X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=pysam.git;a=blobdiff_plain;f=samtools%2Ferrmod.h;fp=samtools%2Ferrmod.h;h=32c07b67b625924230689fca1d16da4f49e5938b;hp=0000000000000000000000000000000000000000;hb=bd0c3067c187d1f718004fb38acc093af8810a02;hpb=1b740fc70684c92a5e2293013217d5a2fd661d8a

diff --git a/samtools/errmod.h b/samtools/errmod.h
new file mode 100644
index 0000000..32c07b6
--- /dev/null
+++ b/samtools/errmod.h
@@ -0,0 +1,24 @@
+#ifndef ERRMOD_H
+#define ERRMOD_H
+
+#include <stdint.h>
+
+struct __errmod_coef_t;
+
+typedef struct {
+	double depcorr;
+	struct __errmod_coef_t *coef;
+} errmod_t;
+
+errmod_t *errmod_init(float depcorr);
+void errmod_destroy(errmod_t *em);
+
+/*
+	n: number of bases
+	m: maximum base
+	bases[i]: qual:6, strand:1, base:4
+	q[i*m+j]: phred-scaled likelihood of (i,j)
+ */
+int errmod_cal(const errmod_t *em, int n, int m, uint16_t *bases, float *q);
+
+#endif