X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=pysam.git;a=blobdiff_plain;f=pysam%2Fctabix.c;fp=pysam%2Fctabix.c;h=11a2c6f1310af4bc4bbd785d3fb8a17885e4c339;hp=0000000000000000000000000000000000000000;hb=bd0c3067c187d1f718004fb38acc093af8810a02;hpb=1b740fc70684c92a5e2293013217d5a2fd661d8a diff --git a/pysam/ctabix.c b/pysam/ctabix.c new file mode 100644 index 0000000..11a2c6f --- /dev/null +++ b/pysam/ctabix.c @@ -0,0 +1,9005 @@ +/* Generated by Cython 0.13 on Thu May 5 14:57:46 2011 */ + +#define PY_SSIZE_T_CLEAN +#include "Python.h" +#ifndef Py_PYTHON_H + #error Python headers needed to compile C extensions, please install development version of Python. +#else + +#include /* For offsetof */ +#ifndef offsetof +#define offsetof(type, member) ( (size_t) & ((type*)0) -> member ) +#endif + +#if !defined(WIN32) && !defined(MS_WINDOWS) + #ifndef __stdcall + #define __stdcall + #endif + #ifndef __cdecl + #define __cdecl + #endif + #ifndef __fastcall + #define __fastcall + #endif +#endif + +#ifndef DL_IMPORT + #define DL_IMPORT(t) t +#endif +#ifndef DL_EXPORT + #define DL_EXPORT(t) t +#endif + +#ifndef PY_LONG_LONG + #define PY_LONG_LONG LONG_LONG +#endif + +#if PY_VERSION_HEX < 0x02040000 + #define METH_COEXIST 0 + #define PyDict_CheckExact(op) (Py_TYPE(op) == &PyDict_Type) + #define PyDict_Contains(d,o) PySequence_Contains(d,o) +#endif + +#if PY_VERSION_HEX < 0x02050000 + typedef int Py_ssize_t; + #define PY_SSIZE_T_MAX INT_MAX + #define PY_SSIZE_T_MIN INT_MIN + #define PY_FORMAT_SIZE_T "" + #define PyInt_FromSsize_t(z) PyInt_FromLong(z) + #define PyInt_AsSsize_t(o) PyInt_AsLong(o) + #define PyNumber_Index(o) PyNumber_Int(o) + #define PyIndex_Check(o) PyNumber_Check(o) + #define PyErr_WarnEx(category, message, stacklevel) PyErr_Warn(category, message) +#endif + +#if PY_VERSION_HEX < 0x02060000 + #define Py_REFCNT(ob) (((PyObject*)(ob))->ob_refcnt) + #define Py_TYPE(ob) (((PyObject*)(ob))->ob_type) + #define Py_SIZE(ob) (((PyVarObject*)(ob))->ob_size) + #define PyVarObject_HEAD_INIT(type, size) \ + PyObject_HEAD_INIT(type) size, + #define PyType_Modified(t) + + typedef struct { + void *buf; + PyObject *obj; + Py_ssize_t len; + Py_ssize_t itemsize; + int readonly; + int ndim; + char *format; + Py_ssize_t *shape; + Py_ssize_t *strides; + Py_ssize_t *suboffsets; + void *internal; + } Py_buffer; + + #define PyBUF_SIMPLE 0 + #define PyBUF_WRITABLE 0x0001 + #define PyBUF_FORMAT 0x0004 + #define PyBUF_ND 0x0008 + #define PyBUF_STRIDES (0x0010 | PyBUF_ND) + #define PyBUF_C_CONTIGUOUS (0x0020 | PyBUF_STRIDES) + #define PyBUF_F_CONTIGUOUS (0x0040 | PyBUF_STRIDES) + #define PyBUF_ANY_CONTIGUOUS (0x0080 | PyBUF_STRIDES) + #define PyBUF_INDIRECT (0x0100 | PyBUF_STRIDES) + +#endif + +#if PY_MAJOR_VERSION < 3 + #define __Pyx_BUILTIN_MODULE_NAME "__builtin__" +#else + #define __Pyx_BUILTIN_MODULE_NAME "builtins" +#endif + +#if PY_MAJOR_VERSION >= 3 + #define Py_TPFLAGS_CHECKTYPES 0 + #define Py_TPFLAGS_HAVE_INDEX 0 +#endif + +#if (PY_VERSION_HEX < 0x02060000) || (PY_MAJOR_VERSION >= 3) + #define Py_TPFLAGS_HAVE_NEWBUFFER 0 +#endif + +#if PY_MAJOR_VERSION >= 3 + #define PyBaseString_Type PyUnicode_Type + #define PyStringObject PyUnicodeObject + #define PyString_Type PyUnicode_Type + #define PyString_Check PyUnicode_Check + #define PyString_CheckExact PyUnicode_CheckExact +#endif + +#if PY_VERSION_HEX < 0x02060000 + #define PyBytesObject PyStringObject + #define PyBytes_Type PyString_Type + #define PyBytes_Check PyString_Check + #define PyBytes_CheckExact PyString_CheckExact + #define PyBytes_FromString PyString_FromString + #define PyBytes_FromStringAndSize PyString_FromStringAndSize + #define PyBytes_FromFormat PyString_FromFormat + #define PyBytes_DecodeEscape PyString_DecodeEscape + #define PyBytes_AsString PyString_AsString + #define PyBytes_AsStringAndSize PyString_AsStringAndSize + #define PyBytes_Size PyString_Size + #define PyBytes_AS_STRING PyString_AS_STRING + #define PyBytes_GET_SIZE PyString_GET_SIZE + #define PyBytes_Repr PyString_Repr + #define PyBytes_Concat PyString_Concat + #define PyBytes_ConcatAndDel PyString_ConcatAndDel + #define PySet_Check(obj) PyObject_TypeCheck(obj, &PySet_Type) + #define PyFrozenSet_Check(obj) PyObject_TypeCheck(obj, &PyFrozenSet_Type) +#endif + +#ifndef PySet_CheckExact +# define PySet_CheckExact(obj) (Py_TYPE(obj) == &PySet_Type) +#endif + +#if PY_MAJOR_VERSION >= 3 + #define PyInt_Type PyLong_Type + #define PyInt_Check(op) PyLong_Check(op) + #define PyInt_CheckExact(op) PyLong_CheckExact(op) + #define PyInt_FromString PyLong_FromString + #define PyInt_FromUnicode PyLong_FromUnicode + #define PyInt_FromLong PyLong_FromLong + #define PyInt_FromSize_t PyLong_FromSize_t + #define PyInt_FromSsize_t PyLong_FromSsize_t + #define PyInt_AsLong PyLong_AsLong + #define PyInt_AS_LONG PyLong_AS_LONG + #define PyInt_AsSsize_t PyLong_AsSsize_t + #define PyInt_AsUnsignedLongMask PyLong_AsUnsignedLongMask + #define PyInt_AsUnsignedLongLongMask PyLong_AsUnsignedLongLongMask +#endif + +#if PY_MAJOR_VERSION >= 3 + #define PyBoolObject PyLongObject +#endif + + +#if PY_MAJOR_VERSION >= 3 + #define __Pyx_PyNumber_Divide(x,y) PyNumber_TrueDivide(x,y) + #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceTrueDivide(x,y) +#else + #define __Pyx_PyNumber_Divide(x,y) PyNumber_Divide(x,y) + #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceDivide(x,y) +#endif + +#if PY_MAJOR_VERSION >= 3 + #define PyMethod_New(func, self, klass) ((self) ? PyMethod_New(func, self) : PyInstanceMethod_New(func)) +#endif + +#if PY_VERSION_HEX < 0x02050000 + #define __Pyx_GetAttrString(o,n) PyObject_GetAttrString((o),((char *)(n))) + #define __Pyx_SetAttrString(o,n,a) PyObject_SetAttrString((o),((char *)(n)),(a)) + #define __Pyx_DelAttrString(o,n) PyObject_DelAttrString((o),((char *)(n))) +#else + #define __Pyx_GetAttrString(o,n) PyObject_GetAttrString((o),(n)) + #define __Pyx_SetAttrString(o,n,a) PyObject_SetAttrString((o),(n),(a)) + #define __Pyx_DelAttrString(o,n) PyObject_DelAttrString((o),(n)) +#endif + +#if PY_VERSION_HEX < 0x02050000 + #define __Pyx_NAMESTR(n) ((char *)(n)) + #define __Pyx_DOCSTR(n) ((char *)(n)) +#else + #define __Pyx_NAMESTR(n) (n) + #define __Pyx_DOCSTR(n) (n) +#endif + +#ifdef __cplusplus +#define __PYX_EXTERN_C extern "C" +#else +#define __PYX_EXTERN_C extern +#endif + +#if defined(WIN32) || defined(MS_WINDOWS) +#define _USE_MATH_DEFINES +#endif +#include +#define __PYX_HAVE_API__ctabix +#include "string.h" +#include "stdlib.h" +#include "stdio.h" +#include "ctype.h" +#include "sys/types.h" +#include "sys/stat.h" +#include "fcntl.h" +#include "unistd.h" +#include "stdint.h" +#include "bgzf.h" +#include "tabix.h" +#include "pythread.h" + +/* inline attribute */ +#ifndef CYTHON_INLINE + #if defined(__GNUC__) + #define CYTHON_INLINE __inline__ + #elif defined(_MSC_VER) + #define CYTHON_INLINE __inline + #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L + #define CYTHON_INLINE inline + #else + #define CYTHON_INLINE + #endif +#endif + +/* unused attribute */ +#ifndef CYTHON_UNUSED +# if defined(__GNUC__) +# if !(defined(__cplusplus)) || (__GNUC__ > 3 || (__GNUC__ == 3 && __GNUC_MINOR__ >= 4)) +# define CYTHON_UNUSED __attribute__ ((__unused__)) +# else +# define CYTHON_UNUSED +# endif +# elif defined(__ICC) || defined(__INTEL_COMPILER) +# define CYTHON_UNUSED __attribute__ ((__unused__)) +# else +# define CYTHON_UNUSED +# endif +#endif + +typedef struct {PyObject **p; char *s; const long n; const char* encoding; const char is_unicode; const char is_str; const char intern; } __Pyx_StringTabEntry; /*proto*/ + + +/* Type Conversion Predeclarations */ + +#define __Pyx_PyBytes_FromUString(s) PyBytes_FromString((char*)s) +#define __Pyx_PyBytes_AsUString(s) ((unsigned char*) PyBytes_AsString(s)) + +#define __Pyx_PyBool_FromLong(b) ((b) ? 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PyFloat_AS_DOUBLE(x) : PyFloat_AsDouble(x)) + + +#ifdef __GNUC__ +/* Test for GCC > 2.95 */ +#if __GNUC__ > 2 || (__GNUC__ == 2 && (__GNUC_MINOR__ > 95)) +#define likely(x) __builtin_expect(!!(x), 1) +#define unlikely(x) __builtin_expect(!!(x), 0) +#else /* __GNUC__ > 2 ... */ +#define likely(x) (x) +#define unlikely(x) (x) +#endif /* __GNUC__ > 2 ... */ +#else /* __GNUC__ */ +#define likely(x) (x) +#define unlikely(x) (x) +#endif /* __GNUC__ */ + +static PyObject *__pyx_m; +static PyObject *__pyx_b; +static PyObject *__pyx_empty_tuple; +static PyObject *__pyx_empty_bytes; +static int __pyx_lineno; +static int __pyx_clineno = 0; +static const char * __pyx_cfilenm= __FILE__; +static const char *__pyx_filename; + + +static const char *__pyx_f[] = { + "ctabix.pyx", + "bool.pxd", + "TabProxies.pxd", +}; + +/* Type declarations */ + +/* "pysam/ctabix.pxd":178 + * cdef tabix_t * tabixfile + * + * cdef class Parser: # <<<<<<<<<<<<<< + * pass + */ + +struct __pyx_obj_6ctabix_Parser { + PyObject_HEAD +}; + +/* "/ifs/devel/pysam/pysam/pysam/ctabix.pyx":293 + * return r + * + * cdef class asVCF( Parser ): # <<<<<<<<<<<<<< + * '''converts a :term:`tabix row` into a VCF record.''' + * def __call__(self, char * buffer, int len ): + */ + +struct __pyx_obj_6ctabix_asVCF { + struct __pyx_obj_6ctabix_Parser __pyx_base; +}; + +/* "pysam/TabProxies.pxd":42 + * ctypedef int uint64_t + * + * cdef class TupleProxy: # <<<<<<<<<<<<<< + * + * cdef: + */ + +struct __pyx_obj_10TabProxies_TupleProxy { + PyObject_HEAD + struct __pyx_vtabstruct_10TabProxies_TupleProxy *__pyx_vtab; + char *data; + char **fields; + int nfields; + int index; + int nbytes; + int offset; + int is_modified; +}; + +/* "pysam/TabProxies.pxd":77 + * cdef update( self, char * buffer, size_t nbytes ) + * + * cdef class NamedTupleProxy( TupleProxy) : # <<<<<<<<<<<<<< + * pass + * + */ + +struct __pyx_obj_10TabProxies_NamedTupleProxy { + struct __pyx_obj_10TabProxies_TupleProxy __pyx_base; +}; + +/* "pysam/TabProxies.pxd":80 + * pass + * + * cdef class BedProxy( NamedTupleProxy) : # <<<<<<<<<<<<<< + * + * cdef: + */ + +struct __pyx_obj_10TabProxies_BedProxy { + struct __pyx_obj_10TabProxies_NamedTupleProxy __pyx_base; + char *contig; + uint32_t start; + uint32_t end; + int bedfields; +}; + +/* "pysam/TabProxies.pxd":91 + * cdef update( self, char * buffer, size_t nbytes ) + * + * cdef class VCFProxy( NamedTupleProxy) : # <<<<<<<<<<<<<< + * + * cdef: + */ + +struct __pyx_obj_10TabProxies_VCFProxy { + struct __pyx_obj_10TabProxies_NamedTupleProxy __pyx_base; + char *contig; + uint32_t pos; +}; + +/* "pysam/TabProxies.pxd":60 + * cdef update( self, char * buffer, size_t nbytes ) + * + * cdef class GTFProxy( TupleProxy) : # <<<<<<<<<<<<<< + * + * cdef: + */ + +struct __pyx_obj_10TabProxies_GTFProxy { + struct __pyx_obj_10TabProxies_TupleProxy __pyx_base; + char *contig; + char *source; + char *feature; + uint32_t start; + uint32_t end; + char *score; + char *strand; + char *frame; + char *attributes; + int hasOwnAttributes; +}; + +/* "/ifs/devel/pysam/pysam/pysam/ctabix.pyx":161 + * return result + * + * cdef class TabixIterator: # <<<<<<<<<<<<<< + * """iterates over rows in *tabixfile* in region + * given by *tid*, *start* and *end*. + */ + +struct __pyx_obj_6ctabix_TabixIterator { + PyObject_HEAD + ti_iter_t iterator; + tabix_t *tabixfile; +}; + +/* "/ifs/devel/pysam/pysam/pysam/ctabix.pyx":304 + * ######################################################### + * ######################################################### + * cdef class TabixIteratorParsed: # <<<<<<<<<<<<<< + * """iterates over mapped reads in a region. + * + */ + +struct __pyx_obj_6ctabix_TabixIteratorParsed { + PyObject_HEAD + ti_iter_t iterator; + tabix_t *tabixfile; + struct __pyx_obj_6ctabix_Parser *parser; +}; + +/* "/ifs/devel/pysam/pysam/pysam/ctabix.pyx":216 + * ti_iter_destroy(self.iterator) + * + * cdef class TabixHeaderIterator: # <<<<<<<<<<<<<< + * """return header lines. + * """ + */ + +struct __pyx_obj_6ctabix_TabixHeaderIterator { + PyObject_HEAD + ti_iter_t iterator; + tabix_t *tabixfile; +}; + +/* "pysam/ctabix.pxd":172 + * # char *ti_iter_read(BGZF *fp, ti_iter_t iter, int *len) + * + * cdef class Tabixfile: # <<<<<<<<<<<<<< + * cdef char * filename + * + */ + +struct __pyx_obj_6ctabix_Tabixfile { + PyObject_HEAD + char *filename; + tabix_t *tabixfile; +}; + +/* "/ifs/devel/pysam/pysam/pysam/ctabix.pyx":277 + * return r + * + * cdef class asGTF(Parser): # <<<<<<<<<<<<<< + * '''converts a :term:`tabix row` into a GTF record.''' + * def __call__(self, char * buffer, int len): + */ + +struct __pyx_obj_6ctabix_asGTF { + struct __pyx_obj_6ctabix_Parser __pyx_base; +}; + +/* "/ifs/devel/pysam/pysam/pysam/ctabix.pyx":285 + * return r + * + * cdef class asBed( Parser ): # <<<<<<<<<<<<<< + * '''converts a :term:`tabix row` into a GTF record.''' + * def __call__(self, char * buffer, int len): + */ + +struct __pyx_obj_6ctabix_asBed { + struct __pyx_obj_6ctabix_Parser __pyx_base; +}; + +/* "/ifs/devel/pysam/pysam/pysam/ctabix.pyx":267 + * pass + * + * cdef class asTuple(Parser): # <<<<<<<<<<<<<< + * '''converts a :term:`tabix row` into a python tuple.''' + * def __call__(self, char * buffer, int len): + */ + +struct __pyx_obj_6ctabix_asTuple { + struct __pyx_obj_6ctabix_Parser __pyx_base; +}; + + +/* "pysam/TabProxies.pxd":42 + * ctypedef int uint64_t + * + * cdef class TupleProxy: # <<<<<<<<<<<<<< + * + * cdef: + */ + +struct __pyx_vtabstruct_10TabProxies_TupleProxy { + int (*getMaxFields)(struct __pyx_obj_10TabProxies_TupleProxy *, size_t); + PyObject *(*take)(struct __pyx_obj_10TabProxies_TupleProxy *, char *, size_t); + PyObject *(*present)(struct __pyx_obj_10TabProxies_TupleProxy *, char *, size_t); + PyObject *(*copy)(struct __pyx_obj_10TabProxies_TupleProxy *, char *, size_t); + PyObject *(*update)(struct __pyx_obj_10TabProxies_TupleProxy *, char *, size_t); +}; +static struct __pyx_vtabstruct_10TabProxies_TupleProxy *__pyx_vtabptr_10TabProxies_TupleProxy; + + +/* "pysam/TabProxies.pxd":77 + * cdef update( self, char * buffer, size_t nbytes ) + * + * cdef class NamedTupleProxy( TupleProxy) : # <<<<<<<<<<<<<< + * pass + * + */ + +struct __pyx_vtabstruct_10TabProxies_NamedTupleProxy { + struct __pyx_vtabstruct_10TabProxies_TupleProxy __pyx_base; +}; +static struct __pyx_vtabstruct_10TabProxies_NamedTupleProxy *__pyx_vtabptr_10TabProxies_NamedTupleProxy; + + +/* "pysam/TabProxies.pxd":91 + * cdef update( self, char * buffer, size_t nbytes ) + * + * cdef class VCFProxy( NamedTupleProxy) : # <<<<<<<<<<<<<< + * + * cdef: + */ + +struct __pyx_vtabstruct_10TabProxies_VCFProxy { + struct __pyx_vtabstruct_10TabProxies_NamedTupleProxy __pyx_base; 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/*proto*/ + +static CYTHON_INLINE int __Pyx_CheckKeywordStrings(PyObject *kwdict, + const char* function_name, int kw_allowed); /*proto*/ + +static void __Pyx_RaiseDoubleKeywordsError( + const char* func_name, PyObject* kw_name); /*proto*/ + +static void __Pyx_RaiseArgtupleInvalid(const char* func_name, int exact, + Py_ssize_t num_min, Py_ssize_t num_max, Py_ssize_t num_found); /*proto*/ + +static int __Pyx_ParseOptionalKeywords(PyObject *kwds, PyObject **argnames[], PyObject *kwds2, PyObject *values[], Py_ssize_t num_pos_args, const char* function_name); /*proto*/ + + +static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j) { + PyObject *r; + if (!j) return NULL; + r = PyObject_GetItem(o, j); + Py_DECREF(j); + return r; +} + + +#define __Pyx_GetItemInt_List(o, i, size, to_py_func) (((size) <= sizeof(Py_ssize_t)) ? \ + __Pyx_GetItemInt_List_Fast(o, i) : \ + __Pyx_GetItemInt_Generic(o, to_py_func(i))) + +static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i) { + if (likely(o != Py_None)) { + if (likely((0 <= i) & (i < PyList_GET_SIZE(o)))) { + PyObject *r = PyList_GET_ITEM(o, i); + Py_INCREF(r); + return r; + } + else if ((-PyList_GET_SIZE(o) <= i) & (i < 0)) { + PyObject *r = PyList_GET_ITEM(o, PyList_GET_SIZE(o) + i); + Py_INCREF(r); + return r; + } + } + return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i)); +} + +#define __Pyx_GetItemInt_Tuple(o, i, size, to_py_func) (((size) <= sizeof(Py_ssize_t)) ? \ + __Pyx_GetItemInt_Tuple_Fast(o, i) : \ + __Pyx_GetItemInt_Generic(o, to_py_func(i))) + +static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i) { + if (likely(o != Py_None)) { + if (likely((0 <= i) & (i < PyTuple_GET_SIZE(o)))) { + PyObject *r = PyTuple_GET_ITEM(o, i); + Py_INCREF(r); + return r; + } + else if ((-PyTuple_GET_SIZE(o) <= i) & (i < 0)) { + PyObject *r = PyTuple_GET_ITEM(o, PyTuple_GET_SIZE(o) + i); + Py_INCREF(r); + return r; + } + } + return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i)); +} + + +#define __Pyx_GetItemInt(o, i, size, to_py_func) (((size) <= sizeof(Py_ssize_t)) ? \ + __Pyx_GetItemInt_Fast(o, i) : \ + __Pyx_GetItemInt_Generic(o, to_py_func(i))) + +static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i) { + PyObject *r; + if (PyList_CheckExact(o) && ((0 <= i) & (i < PyList_GET_SIZE(o)))) { + r = PyList_GET_ITEM(o, i); + Py_INCREF(r); + } + else if (PyTuple_CheckExact(o) && ((0 <= i) & (i < PyTuple_GET_SIZE(o)))) { + r = PyTuple_GET_ITEM(o, i); + Py_INCREF(r); + } + else if (Py_TYPE(o)->tp_as_sequence && Py_TYPE(o)->tp_as_sequence->sq_item && (likely(i >= 0))) { + r = PySequence_GetItem(o, i); + } + else { + r = __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i)); + } + return r; +} + +static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index); + +static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected); + +static PyObject *__Pyx_UnpackItem(PyObject *, Py_ssize_t index); /*proto*/ +static int __Pyx_EndUnpack(PyObject *, Py_ssize_t expected); /*proto*/ + +static int __Pyx_ArgTypeTest(PyObject *obj, PyTypeObject *type, int none_allowed, + const char *name, int exact); /*proto*/ + +static CYTHON_INLINE void __Pyx_RaiseNoneIndexingError(void); + + +#if PY_MAJOR_VERSION >= 3 +static PyObject *__Pyx_PyDict_GetItem(PyObject *d, PyObject* key) { + PyObject *value; + if (unlikely(d == Py_None)) { + __Pyx_RaiseNoneIndexingError(); + return NULL; + } + value = PyDict_GetItemWithError(d, key); + if (unlikely(!value)) { + if (!PyErr_Occurred()) + PyErr_SetObject(PyExc_KeyError, key); + return NULL; + } + Py_INCREF(value); + return value; +} +#else + #define __Pyx_PyDict_GetItem(d, key) PyObject_GetItem(d, key) +#endif + +static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb); /*proto*/ + +static CYTHON_INLINE void __Pyx_ExceptionSave(PyObject **type, PyObject **value, PyObject **tb); /*proto*/ +static void __Pyx_ExceptionReset(PyObject *type, PyObject *value, PyObject *tb); /*proto*/ + +static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list); /*proto*/ + +static CYTHON_INLINE void __Pyx_ErrRestore(PyObject *type, PyObject *value, PyObject *tb); /*proto*/ +static CYTHON_INLINE void __Pyx_ErrFetch(PyObject **type, PyObject **value, PyObject **tb); /*proto*/ + +static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb); /*proto*/ + +static CYTHON_INLINE int32_t __Pyx_PyInt_from_py_int32_t(PyObject *); + +static CYTHON_INLINE unsigned char __Pyx_PyInt_AsUnsignedChar(PyObject *); + +static CYTHON_INLINE unsigned short __Pyx_PyInt_AsUnsignedShort(PyObject *); + +static CYTHON_INLINE unsigned int __Pyx_PyInt_AsUnsignedInt(PyObject *); + +static CYTHON_INLINE char __Pyx_PyInt_AsChar(PyObject *); + +static CYTHON_INLINE short __Pyx_PyInt_AsShort(PyObject *); + +static CYTHON_INLINE int __Pyx_PyInt_AsInt(PyObject *); + +static CYTHON_INLINE signed char __Pyx_PyInt_AsSignedChar(PyObject *); + +static CYTHON_INLINE signed short __Pyx_PyInt_AsSignedShort(PyObject *); + +static CYTHON_INLINE signed int __Pyx_PyInt_AsSignedInt(PyObject *); + +static CYTHON_INLINE int __Pyx_PyInt_AsLongDouble(PyObject *); + +static CYTHON_INLINE unsigned long __Pyx_PyInt_AsUnsignedLong(PyObject *); + +static CYTHON_INLINE unsigned PY_LONG_LONG __Pyx_PyInt_AsUnsignedLongLong(PyObject *); + +static CYTHON_INLINE long __Pyx_PyInt_AsLong(PyObject *); + +static CYTHON_INLINE PY_LONG_LONG __Pyx_PyInt_AsLongLong(PyObject *); + +static CYTHON_INLINE signed long __Pyx_PyInt_AsSignedLong(PyObject *); + +static CYTHON_INLINE signed PY_LONG_LONG __Pyx_PyInt_AsSignedLongLong(PyObject *); + +static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name, long size, int strict); /*proto*/ + +static PyObject *__Pyx_ImportModule(const char *name); /*proto*/ + +static int __Pyx_GetVtable(PyObject *dict, void *vtabptr); /*proto*/ + +static void __Pyx_AddTraceback(const char *funcname); /*proto*/ + +static int __Pyx_InitStrings(__Pyx_StringTabEntry *t); /*proto*/ +/* Module declarations from cpython.version */ + +/* Module declarations from cpython.ref */ + +/* Module declarations from cpython.exc */ + +/* Module declarations from cpython.module */ + +/* Module declarations from cpython.mem */ + +/* Module declarations from cpython.tuple */ + +/* Module declarations from cpython.list */ + +/* Module declarations from libc.stdio */ + +/* Module declarations from cpython.object */ + +/* Module declarations from cpython.sequence */ + +/* Module declarations from cpython.mapping */ + +/* Module declarations from cpython.iterator */ + +/* Module declarations from cpython.type */ + +/* Module declarations from cpython.number */ + +/* Module declarations from cpython.int */ + +/* Module declarations from __builtin__ */ + +/* Module declarations from cpython.bool */ + +static PyTypeObject *__pyx_ptype_7cpython_4bool_bool = 0; +/* Module declarations from cpython.long */ + +/* Module declarations from cpython.float */ + +/* Module declarations from cpython.complex */ + +/* Module declarations from cpython.string */ + +/* Module declarations from cpython.unicode */ + +/* Module declarations from cpython.dict */ + +/* Module declarations from cpython.instance */ + +/* Module declarations from cpython.function */ + +/* Module declarations from cpython.method */ + +/* Module declarations from cpython.weakref */ + +/* Module declarations from cpython.getargs */ + +/* Module declarations from cpython.pythread */ + +/* Module declarations from cpython.cobject */ + +/* Module declarations from cpython.oldbuffer */ + +/* Module declarations from cpython.set */ + +/* Module declarations from cpython.buffer */ + +/* Module declarations from cpython.bytes */ + +/* Module declarations from cpython.pycapsule */ + +/* Module declarations from cpython */ + +/* Module declarations from TabProxies */ + +static PyTypeObject *__pyx_ptype_10TabProxies_TupleProxy = 0; +static PyTypeObject *__pyx_ptype_10TabProxies_GTFProxy = 0; +static PyTypeObject *__pyx_ptype_10TabProxies_NamedTupleProxy = 0; +static PyTypeObject *__pyx_ptype_10TabProxies_BedProxy = 0; +static PyTypeObject *__pyx_ptype_10TabProxies_VCFProxy = 0; +/* Module declarations from ctabix */ + +static PyTypeObject *__pyx_ptype_6ctabix_Tabixfile = 0; +static PyTypeObject *__pyx_ptype_6ctabix_Parser = 0; +static PyTypeObject *__pyx_ptype_6ctabix_TabixIterator = 0; +static PyTypeObject *__pyx_ptype_6ctabix_TabixHeaderIterator = 0; +static PyTypeObject *__pyx_ptype_6ctabix_asTuple = 0; +static PyTypeObject *__pyx_ptype_6ctabix_asGTF = 0; +static PyTypeObject *__pyx_ptype_6ctabix_asBed = 0; +static PyTypeObject *__pyx_ptype_6ctabix_asVCF = 0; +static PyTypeObject *__pyx_ptype_6ctabix_TabixIteratorParsed = 0; +#define __Pyx_MODULE_NAME "ctabix" +int __pyx_module_is_main_ctabix = 0; + +/* Implementation of ctabix */ +static PyObject *__pyx_builtin_IOError; +static PyObject *__pyx_builtin_ValueError; +static PyObject *__pyx_builtin_StopIteration; +static PyObject *__pyx_builtin_OSError; +static PyObject *__pyx_builtin_ord; +static PyObject *__pyx_builtin_KeyError; +static char __pyx_k_1[] = "invalid file opening mode `%s`"; +static char __pyx_k_2[] = ".tbi"; +static char __pyx_k_3[] = "file `%s` not found"; +static char __pyx_k_4[] = "index `%s` not found"; +static char __pyx_k_5[] = "could not open file `%s`"; +static char __pyx_k_6[] = "%s:%i-%i"; +static char __pyx_k_7[] = "invalid region `%s`"; +static char __pyx_k_8[] = "invalid region: start (%i) > end (%i)"; +static char __pyx_k_9[] = "start out of range (%i)"; +static char __pyx_k_10[] = "end out of range (%i)"; +static char __pyx_k_11[] = "I/O operation on closed file"; +static char __pyx_k_12[] = "malformatted query or wrong sequence name.\n"; +static char __pyx_k_13[] = "can't open header.\n"; +static char __pyx_k_15[] = "Filename '%s' already exists, use *force* to overwrite"; +static char __pyx_k_16[] = "could not open '%s' for writing"; +static char __pyx_k_17[] = "could not open '%s' for reading"; +static char __pyx_k_18[] = "writing failed"; +static char __pyx_k_20[] = "#"; +static char __pyx_k_22[] = "No such file '%s'"; +static char __pyx_k_23[] = ".gz"; +static char __pyx_k_24[] = "Filename '%s.tbi' already exists, use *force* to overwrite"; +static char __pyx_k_25[] = "unknown preset '%s', valid presets are '%s'"; +static char __pyx_k_26[] = ","; +static char __pyx_k_27[] = "chromosome names"; +static char __pyx_k_28[] = "Tabixfile._isOpen (line 19)"; +static char __pyx_k_29[] = "Tabixfile._open (line 23)"; +static char __pyx_k_30[] = "Tabixfile._parseRegion (line 57)"; +static char __pyx_k_31[] = "Tabixfile.fetch (line 102)"; +static char __pyx_k_32[] = "Tabixfile.header.__get__ (line 140)"; +static char __pyx_k_33[] = "TabixIterator.__next__ (line 192)"; +static char __pyx_k_34[] = "TabixHeaderIterator.__next__ (line 239)"; +static char __pyx_k_35[] = "TabixIteratorParsed.__next__ (line 342)"; +static char __pyx_k_36[] = "tabix_compress (line 362)"; +static char __pyx_k_37[] = "tabix_index (line 407)"; +static char __pyx_k__r[] = "r"; +static char __pyx_k__w[] = "w"; +static char __pyx_k__bc[] = "bc"; +static char __pyx_k__ec[] = "ec"; +static char __pyx_k__fp[] = "fp"; +static char __pyx_k__os[] = "os"; +static char __pyx_k__sc[] = "sc"; +static char __pyx_k__bed[] = "bed"; +static char __pyx_k__end[] = "end"; +static char __pyx_k__gff[] = "gff"; +static char __pyx_k__idx[] = "idx"; +static char __pyx_k__len[] = "len"; +static char __pyx_k__ord[] = "ord"; +static char __pyx_k__sam[] = "sam"; +static char __pyx_k__sys[] = "sys"; +static char __pyx_k__tid[] = "tid"; +static char __pyx_k__vcf[] = "vcf"; +static char __pyx_k__copy[] = "copy"; +static char __pyx_k__gzip[] = "gzip"; +static char __pyx_k__join[] = "join"; +static char __pyx_k__keys[] = "keys"; +static char __pyx_k__mode[] = "mode"; +static char __pyx_k__path[] = "path"; +static char __pyx_k___open[] = "_open"; +static char __pyx_k__asBed[] = "asBed"; +static char __pyx_k__asGTF[] = "asGTF"; +static char __pyx_k__asVCF[] = "asVCF"; +static char __pyx_k__close[] = "close"; +static char __pyx_k__fetch[] = "fetch"; +static char __pyx_k__force[] = "force"; +static char __pyx_k__start[] = "start"; +static char __pyx_k__types[] = "types"; +static char __pyx_k__buffer[] = "buffer"; +static char __pyx_k__ctypes[] = "ctypes"; +static char __pyx_k__exists[] = "exists"; +static char __pyx_k__header[] = "header"; +static char __pyx_k__parser[] = "parser"; +static char __pyx_k__pileup[] = "pileup"; +static char __pyx_k__preset[] = "preset"; +static char __pyx_k__psltbl[] = "psltbl"; +static char __pyx_k__region[] = "region"; +static char __pyx_k__struct[] = "struct"; +static char __pyx_k__unlink[] = "unlink"; +static char __pyx_k__IOError[] = "IOError"; +static char __pyx_k__OSError[] = "OSError"; +static char __pyx_k____all__[] = "__all__"; +static char __pyx_k____get__[] = "__get__"; +static char __pyx_k___isOpen[] = "_isOpen"; +static char __pyx_k__asTuple[] = "asTuple"; +static char __pyx_k__end_col[] = "end_col"; +static char __pyx_k__seq_col[] = "seq_col"; +static char __pyx_k__KeyError[] = "KeyError"; +static char __pyx_k__O_RDONLY[] = "O_RDONLY"; +static char __pyx_k____main__[] = "__main__"; +static char __pyx_k____next__[] = "__next__"; +static char __pyx_k____test__[] = "__test__"; +static char __pyx_k__endswith[] = "endswith"; +static char __pyx_k__filename[] = "filename"; +static char __pyx_k__iterator[] = "iterator"; +static char __pyx_k__tempfile[] = "tempfile"; +static char __pyx_k__Tabixfile[] = "Tabixfile"; +static char __pyx_k__itertools[] = "itertools"; +static char __pyx_k__line_skip[] = "line_skip"; +static char __pyx_k__meta_char[] = "meta_char"; +static char __pyx_k__reference[] = "reference"; +static char __pyx_k__start_col[] = "start_col"; +static char __pyx_k__tabixfile[] = "tabixfile"; +static char __pyx_k__zerobased[] = "zerobased"; +static char __pyx_k__ValueError[] = "ValueError"; +static char __pyx_k__filename_in[] = "filename_in"; +static char __pyx_k__tabix_index[] = "tabix_index"; +static char __pyx_k___parseRegion[] = "_parseRegion"; +static char __pyx_k__filename_out[] = "filename_out"; +static char __pyx_k__StopIteration[] = "StopIteration"; +static char __pyx_k__TabixIterator[] = "TabixIterator"; +static char __pyx_k__tabix_compress[] = "tabix_compress"; +static char __pyx_k__TabixHeaderIterator[] = "TabixHeaderIterator"; +static char __pyx_k__TabixIteratorParsed[] = "TabixIteratorParsed"; +static PyObject *__pyx_kp_s_1; +static PyObject *__pyx_kp_s_10; +static PyObject *__pyx_kp_s_11; +static PyObject *__pyx_kp_s_12; +static PyObject *__pyx_kp_s_13; +static PyObject *__pyx_kp_s_15; +static PyObject *__pyx_kp_s_16; +static PyObject *__pyx_kp_s_17; +static PyObject *__pyx_kp_s_18; +static PyObject *__pyx_kp_s_2; +static PyObject *__pyx_kp_s_20; +static PyObject *__pyx_kp_s_22; +static PyObject *__pyx_kp_s_23; +static PyObject *__pyx_kp_s_24; +static PyObject *__pyx_kp_s_25; +static PyObject *__pyx_kp_s_26; +static PyObject *__pyx_kp_u_28; +static PyObject *__pyx_kp_u_29; +static PyObject *__pyx_kp_s_3; +static PyObject *__pyx_kp_u_30; +static PyObject *__pyx_kp_u_31; +static PyObject *__pyx_kp_u_32; +static PyObject *__pyx_kp_u_33; +static PyObject *__pyx_kp_u_34; +static PyObject *__pyx_kp_u_35; +static PyObject *__pyx_kp_u_36; +static PyObject *__pyx_kp_u_37; +static PyObject *__pyx_kp_s_4; +static PyObject *__pyx_kp_s_5; +static PyObject *__pyx_kp_s_6; +static PyObject *__pyx_kp_s_7; +static PyObject *__pyx_kp_s_8; +static PyObject *__pyx_kp_s_9; +static PyObject *__pyx_n_s__IOError; +static PyObject *__pyx_n_s__KeyError; +static PyObject *__pyx_n_s__OSError; +static PyObject *__pyx_n_s__O_RDONLY; +static PyObject *__pyx_n_s__StopIteration; +static PyObject *__pyx_n_s__TabixHeaderIterator; +static PyObject *__pyx_n_s__TabixIterator; +static PyObject *__pyx_n_s__TabixIteratorParsed; +static PyObject *__pyx_n_s__Tabixfile; +static PyObject *__pyx_n_s__ValueError; +static PyObject *__pyx_n_s____all__; +static PyObject *__pyx_n_s____get__; +static PyObject *__pyx_n_s____main__; +static PyObject *__pyx_n_s____next__; +static PyObject *__pyx_n_s____test__; +static PyObject *__pyx_n_s___isOpen; +static PyObject *__pyx_n_s___open; +static PyObject *__pyx_n_s___parseRegion; +static PyObject *__pyx_n_s__asBed; +static PyObject *__pyx_n_s__asGTF; +static PyObject *__pyx_n_s__asTuple; +static PyObject *__pyx_n_s__asVCF; +static PyObject *__pyx_n_s__bc; +static PyObject *__pyx_n_s__bed; +static PyObject *__pyx_n_s__buffer; +static PyObject *__pyx_n_s__close; +static PyObject *__pyx_n_s__copy; +static PyObject *__pyx_n_s__ctypes; +static PyObject *__pyx_n_s__ec; +static PyObject *__pyx_n_s__end; +static PyObject *__pyx_n_s__end_col; +static PyObject *__pyx_n_s__endswith; +static PyObject *__pyx_n_s__exists; +static PyObject *__pyx_n_s__fetch; +static PyObject *__pyx_n_s__filename; +static PyObject *__pyx_n_s__filename_in; +static PyObject *__pyx_n_s__filename_out; +static PyObject *__pyx_n_s__force; +static PyObject *__pyx_n_s__fp; +static PyObject *__pyx_n_s__gff; +static PyObject *__pyx_n_s__gzip; +static PyObject *__pyx_n_s__header; +static PyObject *__pyx_n_s__idx; +static PyObject *__pyx_n_s__iterator; +static PyObject *__pyx_n_s__itertools; +static PyObject *__pyx_n_s__join; +static PyObject *__pyx_n_s__keys; +static PyObject *__pyx_n_s__len; +static PyObject *__pyx_n_s__line_skip; +static PyObject *__pyx_n_s__meta_char; +static PyObject *__pyx_n_s__mode; +static PyObject *__pyx_n_s__ord; +static PyObject *__pyx_n_s__os; +static PyObject *__pyx_n_s__parser; +static PyObject *__pyx_n_s__path; +static PyObject *__pyx_n_s__pileup; +static PyObject *__pyx_n_s__preset; +static PyObject *__pyx_n_s__psltbl; +static PyObject *__pyx_n_s__r; +static PyObject *__pyx_n_s__reference; +static PyObject *__pyx_n_s__region; +static PyObject *__pyx_n_s__sam; +static PyObject *__pyx_n_s__sc; +static PyObject *__pyx_n_s__seq_col; +static PyObject *__pyx_n_s__start; +static PyObject *__pyx_n_s__start_col; +static PyObject *__pyx_n_s__struct; +static PyObject *__pyx_n_s__sys; +static PyObject *__pyx_n_s__tabix_compress; +static PyObject *__pyx_n_s__tabix_index; +static PyObject *__pyx_n_s__tabixfile; +static PyObject *__pyx_n_s__tempfile; +static PyObject *__pyx_n_s__tid; +static PyObject *__pyx_n_s__types; +static PyObject *__pyx_n_s__unlink; +static PyObject *__pyx_n_s__vcf; +static PyObject *__pyx_n_s__w; +static PyObject *__pyx_n_s__zerobased; +static PyObject *__pyx_int_0; +static PyObject *__pyx_int_1; +static PyObject *__pyx_int_2; +static PyObject *__pyx_int_3; +static PyObject *__pyx_int_4; +static PyObject *__pyx_int_5; +static PyObject *__pyx_int_neg_1; +static PyObject *__pyx_int_15; +static PyObject *__pyx_int_17; +static PyObject *__pyx_int_18; +static PyObject *__pyx_int_0x10000; +static PyObject *__pyx_k_14; +static PyObject *__pyx_k_19; +static PyObject *__pyx_k_21; + +/* "/ifs/devel/pysam/pysam/pysam/ctabix.pyx":15 + * ''' + * + * def __cinit__(self, *args, **kwargs ): # <<<<<<<<<<<<<< + * self.tabixfile = NULL + * self._open( *args, **kwargs ) + */ + +static int __pyx_pf_6ctabix_9Tabixfile___cinit__(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds); 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+} + +static PyObject *__pyx_getprop_6ctabix_9Tabixfile_header(PyObject *o, void *x) { + return __pyx_pf_6ctabix_9Tabixfile_6header___get__(o); +} + +static PyObject *__pyx_getprop_6ctabix_9Tabixfile_contigs(PyObject *o, void *x) { + return __pyx_pf_6ctabix_9Tabixfile_7contigs___get__(o); +} + +static PyMethodDef __pyx_methods_6ctabix_Tabixfile[] = { + {__Pyx_NAMESTR("_isOpen"), (PyCFunction)__pyx_pf_6ctabix_9Tabixfile__isOpen, METH_NOARGS, __Pyx_DOCSTR(__pyx_doc_6ctabix_9Tabixfile__isOpen)}, + {__Pyx_NAMESTR("_open"), (PyCFunction)__pyx_pf_6ctabix_9Tabixfile__open, METH_VARARGS|METH_KEYWORDS, __Pyx_DOCSTR(__pyx_doc_6ctabix_9Tabixfile__open)}, + {__Pyx_NAMESTR("_parseRegion"), (PyCFunction)__pyx_pf_6ctabix_9Tabixfile__parseRegion, METH_VARARGS|METH_KEYWORDS, __Pyx_DOCSTR(__pyx_doc_6ctabix_9Tabixfile__parseRegion)}, + {__Pyx_NAMESTR("fetch"), (PyCFunction)__pyx_pf_6ctabix_9Tabixfile_fetch, METH_VARARGS|METH_KEYWORDS, __Pyx_DOCSTR(__pyx_doc_6ctabix_9Tabixfile_fetch)}, + {0, 0, 0, 0} +}; 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PyMethodDef __pyx_methods_6ctabix_Parser[] = { + {0, 0, 0, 0} +}; + +static PyNumberMethods __pyx_tp_as_number_Parser = { + 0, /*nb_add*/ + 0, /*nb_subtract*/ + 0, /*nb_multiply*/ + #if PY_MAJOR_VERSION < 3 + 0, /*nb_divide*/ + #endif + 0, /*nb_remainder*/ + 0, /*nb_divmod*/ + 0, /*nb_power*/ + 0, /*nb_negative*/ + 0, /*nb_positive*/ + 0, /*nb_absolute*/ + 0, /*nb_nonzero*/ + 0, /*nb_invert*/ + 0, /*nb_lshift*/ + 0, /*nb_rshift*/ + 0, /*nb_and*/ + 0, /*nb_xor*/ + 0, /*nb_or*/ + #if PY_MAJOR_VERSION < 3 + 0, /*nb_coerce*/ + #endif + 0, /*nb_int*/ + #if PY_MAJOR_VERSION < 3 + 0, /*nb_long*/ + #else + 0, /*reserved*/ + #endif + 0, /*nb_float*/ + #if PY_MAJOR_VERSION < 3 + 0, /*nb_oct*/ + #endif + #if PY_MAJOR_VERSION < 3 + 0, /*nb_hex*/ + #endif + 0, /*nb_inplace_add*/ + 0, /*nb_inplace_subtract*/ + 0, /*nb_inplace_multiply*/ + #if PY_MAJOR_VERSION < 3 + 0, /*nb_inplace_divide*/ + #endif + 0, /*nb_inplace_remainder*/ + 0, /*nb_inplace_power*/ + 0, /*nb_inplace_lshift*/ + 0, 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0x02060000 + 0, /*bf_getbuffer*/ + #endif + #if PY_VERSION_HEX >= 0x02060000 + 0, /*bf_releasebuffer*/ + #endif +}; + +PyTypeObject __pyx_type_6ctabix_Parser = { + PyVarObject_HEAD_INIT(0, 0) + __Pyx_NAMESTR("ctabix.Parser"), /*tp_name*/ + sizeof(struct __pyx_obj_6ctabix_Parser), /*tp_basicsize*/ + 0, /*tp_itemsize*/ + __pyx_tp_dealloc_6ctabix_Parser, /*tp_dealloc*/ + 0, /*tp_print*/ + 0, /*tp_getattr*/ + 0, /*tp_setattr*/ + #if PY_MAJOR_VERSION < 3 + 0, /*tp_compare*/ + #else + 0, /*reserved*/ + #endif + 0, /*tp_repr*/ + &__pyx_tp_as_number_Parser, /*tp_as_number*/ + &__pyx_tp_as_sequence_Parser, /*tp_as_sequence*/ + &__pyx_tp_as_mapping_Parser, /*tp_as_mapping*/ + 0, /*tp_hash*/ + 0, /*tp_call*/ + 0, /*tp_str*/ + 0, /*tp_getattro*/ + 0, /*tp_setattro*/ + &__pyx_tp_as_buffer_Parser, /*tp_as_buffer*/ + Py_TPFLAGS_DEFAULT|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_NEWBUFFER, /*tp_flags*/ + 0, /*tp_doc*/ + 0, /*tp_traverse*/ + 0, /*tp_clear*/ + 0, /*tp_richcompare*/ + 0, /*tp_weaklistoffset*/ + 0, /*tp_iter*/ + 0, /*tp_iternext*/ + __pyx_methods_6ctabix_Parser, /*tp_methods*/ + 0, /*tp_members*/ + 0, /*tp_getset*/ + 0, /*tp_base*/ + 0, /*tp_dict*/ + 0, /*tp_descr_get*/ + 0, /*tp_descr_set*/ + 0, /*tp_dictoffset*/ + 0, /*tp_init*/ + 0, /*tp_alloc*/ + __pyx_tp_new_6ctabix_Parser, /*tp_new*/ + 0, /*tp_free*/ + 0, /*tp_is_gc*/ + 0, /*tp_bases*/ + 0, /*tp_mro*/ + 0, /*tp_cache*/ + 0, /*tp_subclasses*/ + 0, /*tp_weaklist*/ + 0, /*tp_del*/ + #if PY_VERSION_HEX >= 0x02060000 + 0, /*tp_version_tag*/ + #endif +}; + +static PyObject *__pyx_tp_new_6ctabix_TabixIterator(PyTypeObject *t, PyObject *a, PyObject *k) { + PyObject *o = (*t->tp_alloc)(t, 0); + if (!o) return 0; + if (__pyx_pf_6ctabix_13TabixIterator___cinit__(o, a, k) < 0) { + Py_DECREF(o); o = 0; + } + return o; +} + +static void __pyx_tp_dealloc_6ctabix_TabixIterator(PyObject *o) { + { + PyObject *etype, *eval, *etb; + PyErr_Fetch(&etype, &eval, &etb); + ++Py_REFCNT(o); + 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/*mp_length*/ + 0, /*mp_subscript*/ + 0, /*mp_ass_subscript*/ +}; + +static PyBufferProcs __pyx_tp_as_buffer_TabixIterator = { + #if PY_MAJOR_VERSION < 3 + 0, /*bf_getreadbuffer*/ + #endif + #if PY_MAJOR_VERSION < 3 + 0, /*bf_getwritebuffer*/ + #endif + #if PY_MAJOR_VERSION < 3 + 0, /*bf_getsegcount*/ + #endif + #if PY_MAJOR_VERSION < 3 + 0, /*bf_getcharbuffer*/ + #endif + #if PY_VERSION_HEX >= 0x02060000 + 0, /*bf_getbuffer*/ + #endif + #if PY_VERSION_HEX >= 0x02060000 + 0, /*bf_releasebuffer*/ + #endif +}; + +PyTypeObject __pyx_type_6ctabix_TabixIterator = { + PyVarObject_HEAD_INIT(0, 0) + __Pyx_NAMESTR("ctabix.TabixIterator"), /*tp_name*/ + sizeof(struct __pyx_obj_6ctabix_TabixIterator), /*tp_basicsize*/ + 0, /*tp_itemsize*/ + __pyx_tp_dealloc_6ctabix_TabixIterator, /*tp_dealloc*/ + 0, /*tp_print*/ + 0, /*tp_getattr*/ + 0, /*tp_setattr*/ + #if PY_MAJOR_VERSION < 3 + 0, /*tp_compare*/ + #else + 0, /*reserved*/ + #endif + 0, /*tp_repr*/ + &__pyx_tp_as_number_TabixIterator, /*tp_as_number*/ + &__pyx_tp_as_sequence_TabixIterator, /*tp_as_sequence*/ + &__pyx_tp_as_mapping_TabixIterator, /*tp_as_mapping*/ + 0, /*tp_hash*/ + 0, /*tp_call*/ + 0, /*tp_str*/ + 0, /*tp_getattro*/ + 0, /*tp_setattro*/ + &__pyx_tp_as_buffer_TabixIterator, /*tp_as_buffer*/ + Py_TPFLAGS_DEFAULT|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_NEWBUFFER, /*tp_flags*/ + __Pyx_DOCSTR("iterates over rows in *tabixfile* in region\n given by *tid*, *start* and *end*.\n "), /*tp_doc*/ + 0, /*tp_traverse*/ + 0, /*tp_clear*/ + 0, /*tp_richcompare*/ + 0, /*tp_weaklistoffset*/ + __pyx_pf_6ctabix_13TabixIterator___iter__, /*tp_iter*/ + __pyx_pf_6ctabix_13TabixIterator___next__, /*tp_iternext*/ + __pyx_methods_6ctabix_TabixIterator, /*tp_methods*/ + 0, /*tp_members*/ + 0, /*tp_getset*/ + 0, /*tp_base*/ + 0, /*tp_dict*/ + 0, /*tp_descr_get*/ + 0, /*tp_descr_set*/ + 0, /*tp_dictoffset*/ + 0, /*tp_init*/ + 0, /*tp_alloc*/ + __pyx_tp_new_6ctabix_TabixIterator, /*tp_new*/ + 0, /*tp_free*/ + 0, /*tp_is_gc*/ + 0, /*tp_bases*/ + 0, /*tp_mro*/ + 0, /*tp_cache*/ + 0, /*tp_subclasses*/ + 0, /*tp_weaklist*/ + 0, /*tp_del*/ + #if PY_VERSION_HEX >= 0x02060000 + 0, /*tp_version_tag*/ + #endif +}; + +static PyObject *__pyx_tp_new_6ctabix_TabixHeaderIterator(PyTypeObject *t, PyObject *a, PyObject *k) { + PyObject *o = (*t->tp_alloc)(t, 0); + if (!o) return 0; + if (__pyx_pf_6ctabix_19TabixHeaderIterator___cinit__(o, a, k) < 0) { + Py_DECREF(o); o = 0; + } + return o; +} + +static void __pyx_tp_dealloc_6ctabix_TabixHeaderIterator(PyObject *o) { + { + PyObject *etype, *eval, *etb; + PyErr_Fetch(&etype, &eval, &etb); + ++Py_REFCNT(o); + __pyx_pf_6ctabix_19TabixHeaderIterator___dealloc__(o); + if (PyErr_Occurred()) PyErr_WriteUnraisable(o); + --Py_REFCNT(o); + PyErr_Restore(etype, eval, etb); + } + (*Py_TYPE(o)->tp_free)(o); +} + +static PyMethodDef __pyx_methods_6ctabix_TabixHeaderIterator[] = { + {__Pyx_NAMESTR("__next__"), (PyCFunction)__pyx_pf_6ctabix_19TabixHeaderIterator___next__, METH_NOARGS|METH_COEXIST, __Pyx_DOCSTR(__pyx_doc_6ctabix_19TabixHeaderIterator___next__)}, + {0, 0, 0, 0} +}; + +static PyNumberMethods __pyx_tp_as_number_TabixHeaderIterator = { + 0, /*nb_add*/ + 0, /*nb_subtract*/ + 0, /*nb_multiply*/ + #if PY_MAJOR_VERSION < 3 + 0, /*nb_divide*/ + #endif + 0, /*nb_remainder*/ + 0, /*nb_divmod*/ + 0, /*nb_power*/ + 0, /*nb_negative*/ + 0, /*nb_positive*/ + 0, /*nb_absolute*/ + 0, /*nb_nonzero*/ + 0, /*nb_invert*/ + 0, /*nb_lshift*/ + 0, /*nb_rshift*/ + 0, /*nb_and*/ + 0, /*nb_xor*/ + 0, /*nb_or*/ + #if PY_MAJOR_VERSION < 3 + 0, /*nb_coerce*/ + #endif + 0, /*nb_int*/ + #if PY_MAJOR_VERSION < 3 + 0, /*nb_long*/ + #else + 0, /*reserved*/ + #endif + 0, /*nb_float*/ + #if PY_MAJOR_VERSION < 3 + 0, /*nb_oct*/ + #endif + #if PY_MAJOR_VERSION < 3 + 0, /*nb_hex*/ + #endif + 0, /*nb_inplace_add*/ + 0, /*nb_inplace_subtract*/ + 0, /*nb_inplace_multiply*/ + #if PY_MAJOR_VERSION < 3 + 0, /*nb_inplace_divide*/ + #endif + 0, /*nb_inplace_remainder*/ + 0, /*nb_inplace_power*/ + 0, /*nb_inplace_lshift*/ + 0, /*nb_inplace_rshift*/ + 0, /*nb_inplace_and*/ + 0, /*nb_inplace_xor*/ + 0, /*nb_inplace_or*/ + 0, /*nb_floor_divide*/ + 0, /*nb_true_divide*/ + 0, /*nb_inplace_floor_divide*/ + 0, /*nb_inplace_true_divide*/ + #if PY_VERSION_HEX >= 0x02050000 + 0, /*nb_index*/ + #endif +}; + +static PySequenceMethods __pyx_tp_as_sequence_TabixHeaderIterator = { + 0, /*sq_length*/ + 0, /*sq_concat*/ + 0, /*sq_repeat*/ + 0, /*sq_item*/ + 0, /*sq_slice*/ + 0, /*sq_ass_item*/ + 0, /*sq_ass_slice*/ + 0, /*sq_contains*/ + 0, /*sq_inplace_concat*/ + 0, /*sq_inplace_repeat*/ +}; + +static PyMappingMethods __pyx_tp_as_mapping_TabixHeaderIterator = { + 0, /*mp_length*/ + 0, /*mp_subscript*/ + 0, /*mp_ass_subscript*/ +}; + +static PyBufferProcs __pyx_tp_as_buffer_TabixHeaderIterator = { + #if PY_MAJOR_VERSION < 3 + 0, /*bf_getreadbuffer*/ + #endif + #if PY_MAJOR_VERSION < 3 + 0, /*bf_getwritebuffer*/ + #endif + #if PY_MAJOR_VERSION < 3 + 0, /*bf_getsegcount*/ + #endif + #if PY_MAJOR_VERSION < 3 + 0, /*bf_getcharbuffer*/ + #endif + #if PY_VERSION_HEX >= 0x02060000 + 0, /*bf_getbuffer*/ + #endif + #if PY_VERSION_HEX >= 0x02060000 + 0, /*bf_releasebuffer*/ + #endif +}; + +PyTypeObject __pyx_type_6ctabix_TabixHeaderIterator = { + PyVarObject_HEAD_INIT(0, 0) + __Pyx_NAMESTR("ctabix.TabixHeaderIterator"), /*tp_name*/ + sizeof(struct __pyx_obj_6ctabix_TabixHeaderIterator), /*tp_basicsize*/ + 0, /*tp_itemsize*/ + __pyx_tp_dealloc_6ctabix_TabixHeaderIterator, /*tp_dealloc*/ + 0, /*tp_print*/ + 0, /*tp_getattr*/ + 0, /*tp_setattr*/ + #if PY_MAJOR_VERSION < 3 + 0, /*tp_compare*/ + #else + 0, /*reserved*/ + #endif + 0, /*tp_repr*/ + &__pyx_tp_as_number_TabixHeaderIterator, /*tp_as_number*/ + &__pyx_tp_as_sequence_TabixHeaderIterator, /*tp_as_sequence*/ + &__pyx_tp_as_mapping_TabixHeaderIterator, /*tp_as_mapping*/ + 0, /*tp_hash*/ + 0, /*tp_call*/ + 0, /*tp_str*/ + 0, /*tp_getattro*/ + 0, /*tp_setattro*/ + &__pyx_tp_as_buffer_TabixHeaderIterator, /*tp_as_buffer*/ + Py_TPFLAGS_DEFAULT|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_NEWBUFFER, /*tp_flags*/ + __Pyx_DOCSTR("return header lines.\n "), /*tp_doc*/ + 0, /*tp_traverse*/ + 0, /*tp_clear*/ + 0, /*tp_richcompare*/ + 0, /*tp_weaklistoffset*/ + __pyx_pf_6ctabix_19TabixHeaderIterator___iter__, /*tp_iter*/ + __pyx_pf_6ctabix_19TabixHeaderIterator___next__, /*tp_iternext*/ + __pyx_methods_6ctabix_TabixHeaderIterator, /*tp_methods*/ + 0, /*tp_members*/ + 0, /*tp_getset*/ + 0, /*tp_base*/ + 0, /*tp_dict*/ + 0, /*tp_descr_get*/ + 0, /*tp_descr_set*/ + 0, /*tp_dictoffset*/ + 0, /*tp_init*/ + 0, /*tp_alloc*/ + __pyx_tp_new_6ctabix_TabixHeaderIterator, /*tp_new*/ + 0, /*tp_free*/ + 0, /*tp_is_gc*/ + 0, /*tp_bases*/ + 0, /*tp_mro*/ + 0, /*tp_cache*/ + 0, /*tp_subclasses*/ + 0, /*tp_weaklist*/ + 0, /*tp_del*/ + #if PY_VERSION_HEX >= 0x02060000 + 0, /*tp_version_tag*/ + #endif +}; + +static PyObject *__pyx_tp_new_6ctabix_asTuple(PyTypeObject *t, PyObject *a, PyObject *k) { + PyObject *o = __pyx_tp_new_6ctabix_Parser(t, a, k); + if (!o) return 0; + return o; +} + +static PyMethodDef __pyx_methods_6ctabix_asTuple[] = { + {0, 0, 0, 0} +}; + +static PyNumberMethods __pyx_tp_as_number_asTuple = { + 0, /*nb_add*/ + 0, /*nb_subtract*/ + 0, /*nb_multiply*/ + #if PY_MAJOR_VERSION < 3 + 0, /*nb_divide*/ + #endif + 0, /*nb_remainder*/ + 0, /*nb_divmod*/ + 0, /*nb_power*/ + 0, /*nb_negative*/ + 0, /*nb_positive*/ + 0, /*nb_absolute*/ + 0, /*nb_nonzero*/ + 0, /*nb_invert*/ + 0, /*nb_lshift*/ + 0, /*nb_rshift*/ + 0, /*nb_and*/ + 0, /*nb_xor*/ + 0, /*nb_or*/ + #if PY_MAJOR_VERSION < 3 + 0, /*nb_coerce*/ + #endif + 0, /*nb_int*/ + #if PY_MAJOR_VERSION < 3 + 0, /*nb_long*/ + #else + 0, /*reserved*/ + #endif + 0, /*nb_float*/ + #if PY_MAJOR_VERSION < 3 + 0, /*nb_oct*/ + #endif + #if PY_MAJOR_VERSION < 3 + 0, /*nb_hex*/ + #endif + 0, /*nb_inplace_add*/ + 0, /*nb_inplace_subtract*/ + 0, /*nb_inplace_multiply*/ + #if PY_MAJOR_VERSION < 3 + 0, /*nb_inplace_divide*/ + #endif + 0, /*nb_inplace_remainder*/ + 0, /*nb_inplace_power*/ + 0, /*nb_inplace_lshift*/ + 0, /*nb_inplace_rshift*/ + 0, /*nb_inplace_and*/ + 0, /*nb_inplace_xor*/ + 0, /*nb_inplace_or*/ + 0, /*nb_floor_divide*/ + 0, /*nb_true_divide*/ + 0, /*nb_inplace_floor_divide*/ + 0, /*nb_inplace_true_divide*/ + #if PY_VERSION_HEX >= 0x02050000 + 0, /*nb_index*/ + #endif +}; + +static PySequenceMethods __pyx_tp_as_sequence_asTuple = { + 0, /*sq_length*/ + 0, /*sq_concat*/ + 0, /*sq_repeat*/ + 0, /*sq_item*/ + 0, /*sq_slice*/ + 0, /*sq_ass_item*/ + 0, /*sq_ass_slice*/ + 0, /*sq_contains*/ + 0, /*sq_inplace_concat*/ + 0, /*sq_inplace_repeat*/ +}; + +static PyMappingMethods __pyx_tp_as_mapping_asTuple = { + 0, /*mp_length*/ + 0, /*mp_subscript*/ + 0, /*mp_ass_subscript*/ +}; + +static PyBufferProcs __pyx_tp_as_buffer_asTuple = { + #if PY_MAJOR_VERSION < 3 + 0, /*bf_getreadbuffer*/ + #endif + #if PY_MAJOR_VERSION < 3 + 0, /*bf_getwritebuffer*/ + #endif + #if PY_MAJOR_VERSION < 3 + 0, /*bf_getsegcount*/ + #endif + #if PY_MAJOR_VERSION < 3 + 0, /*bf_getcharbuffer*/ + #endif + #if PY_VERSION_HEX >= 0x02060000 + 0, /*bf_getbuffer*/ + #endif + #if PY_VERSION_HEX >= 0x02060000 + 0, /*bf_releasebuffer*/ + #endif +}; + +PyTypeObject __pyx_type_6ctabix_asTuple = { + PyVarObject_HEAD_INIT(0, 0) + __Pyx_NAMESTR("ctabix.asTuple"), /*tp_name*/ + sizeof(struct __pyx_obj_6ctabix_asTuple), /*tp_basicsize*/ + 0, /*tp_itemsize*/ + __pyx_tp_dealloc_6ctabix_Parser, /*tp_dealloc*/ + 0, /*tp_print*/ + 0, /*tp_getattr*/ + 0, /*tp_setattr*/ + #if PY_MAJOR_VERSION < 3 + 0, /*tp_compare*/ + #else + 0, /*reserved*/ + #endif + 0, /*tp_repr*/ + &__pyx_tp_as_number_asTuple, /*tp_as_number*/ + &__pyx_tp_as_sequence_asTuple, /*tp_as_sequence*/ + &__pyx_tp_as_mapping_asTuple, /*tp_as_mapping*/ + 0, /*tp_hash*/ + __pyx_pf_6ctabix_7asTuple___call__, /*tp_call*/ + 0, /*tp_str*/ + 0, /*tp_getattro*/ + 0, /*tp_setattro*/ + &__pyx_tp_as_buffer_asTuple, /*tp_as_buffer*/ + Py_TPFLAGS_DEFAULT|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_NEWBUFFER, /*tp_flags*/ + __Pyx_DOCSTR("converts a :term:`tabix row` into a python tuple."), /*tp_doc*/ + 0, /*tp_traverse*/ + 0, /*tp_clear*/ + 0, /*tp_richcompare*/ + 0, /*tp_weaklistoffset*/ + 0, /*tp_iter*/ + 0, /*tp_iternext*/ + __pyx_methods_6ctabix_asTuple, /*tp_methods*/ + 0, /*tp_members*/ + 0, /*tp_getset*/ + 0, /*tp_base*/ + 0, /*tp_dict*/ + 0, /*tp_descr_get*/ + 0, /*tp_descr_set*/ + 0, /*tp_dictoffset*/ + 0, /*tp_init*/ + 0, /*tp_alloc*/ + __pyx_tp_new_6ctabix_asTuple, /*tp_new*/ + 0, /*tp_free*/ + 0, /*tp_is_gc*/ + 0, /*tp_bases*/ + 0, /*tp_mro*/ + 0, /*tp_cache*/ + 0, /*tp_subclasses*/ + 0, /*tp_weaklist*/ + 0, /*tp_del*/ + #if PY_VERSION_HEX >= 0x02060000 + 0, /*tp_version_tag*/ + #endif +}; + +static PyObject *__pyx_tp_new_6ctabix_asGTF(PyTypeObject *t, PyObject *a, PyObject *k) { + PyObject *o = __pyx_tp_new_6ctabix_Parser(t, a, k); + if (!o) return 0; + return o; +} + +static PyMethodDef __pyx_methods_6ctabix_asGTF[] = { + {0, 0, 0, 0} +}; + +static PyNumberMethods __pyx_tp_as_number_asGTF = { + 0, /*nb_add*/ + 0, /*nb_subtract*/ + 0, /*nb_multiply*/ + #if PY_MAJOR_VERSION < 3 + 0, /*nb_divide*/ + #endif + 0, /*nb_remainder*/ + 0, /*nb_divmod*/ + 0, /*nb_power*/ + 0, /*nb_negative*/ + 0, /*nb_positive*/ + 0, /*nb_absolute*/ + 0, /*nb_nonzero*/ + 0, /*nb_invert*/ + 0, /*nb_lshift*/ + 0, /*nb_rshift*/ + 0, /*nb_and*/ + 0, /*nb_xor*/ + 0, /*nb_or*/ + #if PY_MAJOR_VERSION < 3 + 0, /*nb_coerce*/ + #endif + 0, /*nb_int*/ + #if PY_MAJOR_VERSION < 3 + 0, /*nb_long*/ + #else + 0, /*reserved*/ + #endif + 0, /*nb_float*/ + #if PY_MAJOR_VERSION < 3 + 0, /*nb_oct*/ + #endif + #if PY_MAJOR_VERSION < 3 + 0, /*nb_hex*/ + #endif + 0, /*nb_inplace_add*/ + 0, /*nb_inplace_subtract*/ + 0, /*nb_inplace_multiply*/ + #if PY_MAJOR_VERSION < 3 + 0, /*nb_inplace_divide*/ + #endif + 0, /*nb_inplace_remainder*/ + 0, /*nb_inplace_power*/ + 0, /*nb_inplace_lshift*/ + 0, /*nb_inplace_rshift*/ + 0, /*nb_inplace_and*/ + 0, /*nb_inplace_xor*/ + 0, /*nb_inplace_or*/ + 0, /*nb_floor_divide*/ + 0, /*nb_true_divide*/ + 0, /*nb_inplace_floor_divide*/ + 0, /*nb_inplace_true_divide*/ + #if PY_VERSION_HEX >= 0x02050000 + 0, /*nb_index*/ + #endif +}; + +static PySequenceMethods __pyx_tp_as_sequence_asGTF = { + 0, /*sq_length*/ + 0, /*sq_concat*/ + 0, /*sq_repeat*/ + 0, /*sq_item*/ + 0, /*sq_slice*/ + 0, /*sq_ass_item*/ + 0, /*sq_ass_slice*/ + 0, /*sq_contains*/ + 0, /*sq_inplace_concat*/ + 0, /*sq_inplace_repeat*/ +}; + +static PyMappingMethods __pyx_tp_as_mapping_asGTF = { + 0, /*mp_length*/ + 0, /*mp_subscript*/ + 0, /*mp_ass_subscript*/ +}; + +static PyBufferProcs __pyx_tp_as_buffer_asGTF = { + #if PY_MAJOR_VERSION < 3 + 0, /*bf_getreadbuffer*/ + #endif + #if PY_MAJOR_VERSION < 3 + 0, /*bf_getwritebuffer*/ + #endif + #if PY_MAJOR_VERSION < 3 + 0, /*bf_getsegcount*/ + #endif + #if PY_MAJOR_VERSION < 3 + 0, /*bf_getcharbuffer*/ + #endif + #if PY_VERSION_HEX >= 0x02060000 + 0, /*bf_getbuffer*/ + #endif + #if PY_VERSION_HEX >= 0x02060000 + 0, /*bf_releasebuffer*/ + #endif +}; + +PyTypeObject __pyx_type_6ctabix_asGTF = { + PyVarObject_HEAD_INIT(0, 0) + __Pyx_NAMESTR("ctabix.asGTF"), /*tp_name*/ + sizeof(struct __pyx_obj_6ctabix_asGTF), /*tp_basicsize*/ + 0, /*tp_itemsize*/ + __pyx_tp_dealloc_6ctabix_Parser, /*tp_dealloc*/ + 0, /*tp_print*/ + 0, /*tp_getattr*/ + 0, /*tp_setattr*/ + #if PY_MAJOR_VERSION < 3 + 0, /*tp_compare*/ + #else + 0, /*reserved*/ + #endif + 0, /*tp_repr*/ + &__pyx_tp_as_number_asGTF, /*tp_as_number*/ + &__pyx_tp_as_sequence_asGTF, /*tp_as_sequence*/ + &__pyx_tp_as_mapping_asGTF, /*tp_as_mapping*/ + 0, /*tp_hash*/ + __pyx_pf_6ctabix_5asGTF___call__, /*tp_call*/ + 0, /*tp_str*/ + 0, /*tp_getattro*/ + 0, /*tp_setattro*/ + &__pyx_tp_as_buffer_asGTF, /*tp_as_buffer*/ + Py_TPFLAGS_DEFAULT|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_NEWBUFFER, /*tp_flags*/ + __Pyx_DOCSTR("converts a :term:`tabix row` into a GTF record."), /*tp_doc*/ + 0, /*tp_traverse*/ + 0, /*tp_clear*/ + 0, /*tp_richcompare*/ + 0, /*tp_weaklistoffset*/ + 0, /*tp_iter*/ + 0, /*tp_iternext*/ + __pyx_methods_6ctabix_asGTF, /*tp_methods*/ + 0, /*tp_members*/ + 0, /*tp_getset*/ + 0, /*tp_base*/ + 0, /*tp_dict*/ + 0, /*tp_descr_get*/ + 0, /*tp_descr_set*/ + 0, /*tp_dictoffset*/ + 0, /*tp_init*/ + 0, /*tp_alloc*/ + __pyx_tp_new_6ctabix_asGTF, /*tp_new*/ + 0, /*tp_free*/ + 0, /*tp_is_gc*/ + 0, /*tp_bases*/ + 0, /*tp_mro*/ + 0, /*tp_cache*/ + 0, /*tp_subclasses*/ + 0, /*tp_weaklist*/ + 0, /*tp_del*/ + #if PY_VERSION_HEX >= 0x02060000 + 0, /*tp_version_tag*/ + #endif +}; + +static PyObject *__pyx_tp_new_6ctabix_asBed(PyTypeObject *t, PyObject *a, PyObject *k) { + PyObject *o = __pyx_tp_new_6ctabix_Parser(t, a, k); + if (!o) return 0; + return o; +} + +static PyMethodDef __pyx_methods_6ctabix_asBed[] = { + {0, 0, 0, 0} +}; + +static PyNumberMethods __pyx_tp_as_number_asBed = { + 0, /*nb_add*/ + 0, /*nb_subtract*/ + 0, /*nb_multiply*/ + #if PY_MAJOR_VERSION < 3 + 0, /*nb_divide*/ + #endif + 0, /*nb_remainder*/ + 0, /*nb_divmod*/ + 0, /*nb_power*/ + 0, /*nb_negative*/ + 0, /*nb_positive*/ + 0, /*nb_absolute*/ + 0, /*nb_nonzero*/ + 0, /*nb_invert*/ + 0, /*nb_lshift*/ + 0, /*nb_rshift*/ + 0, /*nb_and*/ + 0, /*nb_xor*/ + 0, /*nb_or*/ + #if PY_MAJOR_VERSION < 3 + 0, /*nb_coerce*/ + #endif + 0, /*nb_int*/ + #if PY_MAJOR_VERSION < 3 + 0, /*nb_long*/ + #else + 0, /*reserved*/ + #endif + 0, /*nb_float*/ + #if PY_MAJOR_VERSION < 3 + 0, /*nb_oct*/ + #endif + #if PY_MAJOR_VERSION < 3 + 0, /*nb_hex*/ + #endif + 0, /*nb_inplace_add*/ + 0, /*nb_inplace_subtract*/ + 0, /*nb_inplace_multiply*/ + #if PY_MAJOR_VERSION < 3 + 0, /*nb_inplace_divide*/ + #endif + 0, /*nb_inplace_remainder*/ + 0, /*nb_inplace_power*/ + 0, /*nb_inplace_lshift*/ + 0, /*nb_inplace_rshift*/ + 0, /*nb_inplace_and*/ + 0, /*nb_inplace_xor*/ + 0, /*nb_inplace_or*/ + 0, /*nb_floor_divide*/ + 0, /*nb_true_divide*/ + 0, /*nb_inplace_floor_divide*/ + 0, /*nb_inplace_true_divide*/ + #if PY_VERSION_HEX >= 0x02050000 + 0, /*nb_index*/ + #endif +}; + +static PySequenceMethods __pyx_tp_as_sequence_asBed = { + 0, /*sq_length*/ + 0, /*sq_concat*/ + 0, /*sq_repeat*/ + 0, /*sq_item*/ + 0, /*sq_slice*/ + 0, /*sq_ass_item*/ + 0, /*sq_ass_slice*/ + 0, /*sq_contains*/ + 0, /*sq_inplace_concat*/ + 0, /*sq_inplace_repeat*/ +}; + +static PyMappingMethods __pyx_tp_as_mapping_asBed = { + 0, /*mp_length*/ + 0, /*mp_subscript*/ + 0, /*mp_ass_subscript*/ +}; + +static PyBufferProcs __pyx_tp_as_buffer_asBed = { + #if PY_MAJOR_VERSION < 3 + 0, /*bf_getreadbuffer*/ + #endif + #if PY_MAJOR_VERSION < 3 + 0, /*bf_getwritebuffer*/ + #endif + #if PY_MAJOR_VERSION < 3 + 0, /*bf_getsegcount*/ + #endif + #if PY_MAJOR_VERSION < 3 + 0, /*bf_getcharbuffer*/ + #endif + #if PY_VERSION_HEX >= 0x02060000 + 0, /*bf_getbuffer*/ + #endif + #if PY_VERSION_HEX >= 0x02060000 + 0, /*bf_releasebuffer*/ + #endif +}; + +PyTypeObject __pyx_type_6ctabix_asBed = { + PyVarObject_HEAD_INIT(0, 0) + __Pyx_NAMESTR("ctabix.asBed"), /*tp_name*/ + sizeof(struct __pyx_obj_6ctabix_asBed), /*tp_basicsize*/ + 0, /*tp_itemsize*/ + __pyx_tp_dealloc_6ctabix_Parser, /*tp_dealloc*/ + 0, /*tp_print*/ + 0, /*tp_getattr*/ + 0, /*tp_setattr*/ + #if PY_MAJOR_VERSION < 3 + 0, /*tp_compare*/ + #else + 0, /*reserved*/ + #endif + 0, /*tp_repr*/ + &__pyx_tp_as_number_asBed, /*tp_as_number*/ + &__pyx_tp_as_sequence_asBed, /*tp_as_sequence*/ + &__pyx_tp_as_mapping_asBed, /*tp_as_mapping*/ + 0, /*tp_hash*/ + __pyx_pf_6ctabix_5asBed___call__, /*tp_call*/ + 0, /*tp_str*/ + 0, /*tp_getattro*/ + 0, /*tp_setattro*/ + &__pyx_tp_as_buffer_asBed, /*tp_as_buffer*/ + Py_TPFLAGS_DEFAULT|Py_TPFLAGS_CHECKTYPES|Py_TPFLAGS_BASETYPE|Py_TPFLAGS_HAVE_NEWBUFFER, /*tp_flags*/ + __Pyx_DOCSTR("converts a :term:`tabix row` into a GTF record."), /*tp_doc*/ + 0, /*tp_traverse*/ + 0, /*tp_clear*/ + 0, /*tp_richcompare*/ + 0, /*tp_weaklistoffset*/ + 0, /*tp_iter*/ + 0, /*tp_iternext*/ + __pyx_methods_6ctabix_asBed, /*tp_methods*/ + 0, /*tp_members*/ + 0, /*tp_getset*/ + 0, /*tp_base*/ + 0, /*tp_dict*/ + 0, /*tp_descr_get*/ + 0, /*tp_descr_set*/ + 0, /*tp_dictoffset*/ + 0, /*tp_init*/ + 0, /*tp_alloc*/ + __pyx_tp_new_6ctabix_asBed, /*tp_new*/ + 0, /*tp_free*/ + 0, /*tp_is_gc*/ + 0, /*tp_bases*/ + 0, /*tp_mro*/ + 0, /*tp_cache*/ + 0, /*tp_subclasses*/ + 0, /*tp_weaklist*/ + 0, /*tp_del*/ + #if PY_VERSION_HEX >= 0x02060000 + 0, /*tp_version_tag*/ + #endif +}; + +static PyObject *__pyx_tp_new_6ctabix_asVCF(PyTypeObject *t, PyObject *a, PyObject *k) { + PyObject *o = __pyx_tp_new_6ctabix_Parser(t, a, k); + if (!o) return 0; + return o; +} + +static PyMethodDef __pyx_methods_6ctabix_asVCF[] = { + {0, 0, 0, 0} +}; + +static PyNumberMethods __pyx_tp_as_number_asVCF = { + 0, /*nb_add*/ + 0, /*nb_subtract*/ + 0, /*nb_multiply*/ + #if PY_MAJOR_VERSION < 3 + 0, /*nb_divide*/ + #endif + 0, /*nb_remainder*/ + 0, /*nb_divmod*/ + 0, /*nb_power*/ + 0, /*nb_negative*/ + 0, /*nb_positive*/ + 0, /*nb_absolute*/ + 0, /*nb_nonzero*/ + 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0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + if (__pyx_module_is_main_ctabix) { + if (__Pyx_SetAttrString(__pyx_m, "__name__", __pyx_n_s____main__) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;}; + } + /*--- Builtin init code ---*/ + if (unlikely(__Pyx_InitCachedBuiltins() < 0)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + /*--- Global init code ---*/ + /*--- Function export code ---*/ + /*--- Type init code ---*/ + if (PyType_Ready(&__pyx_type_6ctabix_Tabixfile) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 8; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + if (__Pyx_SetAttrString(__pyx_m, "Tabixfile", (PyObject *)&__pyx_type_6ctabix_Tabixfile) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 8; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_ptype_6ctabix_Tabixfile = &__pyx_type_6ctabix_Tabixfile; + if (PyType_Ready(&__pyx_type_6ctabix_Parser) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 264; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + if (__Pyx_SetAttrString(__pyx_m, "Parser", (PyObject *)&__pyx_type_6ctabix_Parser) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 264; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_ptype_6ctabix_Parser = &__pyx_type_6ctabix_Parser; + if (PyType_Ready(&__pyx_type_6ctabix_TabixIterator) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 161; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + { + PyObject *wrapper = __Pyx_GetAttrString((PyObject *)&__pyx_type_6ctabix_TabixIterator, "__next__"); if (unlikely(!wrapper)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 161; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + if (Py_TYPE(wrapper) == &PyWrapperDescr_Type) { + __pyx_wrapperbase_6ctabix_13TabixIterator___next__ = *((PyWrapperDescrObject *)wrapper)->d_base; + __pyx_wrapperbase_6ctabix_13TabixIterator___next__.doc = __pyx_doc_6ctabix_13TabixIterator___next__; + ((PyWrapperDescrObject *)wrapper)->d_base = &__pyx_wrapperbase_6ctabix_13TabixIterator___next__; + } + } + if (__Pyx_SetAttrString(__pyx_m, "TabixIterator", (PyObject *)&__pyx_type_6ctabix_TabixIterator) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 161; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_ptype_6ctabix_TabixIterator = &__pyx_type_6ctabix_TabixIterator; + if (PyType_Ready(&__pyx_type_6ctabix_TabixHeaderIterator) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 216; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + { + PyObject *wrapper = __Pyx_GetAttrString((PyObject *)&__pyx_type_6ctabix_TabixHeaderIterator, "__next__"); if (unlikely(!wrapper)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 216; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + if (Py_TYPE(wrapper) == &PyWrapperDescr_Type) { + __pyx_wrapperbase_6ctabix_19TabixHeaderIterator___next__ = *((PyWrapperDescrObject *)wrapper)->d_base; + __pyx_wrapperbase_6ctabix_19TabixHeaderIterator___next__.doc = __pyx_doc_6ctabix_19TabixHeaderIterator___next__; + ((PyWrapperDescrObject *)wrapper)->d_base = &__pyx_wrapperbase_6ctabix_19TabixHeaderIterator___next__; + } + } + if (__Pyx_SetAttrString(__pyx_m, "TabixHeaderIterator", (PyObject *)&__pyx_type_6ctabix_TabixHeaderIterator) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 216; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_ptype_6ctabix_TabixHeaderIterator = &__pyx_type_6ctabix_TabixHeaderIterator; + __pyx_type_6ctabix_asTuple.tp_base = __pyx_ptype_6ctabix_Parser; + if (PyType_Ready(&__pyx_type_6ctabix_asTuple) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 267; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + if (__Pyx_SetAttrString(__pyx_m, "asTuple", (PyObject *)&__pyx_type_6ctabix_asTuple) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 267; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __pyx_ptype_6ctabix_asTuple = &__pyx_type_6ctabix_asTuple; + 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{__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_2); + __pyx_t_3 = __Pyx_GetAttrString(__pyx_t_2, "__doc__"); if (unlikely(!__pyx_t_3)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_GOTREF(__pyx_t_3); + __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0; + if (PyDict_SetItem(__pyx_t_1, ((PyObject *)__pyx_kp_u_37), __pyx_t_3) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0; + if (PyObject_SetAttr(__pyx_m, __pyx_n_s____test__, ((PyObject *)__pyx_t_1)) < 0) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 1; __pyx_clineno = __LINE__; goto __pyx_L1_error;} + __Pyx_DECREF(((PyObject *)__pyx_t_1)); __pyx_t_1 = 0; + + /* "/ifs/apps/apps/python-2.7.1/lib/python2.7/site-packages/Cython-0.13-py2.7-linux-x86_64.egg/Cython/Includes/cpython/type.pxd":2 + * + * cdef extern from "Python.h": # <<<<<<<<<<<<<< + * # The C structure of the objects used to describe built-in types. + * + */ + goto __pyx_L0; + __pyx_L1_error:; + __Pyx_XDECREF(__pyx_t_1); + __Pyx_XDECREF(__pyx_t_2); + __Pyx_XDECREF(__pyx_t_3); + if (__pyx_m) { + __Pyx_AddTraceback("init ctabix"); + Py_DECREF(__pyx_m); __pyx_m = 0; + } else if (!PyErr_Occurred()) { + PyErr_SetString(PyExc_ImportError, "init ctabix"); + } + __pyx_L0:; + __Pyx_RefNannyFinishContext(); + #if PY_MAJOR_VERSION < 3 + return; + #else + return __pyx_m; + #endif +} + +/* Runtime support code */ + +static PyObject *__Pyx_GetName(PyObject *dict, PyObject *name) { + PyObject *result; + result = PyObject_GetAttr(dict, name); + if (!result) + PyErr_SetObject(PyExc_NameError, name); + return result; +} + +static CYTHON_INLINE int __Pyx_CheckKeywordStrings( + PyObject *kwdict, + const char* function_name, + int kw_allowed) +{ + PyObject* key = 0; + Py_ssize_t pos = 0; + while (PyDict_Next(kwdict, &pos, &key, 0)) { + #if PY_MAJOR_VERSION < 3 + if (unlikely(!PyString_CheckExact(key)) && unlikely(!PyString_Check(key))) + #else + if (unlikely(!PyUnicode_CheckExact(key)) && unlikely(!PyUnicode_Check(key))) + #endif + goto invalid_keyword_type; + } + if ((!kw_allowed) && unlikely(key)) + goto invalid_keyword; + return 1; +invalid_keyword_type: + PyErr_Format(PyExc_TypeError, + "%s() keywords must be strings", function_name); + return 0; +invalid_keyword: + PyErr_Format(PyExc_TypeError, + #if PY_MAJOR_VERSION < 3 + "%s() got an unexpected keyword argument '%s'", + function_name, PyString_AsString(key)); + #else + "%s() got an unexpected keyword argument '%U'", + function_name, key); + #endif + return 0; +} + +static void __Pyx_RaiseDoubleKeywordsError( + const char* func_name, + PyObject* kw_name) +{ + PyErr_Format(PyExc_TypeError, + #if PY_MAJOR_VERSION >= 3 + "%s() got multiple values for keyword argument '%U'", func_name, kw_name); + #else + "%s() got multiple values for keyword argument '%s'", func_name, + PyString_AS_STRING(kw_name)); + #endif +} + +static void __Pyx_RaiseArgtupleInvalid( + const char* func_name, + int exact, + Py_ssize_t num_min, + Py_ssize_t num_max, + Py_ssize_t num_found) +{ + Py_ssize_t num_expected; + const char *number, *more_or_less; + + if (num_found < num_min) { + num_expected = num_min; + more_or_less = "at least"; + } else { + num_expected = num_max; + more_or_less = "at most"; + } + if (exact) { + more_or_less = "exactly"; + } + number = (num_expected == 1) ? "" : "s"; + PyErr_Format(PyExc_TypeError, + #if PY_VERSION_HEX < 0x02050000 + "%s() takes %s %d positional argument%s (%d given)", + #else + "%s() takes %s %zd positional argument%s (%zd given)", + #endif + func_name, more_or_less, num_expected, number, num_found); +} + +static int __Pyx_ParseOptionalKeywords( + PyObject *kwds, + PyObject **argnames[], + PyObject *kwds2, + PyObject *values[], + Py_ssize_t num_pos_args, + const char* function_name) +{ + PyObject *key = 0, *value = 0; + Py_ssize_t pos = 0; + PyObject*** name; + PyObject*** first_kw_arg = argnames + num_pos_args; + + while (PyDict_Next(kwds, &pos, &key, &value)) { + name = first_kw_arg; + while (*name && (**name != key)) name++; + if (*name) { + values[name-argnames] = value; + } else { + #if PY_MAJOR_VERSION < 3 + if (unlikely(!PyString_CheckExact(key)) && unlikely(!PyString_Check(key))) { + #else + if (unlikely(!PyUnicode_CheckExact(key)) && unlikely(!PyUnicode_Check(key))) { + #endif + goto invalid_keyword_type; + } else { + for (name = first_kw_arg; *name; name++) { + #if PY_MAJOR_VERSION >= 3 + if (PyUnicode_GET_SIZE(**name) == PyUnicode_GET_SIZE(key) && + PyUnicode_Compare(**name, key) == 0) break; + #else + if (PyString_GET_SIZE(**name) == PyString_GET_SIZE(key) && + _PyString_Eq(**name, key)) break; + #endif + } + if (*name) { + values[name-argnames] = value; + } else { + /* unexpected keyword found */ + for (name=argnames; name != first_kw_arg; name++) { + if (**name == key) goto arg_passed_twice; + #if PY_MAJOR_VERSION >= 3 + if (PyUnicode_GET_SIZE(**name) == PyUnicode_GET_SIZE(key) && + PyUnicode_Compare(**name, key) == 0) goto arg_passed_twice; + #else + if (PyString_GET_SIZE(**name) == PyString_GET_SIZE(key) && + _PyString_Eq(**name, key)) goto arg_passed_twice; + #endif + } + if (kwds2) { + if (unlikely(PyDict_SetItem(kwds2, key, value))) goto bad; + } else { + goto invalid_keyword; + } + } + } + } + } + return 0; +arg_passed_twice: + __Pyx_RaiseDoubleKeywordsError(function_name, **name); + goto bad; +invalid_keyword_type: + PyErr_Format(PyExc_TypeError, + "%s() keywords must be strings", function_name); + goto bad; +invalid_keyword: + PyErr_Format(PyExc_TypeError, + #if PY_MAJOR_VERSION < 3 + "%s() got an unexpected keyword argument '%s'", + function_name, PyString_AsString(key)); + #else + "%s() got an unexpected keyword argument '%U'", + function_name, key); + #endif +bad: + return -1; +} + + +static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) { + PyErr_Format(PyExc_ValueError, + #if PY_VERSION_HEX < 0x02050000 + "need more than %d value%s to unpack", (int)index, + #else + "need more than %zd value%s to unpack", index, + #endif + (index == 1) ? "" : "s"); +} + +static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) { + PyErr_Format(PyExc_ValueError, + #if PY_VERSION_HEX < 0x02050000 + "too many values to unpack (expected %d)", (int)expected); + #else + "too many values to unpack (expected %zd)", expected); + #endif +} + +static PyObject *__Pyx_UnpackItem(PyObject *iter, Py_ssize_t index) { + PyObject *item; + if (!(item = PyIter_Next(iter))) { + if (!PyErr_Occurred()) { + __Pyx_RaiseNeedMoreValuesError(index); + } + } + return item; +} + +static int __Pyx_EndUnpack(PyObject *iter, Py_ssize_t expected) { + PyObject *item; + if ((item = PyIter_Next(iter))) { + Py_DECREF(item); + __Pyx_RaiseTooManyValuesError(expected); + return -1; + } + else if (!PyErr_Occurred()) + return 0; + else + return -1; +} + +static int __Pyx_ArgTypeTest(PyObject *obj, PyTypeObject *type, int none_allowed, + const char *name, int exact) +{ + if (!type) { + PyErr_Format(PyExc_SystemError, "Missing type object"); + return 0; + } + if (none_allowed && obj == Py_None) return 1; + else if (exact) { + if (Py_TYPE(obj) == type) return 1; + } + else { + if (PyObject_TypeCheck(obj, type)) return 1; + } + PyErr_Format(PyExc_TypeError, + "Argument '%s' has incorrect type (expected %s, got %s)", + name, type->tp_name, Py_TYPE(obj)->tp_name); + return 0; +} + +static CYTHON_INLINE void __Pyx_RaiseNoneIndexingError(void) { + PyErr_SetString(PyExc_TypeError, "'NoneType' object is unsubscriptable"); +} + +static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) { + PyObject *local_type, *local_value, *local_tb; + PyObject *tmp_type, *tmp_value, *tmp_tb; + PyThreadState *tstate = PyThreadState_GET(); + local_type = tstate->curexc_type; + local_value = tstate->curexc_value; + local_tb = tstate->curexc_traceback; + tstate->curexc_type = 0; + tstate->curexc_value = 0; + tstate->curexc_traceback = 0; + PyErr_NormalizeException(&local_type, &local_value, &local_tb); + if (unlikely(tstate->curexc_type)) + goto bad; + #if PY_MAJOR_VERSION >= 3 + if (unlikely(PyException_SetTraceback(local_value, local_tb) < 0)) + goto bad; + #endif + *type = local_type; + *value = local_value; + *tb = local_tb; + Py_INCREF(local_type); + Py_INCREF(local_value); + Py_INCREF(local_tb); + tmp_type = tstate->exc_type; + tmp_value = tstate->exc_value; + tmp_tb = tstate->exc_traceback; + tstate->exc_type = local_type; + tstate->exc_value = local_value; + tstate->exc_traceback = local_tb; + /* Make sure tstate is in a consistent state when we XDECREF + these objects (XDECREF may run arbitrary code). */ + Py_XDECREF(tmp_type); + Py_XDECREF(tmp_value); + Py_XDECREF(tmp_tb); + return 0; +bad: + *type = 0; + *value = 0; + *tb = 0; + Py_XDECREF(local_type); + Py_XDECREF(local_value); + Py_XDECREF(local_tb); + return -1; +} + + +static CYTHON_INLINE void __Pyx_ExceptionSave(PyObject **type, PyObject **value, PyObject **tb) { + PyThreadState *tstate = PyThreadState_GET(); + *type = tstate->exc_type; + *value = tstate->exc_value; + *tb = tstate->exc_traceback; + Py_XINCREF(*type); + Py_XINCREF(*value); + Py_XINCREF(*tb); +} + +static void __Pyx_ExceptionReset(PyObject *type, PyObject *value, PyObject *tb) { + PyObject *tmp_type, *tmp_value, *tmp_tb; + PyThreadState *tstate = PyThreadState_GET(); + tmp_type = tstate->exc_type; + tmp_value = tstate->exc_value; + tmp_tb = tstate->exc_traceback; + tstate->exc_type = type; + tstate->exc_value = value; + tstate->exc_traceback = tb; + Py_XDECREF(tmp_type); + Py_XDECREF(tmp_value); + Py_XDECREF(tmp_tb); +} + +static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list) { + PyObject *py_import = 0; + PyObject *empty_list = 0; + PyObject *module = 0; + PyObject *global_dict = 0; + PyObject *empty_dict = 0; + PyObject *list; + py_import = __Pyx_GetAttrString(__pyx_b, "__import__"); + if (!py_import) + goto bad; + if (from_list) + list = from_list; + else { + empty_list = PyList_New(0); + if (!empty_list) + goto bad; + list = empty_list; + } + global_dict = PyModule_GetDict(__pyx_m); + if (!global_dict) + goto bad; + empty_dict = PyDict_New(); + if (!empty_dict) + goto bad; + module = PyObject_CallFunctionObjArgs(py_import, + name, global_dict, empty_dict, list, NULL); +bad: + Py_XDECREF(empty_list); + Py_XDECREF(py_import); + Py_XDECREF(empty_dict); + return module; +} + +static CYTHON_INLINE void __Pyx_ErrRestore(PyObject *type, PyObject *value, PyObject *tb) { + PyObject *tmp_type, *tmp_value, *tmp_tb; + PyThreadState *tstate = PyThreadState_GET(); + + tmp_type = tstate->curexc_type; + tmp_value = tstate->curexc_value; + tmp_tb = tstate->curexc_traceback; + tstate->curexc_type = type; + tstate->curexc_value = value; + tstate->curexc_traceback = tb; + Py_XDECREF(tmp_type); + Py_XDECREF(tmp_value); + Py_XDECREF(tmp_tb); +} + +static CYTHON_INLINE void __Pyx_ErrFetch(PyObject **type, PyObject **value, PyObject **tb) { + PyThreadState *tstate = PyThreadState_GET(); + *type = tstate->curexc_type; + *value = tstate->curexc_value; + *tb = tstate->curexc_traceback; + + tstate->curexc_type = 0; + tstate->curexc_value = 0; + tstate->curexc_traceback = 0; +} + + +#if PY_MAJOR_VERSION < 3 +static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb) { + Py_XINCREF(type); + Py_XINCREF(value); + Py_XINCREF(tb); + /* First, check the traceback argument, replacing None with NULL. */ + if (tb == Py_None) { + Py_DECREF(tb); + tb = 0; + } + else if (tb != NULL && !PyTraceBack_Check(tb)) { + PyErr_SetString(PyExc_TypeError, + "raise: arg 3 must be a traceback or None"); + goto raise_error; + } + /* Next, replace a missing value with None */ + if (value == NULL) { + value = Py_None; + Py_INCREF(value); + } + #if PY_VERSION_HEX < 0x02050000 + if (!PyClass_Check(type)) + #else + if (!PyType_Check(type)) + #endif + { + /* Raising an instance. The value should be a dummy. */ + if (value != Py_None) { + PyErr_SetString(PyExc_TypeError, + "instance exception may not have a separate value"); + goto raise_error; + } + /* Normalize to raise , */ + Py_DECREF(value); + value = type; + #if PY_VERSION_HEX < 0x02050000 + if (PyInstance_Check(type)) { + type = (PyObject*) ((PyInstanceObject*)type)->in_class; + Py_INCREF(type); + } + else { + type = 0; + PyErr_SetString(PyExc_TypeError, + "raise: exception must be an old-style class or instance"); + goto raise_error; + } + #else + type = (PyObject*) Py_TYPE(type); + Py_INCREF(type); + if (!PyType_IsSubtype((PyTypeObject *)type, (PyTypeObject *)PyExc_BaseException)) { + PyErr_SetString(PyExc_TypeError, + "raise: exception class must be a subclass of BaseException"); + goto raise_error; + } + #endif + } + + __Pyx_ErrRestore(type, value, tb); + return; +raise_error: + Py_XDECREF(value); + Py_XDECREF(type); + Py_XDECREF(tb); + return; +} + +#else /* Python 3+ */ + +static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb) { + if (tb == Py_None) { + tb = 0; + } else if (tb && !PyTraceBack_Check(tb)) { + PyErr_SetString(PyExc_TypeError, + "raise: arg 3 must be a traceback or None"); + goto bad; + } + if (value == Py_None) + value = 0; + + if (PyExceptionInstance_Check(type)) { + if (value) { + PyErr_SetString(PyExc_TypeError, + "instance exception may not have a separate value"); + goto bad; + } + value = type; + type = (PyObject*) Py_TYPE(value); + } else if (!PyExceptionClass_Check(type)) { + PyErr_SetString(PyExc_TypeError, + "raise: exception class must be a subclass of BaseException"); + goto bad; + } + + PyErr_SetObject(type, value); + + if (tb) { + PyThreadState *tstate = PyThreadState_GET(); + PyObject* tmp_tb = tstate->curexc_traceback; + if (tb != tmp_tb) { + Py_INCREF(tb); + tstate->curexc_traceback = tb; + Py_XDECREF(tmp_tb); + } + } + +bad: + return; +} +#endif + +static CYTHON_INLINE int32_t __Pyx_PyInt_from_py_int32_t(PyObject* x) { + const int32_t neg_one = (int32_t)-1, const_zero = (int32_t)0; + const int is_unsigned = const_zero < neg_one; + if (sizeof(int32_t) == sizeof(char)) { + if (is_unsigned) + return (int32_t)__Pyx_PyInt_AsUnsignedChar(x); + else + return (int32_t)__Pyx_PyInt_AsSignedChar(x); + } else if (sizeof(int32_t) == sizeof(short)) { + if (is_unsigned) + return (int32_t)__Pyx_PyInt_AsUnsignedShort(x); + else + return (int32_t)__Pyx_PyInt_AsSignedShort(x); + } else if (sizeof(int32_t) == sizeof(int)) { + if (is_unsigned) + return (int32_t)__Pyx_PyInt_AsUnsignedInt(x); + else + return (int32_t)__Pyx_PyInt_AsSignedInt(x); + } else if (sizeof(int32_t) == sizeof(long)) { + if (is_unsigned) + return (int32_t)__Pyx_PyInt_AsUnsignedLong(x); + else + return (int32_t)__Pyx_PyInt_AsSignedLong(x); + } else if (sizeof(int32_t) == sizeof(PY_LONG_LONG)) { + if (is_unsigned) + return (int32_t)__Pyx_PyInt_AsUnsignedLongLong(x); + else + return (int32_t)__Pyx_PyInt_AsSignedLongLong(x); + } else { + int32_t val; + PyObject *v = __Pyx_PyNumber_Int(x); + #if PY_VERSION_HEX < 0x03000000 + if (likely(v) && !PyLong_Check(v)) { + PyObject *tmp = v; + v = PyNumber_Long(tmp); + Py_DECREF(tmp); + } + #endif + if (likely(v)) { + int one = 1; int is_little = (int)*(unsigned char *)&one; + unsigned char *bytes = (unsigned char *)&val; + int ret = _PyLong_AsByteArray((PyLongObject *)v, + bytes, sizeof(val), + is_little, !is_unsigned); + Py_DECREF(v); + if (likely(!ret)) + return val; + } + return (int32_t)-1; + } +} + +static CYTHON_INLINE unsigned char __Pyx_PyInt_AsUnsignedChar(PyObject* x) { + const unsigned char neg_one = (unsigned char)-1, const_zero = 0; + const int is_unsigned = neg_one > const_zero; + if (sizeof(unsigned char) < sizeof(long)) { + long val = __Pyx_PyInt_AsLong(x); + if (unlikely(val != (long)(unsigned char)val)) { + if (!unlikely(val == -1 && PyErr_Occurred())) { + PyErr_SetString(PyExc_OverflowError, + (is_unsigned && unlikely(val < 0)) ? + "can't convert negative value to unsigned char" : + "value too large to convert to unsigned char"); + } + return (unsigned char)-1; + } + return (unsigned char)val; + } + return (unsigned char)__Pyx_PyInt_AsUnsignedLong(x); +} + +static CYTHON_INLINE unsigned short __Pyx_PyInt_AsUnsignedShort(PyObject* x) { + const unsigned short neg_one = (unsigned short)-1, const_zero = 0; + const int is_unsigned = neg_one > const_zero; + if (sizeof(unsigned short) < sizeof(long)) { + long val = __Pyx_PyInt_AsLong(x); + if (unlikely(val != (long)(unsigned short)val)) { + if (!unlikely(val == -1 && PyErr_Occurred())) { + PyErr_SetString(PyExc_OverflowError, + (is_unsigned && unlikely(val < 0)) ? + "can't convert negative value to unsigned short" : + "value too large to convert to unsigned short"); + } + return (unsigned short)-1; + } + return (unsigned short)val; + } + return (unsigned short)__Pyx_PyInt_AsUnsignedLong(x); +} + +static CYTHON_INLINE unsigned int __Pyx_PyInt_AsUnsignedInt(PyObject* x) { + const unsigned int neg_one = (unsigned int)-1, const_zero = 0; + const int is_unsigned = neg_one > const_zero; + if (sizeof(unsigned int) < sizeof(long)) { + long val = __Pyx_PyInt_AsLong(x); + if (unlikely(val != (long)(unsigned int)val)) { + if (!unlikely(val == -1 && PyErr_Occurred())) { + PyErr_SetString(PyExc_OverflowError, + (is_unsigned && unlikely(val < 0)) ? + "can't convert negative value to unsigned int" : + "value too large to convert to unsigned int"); + } + return (unsigned int)-1; + } + return (unsigned int)val; + } + return (unsigned int)__Pyx_PyInt_AsUnsignedLong(x); +} + +static CYTHON_INLINE char __Pyx_PyInt_AsChar(PyObject* x) { + const char neg_one = (char)-1, const_zero = 0; + const int is_unsigned = neg_one > const_zero; + if (sizeof(char) < sizeof(long)) { + long val = __Pyx_PyInt_AsLong(x); + if (unlikely(val != (long)(char)val)) { + if (!unlikely(val == -1 && PyErr_Occurred())) { + PyErr_SetString(PyExc_OverflowError, + (is_unsigned && unlikely(val < 0)) ? + "can't convert negative value to char" : + "value too large to convert to char"); + } + return (char)-1; + } + return (char)val; + } + return (char)__Pyx_PyInt_AsLong(x); +} + +static CYTHON_INLINE short __Pyx_PyInt_AsShort(PyObject* x) { + const short neg_one = (short)-1, const_zero = 0; + const int is_unsigned = neg_one > const_zero; + if (sizeof(short) < sizeof(long)) { + long val = __Pyx_PyInt_AsLong(x); + if (unlikely(val != (long)(short)val)) { + if (!unlikely(val == -1 && PyErr_Occurred())) { + PyErr_SetString(PyExc_OverflowError, + (is_unsigned && unlikely(val < 0)) ? + "can't convert negative value to short" : + "value too large to convert to short"); + } + return (short)-1; + } + return (short)val; + } + return (short)__Pyx_PyInt_AsLong(x); +} + +static CYTHON_INLINE int __Pyx_PyInt_AsInt(PyObject* x) { + const int neg_one = (int)-1, const_zero = 0; + const int is_unsigned = neg_one > const_zero; + if (sizeof(int) < sizeof(long)) { + long val = __Pyx_PyInt_AsLong(x); + if (unlikely(val != (long)(int)val)) { + if (!unlikely(val == -1 && PyErr_Occurred())) { + PyErr_SetString(PyExc_OverflowError, + (is_unsigned && unlikely(val < 0)) ? + "can't convert negative value to int" : + "value too large to convert to int"); + } + return (int)-1; + } + return (int)val; + } + return (int)__Pyx_PyInt_AsLong(x); +} + +static CYTHON_INLINE signed char __Pyx_PyInt_AsSignedChar(PyObject* x) { + const signed char neg_one = (signed char)-1, const_zero = 0; + const int is_unsigned = neg_one > const_zero; + if (sizeof(signed char) < sizeof(long)) { + long val = __Pyx_PyInt_AsLong(x); + if (unlikely(val != (long)(signed char)val)) { + if (!unlikely(val == -1 && PyErr_Occurred())) { + PyErr_SetString(PyExc_OverflowError, + (is_unsigned && unlikely(val < 0)) ? + "can't convert negative value to signed char" : + "value too large to convert to signed char"); + } + return (signed char)-1; + } + return (signed char)val; + } + return (signed char)__Pyx_PyInt_AsSignedLong(x); +} + +static CYTHON_INLINE signed short __Pyx_PyInt_AsSignedShort(PyObject* x) { + const signed short neg_one = (signed short)-1, const_zero = 0; + const int is_unsigned = neg_one > const_zero; + if (sizeof(signed short) < sizeof(long)) { + long val = __Pyx_PyInt_AsLong(x); + if (unlikely(val != (long)(signed short)val)) { + if (!unlikely(val == -1 && PyErr_Occurred())) { + PyErr_SetString(PyExc_OverflowError, + (is_unsigned && unlikely(val < 0)) ? + "can't convert negative value to signed short" : + "value too large to convert to signed short"); + } + return (signed short)-1; + } + return (signed short)val; + } + return (signed short)__Pyx_PyInt_AsSignedLong(x); +} + +static CYTHON_INLINE signed int __Pyx_PyInt_AsSignedInt(PyObject* x) { + const signed int neg_one = (signed int)-1, const_zero = 0; + const int is_unsigned = neg_one > const_zero; + if (sizeof(signed int) < sizeof(long)) { + long val = __Pyx_PyInt_AsLong(x); + if (unlikely(val != (long)(signed int)val)) { + if (!unlikely(val == -1 && PyErr_Occurred())) { + PyErr_SetString(PyExc_OverflowError, + (is_unsigned && unlikely(val < 0)) ? + "can't convert negative value to signed int" : + "value too large to convert to signed int"); + } + return (signed int)-1; + } + return (signed int)val; + } + return (signed int)__Pyx_PyInt_AsSignedLong(x); +} + +static CYTHON_INLINE int __Pyx_PyInt_AsLongDouble(PyObject* x) { + const int neg_one = (int)-1, const_zero = 0; + const int is_unsigned = neg_one > const_zero; + if (sizeof(int) < sizeof(long)) { + long val = __Pyx_PyInt_AsLong(x); + if (unlikely(val != (long)(int)val)) { + if (!unlikely(val == -1 && PyErr_Occurred())) { + PyErr_SetString(PyExc_OverflowError, + (is_unsigned && unlikely(val < 0)) ? + "can't convert negative value to int" : + "value too large to convert to int"); + } + return (int)-1; + } + return (int)val; + } + return (int)__Pyx_PyInt_AsLong(x); +} + +static CYTHON_INLINE unsigned long __Pyx_PyInt_AsUnsignedLong(PyObject* x) { + const unsigned long neg_one = (unsigned long)-1, const_zero = 0; + const int is_unsigned = neg_one > const_zero; +#if PY_VERSION_HEX < 0x03000000 + if (likely(PyInt_Check(x))) { + long val = PyInt_AS_LONG(x); + if (is_unsigned && unlikely(val < 0)) { + PyErr_SetString(PyExc_OverflowError, + "can't convert negative value to unsigned long"); + return (unsigned long)-1; + } + return (unsigned long)val; + } else +#endif + if (likely(PyLong_Check(x))) { + if (is_unsigned) { + if (unlikely(Py_SIZE(x) < 0)) { + PyErr_SetString(PyExc_OverflowError, + "can't convert negative value to unsigned long"); + return (unsigned long)-1; + } + return PyLong_AsUnsignedLong(x); + } else { + return PyLong_AsLong(x); + } + } else { + unsigned long val; + PyObject *tmp = __Pyx_PyNumber_Int(x); + if (!tmp) return (unsigned long)-1; + val = __Pyx_PyInt_AsUnsignedLong(tmp); + Py_DECREF(tmp); + return val; + } +} + +static CYTHON_INLINE unsigned PY_LONG_LONG __Pyx_PyInt_AsUnsignedLongLong(PyObject* x) { + const unsigned PY_LONG_LONG neg_one = (unsigned PY_LONG_LONG)-1, const_zero = 0; + const int is_unsigned = neg_one > const_zero; +#if PY_VERSION_HEX < 0x03000000 + if (likely(PyInt_Check(x))) { + long val = PyInt_AS_LONG(x); + if (is_unsigned && unlikely(val < 0)) { + PyErr_SetString(PyExc_OverflowError, + "can't convert negative value to unsigned PY_LONG_LONG"); + return (unsigned PY_LONG_LONG)-1; + } + return (unsigned PY_LONG_LONG)val; + } else +#endif + if (likely(PyLong_Check(x))) { + if (is_unsigned) { + if (unlikely(Py_SIZE(x) < 0)) { + PyErr_SetString(PyExc_OverflowError, + "can't convert negative value to unsigned PY_LONG_LONG"); + return (unsigned PY_LONG_LONG)-1; + } + return PyLong_AsUnsignedLongLong(x); + } else { + return PyLong_AsLongLong(x); + } + } else { + unsigned PY_LONG_LONG val; + PyObject *tmp = __Pyx_PyNumber_Int(x); + if (!tmp) return (unsigned PY_LONG_LONG)-1; + val = __Pyx_PyInt_AsUnsignedLongLong(tmp); + Py_DECREF(tmp); + return val; + } +} + +static CYTHON_INLINE long __Pyx_PyInt_AsLong(PyObject* x) { + const long neg_one = (long)-1, const_zero = 0; + const int is_unsigned = neg_one > const_zero; +#if PY_VERSION_HEX < 0x03000000 + if (likely(PyInt_Check(x))) { + long val = PyInt_AS_LONG(x); + if (is_unsigned && unlikely(val < 0)) { + PyErr_SetString(PyExc_OverflowError, + "can't convert negative value to long"); + return (long)-1; + } + return (long)val; + } else +#endif + if (likely(PyLong_Check(x))) { + if (is_unsigned) { + if (unlikely(Py_SIZE(x) < 0)) { + PyErr_SetString(PyExc_OverflowError, + "can't convert negative value to long"); + return (long)-1; + } + return PyLong_AsUnsignedLong(x); + } else { + return PyLong_AsLong(x); + } + } else { + long val; + PyObject *tmp = __Pyx_PyNumber_Int(x); + if (!tmp) return (long)-1; + val = __Pyx_PyInt_AsLong(tmp); + Py_DECREF(tmp); + return val; + } +} + +static CYTHON_INLINE PY_LONG_LONG __Pyx_PyInt_AsLongLong(PyObject* x) { + const PY_LONG_LONG neg_one = (PY_LONG_LONG)-1, const_zero = 0; + const int is_unsigned = neg_one > const_zero; +#if PY_VERSION_HEX < 0x03000000 + if (likely(PyInt_Check(x))) { + long val = PyInt_AS_LONG(x); + if (is_unsigned && unlikely(val < 0)) { + PyErr_SetString(PyExc_OverflowError, + "can't convert negative value to PY_LONG_LONG"); + return (PY_LONG_LONG)-1; + } + return (PY_LONG_LONG)val; + } else +#endif + if (likely(PyLong_Check(x))) { + if (is_unsigned) { + if (unlikely(Py_SIZE(x) < 0)) { + PyErr_SetString(PyExc_OverflowError, + "can't convert negative value to PY_LONG_LONG"); + return (PY_LONG_LONG)-1; + } + return PyLong_AsUnsignedLongLong(x); + } else { + return PyLong_AsLongLong(x); + } + } else { + PY_LONG_LONG val; + PyObject *tmp = __Pyx_PyNumber_Int(x); + if (!tmp) return (PY_LONG_LONG)-1; + val = __Pyx_PyInt_AsLongLong(tmp); + Py_DECREF(tmp); + return val; + } +} + +static CYTHON_INLINE signed long __Pyx_PyInt_AsSignedLong(PyObject* x) { + const signed long neg_one = (signed long)-1, const_zero = 0; + const int is_unsigned = neg_one > const_zero; +#if PY_VERSION_HEX < 0x03000000 + if (likely(PyInt_Check(x))) { + long val = PyInt_AS_LONG(x); + if (is_unsigned && unlikely(val < 0)) { + PyErr_SetString(PyExc_OverflowError, + "can't convert negative value to signed long"); + return (signed long)-1; + } + return (signed long)val; + } else +#endif + if (likely(PyLong_Check(x))) { + if (is_unsigned) { + if (unlikely(Py_SIZE(x) < 0)) { + PyErr_SetString(PyExc_OverflowError, + "can't convert negative value to signed long"); + return (signed long)-1; + } + return PyLong_AsUnsignedLong(x); + } else { + return PyLong_AsLong(x); + } + } else { + signed long val; + PyObject *tmp = __Pyx_PyNumber_Int(x); + if (!tmp) return (signed long)-1; + val = __Pyx_PyInt_AsSignedLong(tmp); + Py_DECREF(tmp); + return val; + } +} + +static CYTHON_INLINE signed PY_LONG_LONG __Pyx_PyInt_AsSignedLongLong(PyObject* x) { + const signed PY_LONG_LONG neg_one = (signed PY_LONG_LONG)-1, const_zero = 0; + const int is_unsigned = neg_one > const_zero; +#if PY_VERSION_HEX < 0x03000000 + if (likely(PyInt_Check(x))) { + long val = PyInt_AS_LONG(x); + if (is_unsigned && unlikely(val < 0)) { + PyErr_SetString(PyExc_OverflowError, + "can't convert negative value to signed PY_LONG_LONG"); + return (signed PY_LONG_LONG)-1; + } + return (signed PY_LONG_LONG)val; + } else +#endif + if (likely(PyLong_Check(x))) { + if (is_unsigned) { + if (unlikely(Py_SIZE(x) < 0)) { + PyErr_SetString(PyExc_OverflowError, + "can't convert negative value to signed PY_LONG_LONG"); + return (signed PY_LONG_LONG)-1; + } + return PyLong_AsUnsignedLongLong(x); + } else { + return PyLong_AsLongLong(x); + } + } else { + signed PY_LONG_LONG val; + PyObject *tmp = __Pyx_PyNumber_Int(x); + if (!tmp) return (signed PY_LONG_LONG)-1; + val = __Pyx_PyInt_AsSignedLongLong(tmp); + Py_DECREF(tmp); + return val; + } +} + +#ifndef __PYX_HAVE_RT_ImportType +#define __PYX_HAVE_RT_ImportType +static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name, + long size, int strict) +{ + PyObject *py_module = 0; + PyObject *result = 0; + PyObject *py_name = 0; + char warning[200]; + + py_module = __Pyx_ImportModule(module_name); + if (!py_module) + goto bad; + #if PY_MAJOR_VERSION < 3 + py_name = PyString_FromString(class_name); + #else + py_name = PyUnicode_FromString(class_name); + #endif + if (!py_name) + goto bad; + result = PyObject_GetAttr(py_module, py_name); + Py_DECREF(py_name); + py_name = 0; + Py_DECREF(py_module); + py_module = 0; + if (!result) + goto bad; + if (!PyType_Check(result)) { + PyErr_Format(PyExc_TypeError, + "%s.%s is not a type object", + module_name, class_name); + goto bad; + } + if (!strict && ((PyTypeObject *)result)->tp_basicsize > size) { + PyOS_snprintf(warning, sizeof(warning), + "%s.%s size changed, may indicate binary incompatibility", + module_name, class_name); + #if PY_VERSION_HEX < 0x02050000 + PyErr_Warn(NULL, warning); + #else + PyErr_WarnEx(NULL, warning, 0); + #endif + } + else if (((PyTypeObject *)result)->tp_basicsize != size) { + PyErr_Format(PyExc_ValueError, + "%s.%s has the wrong size, try recompiling", + module_name, class_name); + goto bad; + } + return (PyTypeObject *)result; +bad: + Py_XDECREF(py_module); + Py_XDECREF(result); + return 0; +} +#endif + +#ifndef __PYX_HAVE_RT_ImportModule +#define __PYX_HAVE_RT_ImportModule +static PyObject *__Pyx_ImportModule(const char *name) { + PyObject *py_name = 0; + PyObject *py_module = 0; + + #if PY_MAJOR_VERSION < 3 + py_name = PyString_FromString(name); + #else + py_name = PyUnicode_FromString(name); + #endif + if (!py_name) + goto bad; + py_module = PyImport_Import(py_name); + Py_DECREF(py_name); + return py_module; +bad: + Py_XDECREF(py_name); + return 0; +} +#endif + +static int __Pyx_GetVtable(PyObject *dict, void *vtabptr) { + PyObject *ob = PyMapping_GetItemString(dict, (char *)"__pyx_vtable__"); + if (!ob) + goto bad; +#if PY_VERSION_HEX >= 0x02070000 && !(PY_MAJOR_VERSION==3&&PY_MINOR_VERSION==0) + *(void **)vtabptr = PyCapsule_GetPointer(ob, 0); +#else + *(void **)vtabptr = PyCObject_AsVoidPtr(ob); +#endif + if (!*(void **)vtabptr) + goto bad; + Py_DECREF(ob); + return 0; +bad: + Py_XDECREF(ob); + return -1; +} + +#include "compile.h" +#include "frameobject.h" +#include "traceback.h" + +static void __Pyx_AddTraceback(const char *funcname) { + PyObject *py_srcfile = 0; + PyObject *py_funcname = 0; + PyObject *py_globals = 0; + PyCodeObject *py_code = 0; + PyFrameObject *py_frame = 0; + + #if PY_MAJOR_VERSION < 3 + py_srcfile = PyString_FromString(__pyx_filename); + #else + py_srcfile = PyUnicode_FromString(__pyx_filename); + #endif + if (!py_srcfile) goto bad; + if (__pyx_clineno) { + #if PY_MAJOR_VERSION < 3 + py_funcname = PyString_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, __pyx_clineno); + #else + py_funcname = PyUnicode_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, __pyx_clineno); + #endif + } + else { + #if PY_MAJOR_VERSION < 3 + py_funcname = PyString_FromString(funcname); + #else + py_funcname = PyUnicode_FromString(funcname); + #endif + } + if (!py_funcname) goto bad; + py_globals = PyModule_GetDict(__pyx_m); + if (!py_globals) goto bad; + py_code = PyCode_New( + 0, /*int argcount,*/ + #if PY_MAJOR_VERSION >= 3 + 0, /*int kwonlyargcount,*/ + #endif + 0, /*int nlocals,*/ + 0, /*int stacksize,*/ + 0, /*int flags,*/ + __pyx_empty_bytes, /*PyObject *code,*/ + __pyx_empty_tuple, /*PyObject *consts,*/ + __pyx_empty_tuple, /*PyObject *names,*/ + __pyx_empty_tuple, /*PyObject *varnames,*/ + __pyx_empty_tuple, /*PyObject *freevars,*/ + __pyx_empty_tuple, /*PyObject *cellvars,*/ + py_srcfile, /*PyObject *filename,*/ + py_funcname, /*PyObject *name,*/ + __pyx_lineno, /*int firstlineno,*/ + __pyx_empty_bytes /*PyObject *lnotab*/ + ); + if (!py_code) goto bad; + py_frame = PyFrame_New( + PyThreadState_GET(), /*PyThreadState *tstate,*/ + py_code, /*PyCodeObject *code,*/ + py_globals, /*PyObject *globals,*/ + 0 /*PyObject *locals*/ + ); + if (!py_frame) goto bad; + py_frame->f_lineno = __pyx_lineno; + PyTraceBack_Here(py_frame); +bad: + Py_XDECREF(py_srcfile); + Py_XDECREF(py_funcname); + Py_XDECREF(py_code); + Py_XDECREF(py_frame); +} + +static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) { + while (t->p) { + #if PY_MAJOR_VERSION < 3 + if (t->is_unicode) { + *t->p = PyUnicode_DecodeUTF8(t->s, t->n - 1, NULL); + } else if (t->intern) { + *t->p = PyString_InternFromString(t->s); + } else { + *t->p = PyString_FromStringAndSize(t->s, t->n - 1); + } + #else /* Python 3+ has unicode identifiers */ + if (t->is_unicode | t->is_str) { + if (t->intern) { + *t->p = PyUnicode_InternFromString(t->s); + } else if (t->encoding) { + *t->p = PyUnicode_Decode(t->s, t->n - 1, t->encoding, NULL); + } else { + *t->p = PyUnicode_FromStringAndSize(t->s, t->n - 1); + } + } else { + *t->p = PyBytes_FromStringAndSize(t->s, t->n - 1); + } + #endif + if (!*t->p) + return -1; + ++t; + } + return 0; +} + +/* Type Conversion Functions */ + +static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject* x) { + int is_true = x == Py_True; + if (is_true | (x == Py_False) | (x == Py_None)) return is_true; + else return PyObject_IsTrue(x); +} + +static CYTHON_INLINE PyObject* __Pyx_PyNumber_Int(PyObject* x) { + PyNumberMethods *m; + const char *name = NULL; + PyObject *res = NULL; +#if PY_VERSION_HEX < 0x03000000 + if (PyInt_Check(x) || PyLong_Check(x)) +#else + if (PyLong_Check(x)) +#endif + return Py_INCREF(x), x; + m = Py_TYPE(x)->tp_as_number; +#if PY_VERSION_HEX < 0x03000000 + if (m && m->nb_int) { + name = "int"; + res = PyNumber_Int(x); + } + else if (m && m->nb_long) { + name = "long"; + res = PyNumber_Long(x); + } +#else + if (m && m->nb_int) { + name = "int"; + res = PyNumber_Long(x); + } +#endif + if (res) { +#if PY_VERSION_HEX < 0x03000000 + if (!PyInt_Check(res) && !PyLong_Check(res)) { +#else + if (!PyLong_Check(res)) { +#endif + PyErr_Format(PyExc_TypeError, + "__%s__ returned non-%s (type %.200s)", + name, name, Py_TYPE(res)->tp_name); + Py_DECREF(res); + return NULL; + } + } + else if (!PyErr_Occurred()) { + PyErr_SetString(PyExc_TypeError, + "an integer is required"); + } + return res; +} + +static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) { + Py_ssize_t ival; + PyObject* x = PyNumber_Index(b); + if (!x) return -1; + ival = PyInt_AsSsize_t(x); + Py_DECREF(x); + return ival; +} + +static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) { +#if PY_VERSION_HEX < 0x02050000 + if (ival <= LONG_MAX) + return PyInt_FromLong((long)ival); + else { + unsigned char *bytes = (unsigned char *) &ival; + int one = 1; int little = (int)*(unsigned char*)&one; + return _PyLong_FromByteArray(bytes, sizeof(size_t), little, 0); + } +#else + return PyInt_FromSize_t(ival); +#endif +} + +static CYTHON_INLINE size_t __Pyx_PyInt_AsSize_t(PyObject* x) { + unsigned PY_LONG_LONG val = __Pyx_PyInt_AsUnsignedLongLong(x); + if (unlikely(val == (unsigned PY_LONG_LONG)-1 && PyErr_Occurred())) { + return (size_t)-1; + } else if (unlikely(val != (unsigned PY_LONG_LONG)(size_t)val)) { + PyErr_SetString(PyExc_OverflowError, + "value too large to convert to size_t"); + return (size_t)-1; + } + return (size_t)val; +} + + +#endif /* Py_PYTHON_H */