X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=pysam.git;a=blobdiff_plain;f=samtools%2Fbcftools%2Fbcf.h;h=822ae5cf80fd7f9dc375259524935c933f088323;hp=ba6dbe9b42ae033c6b3c179a730a48312cf927dd;hb=ca46ef4ba4a883c57cea62d5bf1bc021f1185109;hpb=d02fe5283ed7a93a2f76a5d6dc6e37b40c11b9b1

diff --git a/samtools/bcftools/bcf.h b/samtools/bcftools/bcf.h
index ba6dbe9..822ae5c 100644
--- a/samtools/bcftools/bcf.h
+++ b/samtools/bcftools/bcf.h
@@ -28,6 +28,8 @@
 #ifndef BCF_H
 #define BCF_H
 
+#define BCF_VERSION "0.1.17-dev (r973:277)"
+
 #include <stdint.h>
 #include <zlib.h>
 
@@ -150,6 +152,10 @@ extern "C" {
 	int bcf_fix_gt(bcf1_t *b);
 	// update PL generated by old samtools
 	int bcf_fix_pl(bcf1_t *b);
+	// convert PL to GLF-like 10-likelihood GL
+	int bcf_gl10(const bcf1_t *b, uint8_t *gl);
+	// convert up to 4 INDEL alleles to GLF-like 10-likelihood GL
+	int bcf_gl10_indel(const bcf1_t *b, uint8_t *gl);
 
 	// string hash table
 	void *bcf_build_refhash(bcf_hdr_t *h);