X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=pysam.git;a=blobdiff_plain;f=tests%2FMakefile;fp=tests%2FMakefile;h=2b401e55d7e449c1e9b61129f7bc5894697d4707;hp=34828290149d9e484c5638230c3d241975dc5eb9;hb=68c074fc81858150ca7447a88e731eec96be6378;hpb=768881ffd9d33e3c5fa00dd9ea6f488f4f0700b3 diff --git a/tests/Makefile b/tests/Makefile index 3482829..2b401e5 100644 --- a/tests/Makefile +++ b/tests/Makefile @@ -8,7 +8,10 @@ all: ex1.pileup.gz ex1.bam.bai \ ex8.bam ex8.bam.bai \ ex9_nofail.bam.bai \ ex9_fail.bam.bai \ - ex10.bam ex10.bam.bai + ex10.bam ex10.bam.bai \ + example_unmapped_reads_no_sq.bam \ + example_user_header.bam \ + example_btag.bam ex2.sam.gz: ex1.bam ex1.bam.bai samtools view -h ex1.bam | gzip > ex2.sam.gz @@ -28,6 +31,11 @@ ex1.bam:ex1.sam.gz ex1.fa.fai ex1.pileup.gz:ex1.bam ex1.fa samtools pileup -cf ex1.fa ex1.bam | gzip > ex1.pileup.gz +example_unmapped_reads_no_sq.bam: example_unmapped_reads_no_sq.sam + touch tmp.list + samtools import tmp.list $< $@ + rm -f tmp.list + clean: rm -fr *.bam *.bai *.fai *.pileup* \ *~ calDepth *.dSYM pysam_*.sam \