X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=pysam.git;a=blobdiff_plain;f=samtools%2Fbgzf.h;fp=samtools%2Fbgzf.h;h=7295f37425df320199aef87bb7bb80e482cc38bd;hp=099ae9a6da1785ae132be55932a2e5c930ba49cc;hb=d02fe5283ed7a93a2f76a5d6dc6e37b40c11b9b1;hpb=d828f9c9aa78e3d1687265b52de841f3f3852089

diff --git a/samtools/bgzf.h b/samtools/bgzf.h
index 099ae9a..7295f37 100644
--- a/samtools/bgzf.h
+++ b/samtools/bgzf.h
@@ -26,7 +26,6 @@
 
 #include <stdint.h>
 #include <stdio.h>
-#include <stdbool.h>
 #include <zlib.h>
 #ifdef _USE_KNETFILE
 #include "knetfile.h"
@@ -37,7 +36,7 @@
 typedef struct {
     int file_descriptor;
     char open_mode;  // 'r' or 'w'
-    bool owned_file, is_uncompressed;
+    int16_t owned_file, compress_level;
 #ifdef _USE_KNETFILE
 	union {
 		knetFile *fpr;
@@ -129,6 +128,7 @@ int bgzf_check_EOF(BGZF *fp);
 int bgzf_read_block(BGZF* fp);
 int bgzf_flush(BGZF* fp);
 int bgzf_flush_try(BGZF *fp, int size);
+int bgzf_check_bgzf(const char *fn);
 
 #ifdef __cplusplus
 }