   3 # setup.py files to include non-python files such as documentation,
   4 # data, etc files to distribution. Avoid using MANIFEST.in for that.
   5 #
   6 include MANIFEST.in
   7 include COPYING
   8 include INSTALL
   9 include KNOWN_BUGS
  10 include THANKS
  11 include distribute_setup.py
  12 include pysam/csamtools.pxd
  13 include pysam/csamtools.pyx
  14 include pysam/csamtools.c
  15 include pysam/ctabix.pxd
  16 include pysam/ctabix.c
  17 include pysam/ctabix.pyx
  18 include pysam/TabProxies.c
  19 include pysam/TabProxies.pyx
  20 include pysam/TabProxies.pxd
  21 include pysam/cvcf.pyx
  22 include pysam/cvcf.pxd
  23 include pysam/cvcf.c
  24 include pysam/pysam_util.h
  25 include samtools/*.h
  26 include samtools/*/*.h
  27 include tabix/*.h
  28
  29 # pysam tests
  30 include tests/00README.txt
  31 include tests/Makefile
  32 include tests/ex1.fa
  33 include tests/ex1.sam.gz
  34 include tests/ex3.sam
  35 include tests/ex4.sam
  36 include tests/ex5.sam
  37 include tests/ex6.sam
  38 include tests/ex7.sam
  39 include tests/ex8.sam
  40 include tests/ex9_fail.bam
  41 include tests/ex9_nofail.bam
  42 include tests/ex10.sam
  43 include tests/example.py
  44 include tests/pysam_test.py
  45 include tests/segfault_tests.py
  46 include tests/example_*.sam
  47 include tests/tag_bug.bam
  48 include tests/example.vcf40
  49 include tests/example_empty_header.bam
  50 include tests/issue100.bam
  51
  52 # tabix tests
  53 include tests/tabix_test.py
  54 include tests/example.gtf.gz
  55 include tests/example.gtf.gz.tbi
  56 include tests/example.bed.gz
  57 include tests/example.bed.gz.tbi
  58 include tests/vcf-examples/*.vcf
  59