X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=pysam.git;a=blobdiff_plain;f=tests%2Fvcf-examples%2F20.vcf;fp=tests%2Fvcf-examples%2F20.vcf;h=e14beb5ec95aee747bced6dcb782cf52a09767f5;hp=0000000000000000000000000000000000000000;hb=68c074fc81858150ca7447a88e731eec96be6378;hpb=768881ffd9d33e3c5fa00dd9ea6f488f4f0700b3

diff --git a/tests/vcf-examples/20.vcf b/tests/vcf-examples/20.vcf
new file mode 100644
index 0000000..e14beb5
--- /dev/null
+++ b/tests/vcf-examples/20.vcf
@@ -0,0 +1,307 @@
+##fileformat=VCFv4.1
+##INFO=<ID=PacBio,Number=1,Type=String,Description="Status of PacBio for this site">
+##INFO=<ID=Sqnm,Number=1,Type=String,Description="Status of Sequenom for this site">
+##INFO=<ID=Sanger,Number=1,Type=String,Description="Status of Sanger Sequencing for this site">
+##INFO=<ID=NotCalledInValidationSamples,Number=.,Type=Flag,Description="Was not called polymorphic in sequencing for any of the passing validation samples; could still be polymorphic">
+##reference=file:///humgen/1kg/reference/human_g1k_v37.fasta
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	
+20	207414	.	G	A	.	.	PacBio=NoCall;Sqnm=NoCall
+20	792106	.	C	G	.	.	PacBio=Poly;Sqnm=NoCall
+20	894031	.	G	A	.	.	PacBio=Poly;Sqnm=Poly
+20	1508892	.	A	G	.	.	PacBio=Poly;Sqnm=Poly
+20	1686745	.	G	A	.	.	PacBio=Poly;Sqnm=NoCall
+20	1818886	.	C	T	.	.	PacBio=Poly;Sqnm=Poly
+20	2062981	.	A	G	.	.	PacBio=Poly;Sqnm=Poly
+20	2773229	.	A	G	.	.	PacBio=Poly;Sqnm=Poly
+20	2817761	.	T	C	.	.	PacBio=Poly;Sqnm=Poly
+20	2994966	.	G	T	.	.	PacBio=Poly;Sqnm=Poly
+20	3126723	.	C	T	.	.	PacBio=Poly;Sqnm=Poly
+20	3523369	.	G	A	.	.	PacBio=Poly;Sqnm=Poly
+20	3635082	.	A	G	.	.	PacBio=Poly;Sqnm=Poly
+20	3714080	.	C	G	.	.	PacBio=Poly;Sqnm=Poly
+20	3905791	.	G	A	.	.	PacBio=Poly;Sqnm=NoCall
+20	3907250	.	A	G	.	.	PacBio=Poly;Sqnm=Poly
+20	4171994	.	C	T	.	.	PacBio=Poly;Sqnm=Poly
+20	4246375	.	T	C	.	.	PacBio=Poly;Sqnm=NoCall
+20	4375206	.	C	T	.	.	PacBio=Poly;Sqnm=Poly
+20	4434727	.	A	T	.	.	PacBio=NoCall;Sqnm=Mono;Sanger=Mono
+20	4495199	.	G	C	.	.	PacBio=Poly;Sqnm=Poly
+20	4835415	.	C	T	.	.	PacBio=Poly;Sqnm=Poly
+20	4915769	.	T	C	.	.	PacBio=Poly;Sqnm=NoCall
+20	4983198	.	T	C	.	.	PacBio=Poly;Sqnm=Poly
+20	5441171	.	C	T	.	.	PacBio=Poly;Sqnm=NoCall
+20	5978029	.	T	C	.	.	PacBio=Poly;Sqnm=Poly
+20	6061317	.	C	A	.	.	PacBio=Poly;Sqnm=Poly
+20	6328925	.	C	A	.	.	PacBio=Poly;Sqnm=Poly
+20	6675461	.	C	T	.	.	PacBio=Poly;Sqnm=NoCall
+20	6976115	.	C	T	.	.	PacBio=Poly;Sqnm=Poly
+20	7013349	.	G	A	.	.	PacBio=NoCall;Sqnm=NoCall
+20	7039302	.	C	T	.	.	PacBio=Poly;Sqnm=Poly
+20	7638704	.	C	A	.	.	PacBio=Poly;Sqnm=Poly
+20	7688381	.	G	A	.	.	PacBio=Poly;Sqnm=Poly
+20	7726350	.	G	T	.	.	PacBio=Poly;Sqnm=Poly
+20	7733957	.	C	T	.	.	PacBio=Poly;Sqnm=Poly
+20	7850516	.	T	C	.	.	PacBio=Poly;Sqnm=Poly
+20	8095059	.	G	A	.	.	PacBio=NoCall;Sqnm=NoCall
+20	8232012	.	T	A	.	.	PacBio=Poly;Sqnm=Poly
+20	8415290	.	A	C	.	.	PacBio=Poly;Sqnm=Poly
+20	8438535	.	T	C	.	.	PacBio=Poly;Sqnm=NoCall
+20	8815233	.	G	A	.	.	PacBio=Mono;Sqnm=NoCall
+20	8953629	.	C	G	.	.	PacBio=Poly;Sqnm=Poly
+20	9237267	.	T	A	.	.	PacBio=Poly;Sqnm=Poly
+20	9744549	.	T	C	.	.	PacBio=Poly;Sqnm=Poly
+20	9780416	.	C	A	.	.	PacBio=Poly;Sqnm=Poly
+20	10252552	.	T	C	.	.	PacBio=Poly;Sqnm=Poly
+20	10314038	.	C	G	.	.	PacBio=Poly;Sqnm=Poly
+20	10757416	.	T	C	.	.	PacBio=Poly;Sqnm=Poly
+20	11087688	.	A	G	.	.	PacBio=Poly;Sqnm=Poly
+20	11094107	.	G	A	.	.	PacBio=NoCall;Sqnm=NoCall
+20	11098680	.	G	A	.	.	PacBio=Poly;Sqnm=Poly
+20	11353163	.	G	C	.	.	PacBio=Poly;Sqnm=Poly
+20	11510559	.	A	G	.	.	PacBio=Poly;Sqnm=Poly
+20	11787224	.	C	T	.	.	PacBio=Poly;Sqnm=Poly
+20	11821024	.	T	C	.	.	PacBio=Poly;Sqnm=Poly
+20	11932295	.	A	G	.	.	PacBio=Poly;Sqnm=Poly
+20	11965311	.	G	T	.	.	PacBio=Poly;Sqnm=Poly
+20	12023599	.	C	T	.	.	PacBio=Poly;Sqnm=Poly
+20	12505523	.	G	T	.	.	PacBio=Poly;Sqnm=Poly
+20	12570054	.	A	C	.	.	PacBio=NoCall;Sqnm=Poly
+20	12667452	.	A	G	.	.	PacBio=Poly;Sqnm=Poly
+20	12678271	.	G	A	.	.	PacBio=Poly;Sqnm=Mono
+20	12704885	.	T	C	.	.	PacBio=Poly;Sqnm=Poly
+20	12733996	.	C	T	.	.	PacBio=Poly;Sqnm=NoCall
+20	12737269	.	C	T	.	.	PacBio=NoCall;Sqnm=NoCall
+20	12788981	.	G	A	.	.	PacBio=Poly;Sqnm=Poly
+20	12828594	.	T	C	.	.	PacBio=Poly;Sqnm=Poly
+20	12999157	.	T	C	.	.	PacBio=Poly;Sqnm=Poly
+20	13083804	.	C	G	.	.	PacBio=Poly;Sqnm=Poly
+20	13197077	.	G	T	.	.	PacBio=Poly;Sqnm=NoCall
+20	13217896	.	A	G	.	.	PacBio=NoCall;Sqnm=Poly
+20	13276778	.	G	A	.	.	PacBio=Poly;Sqnm=Poly
+20	13375116	.	G	A	.	.	PacBio=Mono;Sqnm=NoCall;NotCalledInValidationSamples
+20	13648056	.	T	C	.	.	PacBio=Poly;Sqnm=Poly
+20	13672895	.	C	T	.	.	PacBio=Poly;Sqnm=Poly
+20	14160159	.	C	G	.	.	PacBio=Poly;Sqnm=Poly
+20	14266815	.	T	A	.	.	PacBio=Poly;Sqnm=Poly
+20	14865143	.	C	T	.	.	PacBio=Poly;Sqnm=Poly
+20	14882868	.	T	G	.	.	PacBio=Poly;Sqnm=Poly
+20	15244725	.	C	A	.	.	PacBio=Poly;Sqnm=Poly
+20	15277072	.	G	A	.	.	PacBio=Poly;Sqnm=Poly
+20	15390867	.	C	T	.	.	PacBio=Poly;Sqnm=Poly
+20	15785205	.	T	C	.	.	PacBio=Poly;Sqnm=Poly
+20	15833020	.	A	G	.	.	PacBio=Poly;Sqnm=Poly
+20	15847620	.	C	T	.	.	PacBio=Poly;Sqnm=Poly
+20	15953253	.	G	A	.	.	PacBio=Poly;Sqnm=NoCall
+20	15964434	.	G	C	.	.	PacBio=NoCall;Sqnm=NoCall
+20	16183922	.	G	A	.	.	PacBio=Poly;Sqnm=Poly
+20	16190824	.	A	G	.	.	PacBio=Poly;Sqnm=Poly
+20	16557779	.	A	G	.	.	PacBio=Poly;Sqnm=Poly
+20	16730061	.	C	T	.	.	PacBio=Poly;Sqnm=Poly
+20	16794015	.	T	C	.	.	PacBio=Poly;Sqnm=Poly
+20	17048741	.	G	A	.	.	PacBio=Poly;Sqnm=Poly
+20	17299827	.	G	A	.	.	PacBio=Poly;Sqnm=Poly
+20	17299845	.	C	T	.	.	PacBio=Poly;Sqnm=Poly
+20	17390323	.	G	A	.	.	PacBio=Poly;Sqnm=Poly
+20	17624973	.	C	G	.	.	PacBio=Poly;Sqnm=Poly
+20	17666040	.	G	A	.	.	PacBio=Poly;Sqnm=Poly
+20	17735813	.	T	C	.	.	PacBio=Poly;Sqnm=Poly
+20	17794990	.	A	G	.	.	PacBio=Mono;Sqnm=Mono;NotCalledInValidationSamples
+20	17809418	.	G	A	.	.	PacBio=Poly;Sqnm=Poly
+20	17860794	.	C	T	.	.	PacBio=Mono;Sqnm=NoCall
+20	17881936	.	A	G	.	.	PacBio=Poly;Sqnm=Poly
+20	17893097	.	C	G	.	.	PacBio=NoCall;Sqnm=NoCall
+20	18188883	.	A	G	.	.	PacBio=Poly;Sqnm=Poly
+20	18199319	.	G	A	.	.	PacBio=Poly;Sqnm=Poly
+20	18233699	.	C	T	.	.	PacBio=Poly;Sqnm=Poly
+20	18536869	.	G	A	.	.	PacBio=Poly;Sqnm=Poly
+20	18637785	.	T	C	.	.	PacBio=NoCall;Sqnm=Mono;Sanger=Mono;NotCalledInValidationSamples
+20	18763166	.	G	A	.	.	PacBio=Poly;Sqnm=Poly
+20	19102715	.	A	G	.	.	PacBio=NoCall;Sqnm=NoCall
+20	19244609	.	C	T	.	.	PacBio=Poly;Sqnm=Poly
+20	19573719	.	C	T	.	.	PacBio=Poly;Sqnm=Poly
+20	19815613	.	A	G	.	.	PacBio=NoCall;Sqnm=Poly
+20	20511479	.	C	T	.	.	PacBio=Poly;Sqnm=Poly;Sanger=Poly
+20	20639358	.	T	C	.	.	PacBio=Poly;Sqnm=Poly
+20	21278490	.	T	C	.	.	PacBio=Poly;Sqnm=Poly
+20	21297718	.	C	G	.	.	PacBio=Poly;Sqnm=Poly
+20	21418269	.	A	T	.	.	PacBio=Poly;Sqnm=Poly
+20	21560553	.	A	T	.	.	PacBio=Poly;Sqnm=Poly
+20	21618451	.	G	A	.	.	PacBio=NoCall;Sqnm=NoCall
+20	21705723	.	C	A	.	.	PacBio=Poly;Sqnm=Poly
+20	22076189	.	A	G	.	.	PacBio=Poly;Sqnm=Poly
+20	22118677	.	T	A	.	.	PacBio=Poly;Sqnm=Poly
+20	22320721	.	C	T	.	.	PacBio=Poly;Sqnm=Poly
+20	22368918	.	C	A	.	.	PacBio=Poly;Sqnm=Poly
+20	23020003	.	A	G	.	.	PacBio=Poly;Sqnm=Poly
+20	23214163	.	G	A	.	.	PacBio=Poly;Sqnm=Poly
+20	23273877	.	T	C	.	.	PacBio=Poly;Sqnm=Poly
+20	23335790	.	C	T	.	.	PacBio=Poly;Sqnm=NoCall
+20	23790659	.	C	T	.	.	PacBio=Poly;Sqnm=Poly
+20	23830388	.	T	C	.	.	PacBio=Poly;Sqnm=NoCall
+20	23837678	.	C	G	.	.	PacBio=Poly;Sqnm=Poly
+20	23901081	.	A	C	.	.	PacBio=Poly;Sqnm=Poly
+20	23946361	.	C	T	.	.	PacBio=Poly;Sqnm=Poly
+20	23949242	.	A	G	.	.	PacBio=Poly;Sqnm=Poly
+20	24539119	.	A	G	.	.	PacBio=Poly;Sqnm=Poly
+20	24986457	.	C	T	.	.	PacBio=Poly;Sqnm=Poly
+20	25183729	.	G	A	.	.	PacBio=NoCall;Sqnm=NoCall
+20	25277133	.	C	T	.	.	PacBio=Poly;Sqnm=Poly
+20	25292464	.	C	T	.	.	PacBio=Poly;Sqnm=NoCall
+20	25528915	.	G	C	.	.	PacBio=Poly;Sqnm=Poly
+20	25851836	.	A	G	.	.	PacBio=NoCall;Sqnm=NoCall
+20	25970163	.	C	T	.	.	PacBio=Poly;Sqnm=Poly
+20	29920798	.	C	T	.	.	PacBio=NoCall;Sqnm=NoCall
+20	30007713	.	T	C	.	.	PacBio=Poly;Sqnm=Poly
+20	30051768	.	T	C	.	.	PacBio=Poly;Sqnm=Poly
+20	30183598	.	T	C	.	.	PacBio=Poly;Sqnm=Poly
+20	30604408	.	G	A	.	.	PacBio=NoCall;Sqnm=NoCall
+20	30759940	.	G	T	.	.	PacBio=Poly;Sqnm=Poly
+20	30881454	.	G	T	.	.	PacBio=Poly;Sqnm=Poly
+20	31356560	.	C	T	.	.	PacBio=Poly;Sqnm=Poly
+20	31450036	.	A	G	.	.	PacBio=NoCall;Sqnm=Mono
+20	31589920	.	A	T	.	.	PacBio=Poly;Sqnm=Poly
+20	31922121	.	C	T	.	.	PacBio=NoCall;Sqnm=NoCall
+20	32801430	.	G	C	.	.	PacBio=Poly;Sqnm=Poly
+20	32943975	.	G	T	.	.	PacBio=Mono;Sqnm=Mono
+20	33155812	.	C	A	.	.	PacBio=Poly;Sqnm=Poly
+20	34090682	.	C	T	.	.	PacBio=Poly;Sqnm=Poly
+20	34254080	.	C	T	.	.	PacBio=Mono;Sqnm=NoCall;NotCalledInValidationSamples
+20	34312126	.	C	T	.	.	PacBio=Poly;Sqnm=NoCall
+20	34481504	.	G	A	.	.	PacBio=Poly;Sqnm=Poly
+20	34694577	.	G	A	.	.	PacBio=Poly;Sqnm=Poly
+20	35026572	.	T	C	.	.	PacBio=Poly;Sqnm=Poly
+20	35472344	.	T	G	.	.	PacBio=Poly;Sqnm=Poly
+20	35882698	.	G	A	.	.	PacBio=Poly;Sqnm=NoCall
+20	36044719	.	G	A	.	.	PacBio=Poly;Sqnm=NoCall
+20	36047623	.	C	A	.	.	PacBio=NoCall;Sqnm=NoCall
+20	36204890	.	C	T	.	.	PacBio=Poly;Sqnm=NoCall
+20	36469514	.	G	C	.	.	PacBio=NoCall;Sqnm=Poly
+20	36840217	.	T	C	.	.	PacBio=Poly;Sqnm=Poly
+20	37460945	.	C	T	.	.	PacBio=Mono;Sqnm=Poly
+20	37665246	.	G	A	.	.	PacBio=Poly;Sqnm=NoCall
+20	37732397	.	A	G	.	.	PacBio=Poly;Sqnm=Poly
+20	37874645	.	G	T	.	.	PacBio=Poly;Sqnm=Poly
+20	37958191	.	T	C	.	.	PacBio=Poly;Sqnm=Poly
+20	37996273	.	C	T	.	.	PacBio=Mono;Sqnm=NoCall;NotCalledInValidationSamples
+20	38016547	.	C	T	.	.	PacBio=Poly;Sqnm=Poly
+20	38435682	.	A	G	.	.	PacBio=Poly;Sqnm=Poly
+20	38505534	.	A	T	.	.	PacBio=Poly;Sqnm=Poly
+20	38803278	.	A	G	.	.	PacBio=Poly;Sqnm=Poly
+20	38963803	.	G	C	.	.	PacBio=Poly;Sqnm=Poly
+20	38971986	.	A	G	.	.	PacBio=Poly;Sqnm=Poly
+20	39269586	.	G	A	.	.	PacBio=Poly;Sqnm=Poly
+20	39289390	.	C	A	.	.	PacBio=Mono;Sqnm=Mono;NotCalledInValidationSamples
+20	39318956	.	T	A	.	.	PacBio=Poly;Sqnm=Poly
+20	39736197	.	A	G	.	.	PacBio=Poly;Sqnm=Poly
+20	40241339	.	T	C	.	.	PacBio=Poly;Sqnm=Poly
+20	41473555	.	G	A	.	.	PacBio=Poly;Sqnm=Poly
+20	41878576	.	T	G	.	.	PacBio=Poly;Sqnm=Poly
+20	42022716	.	A	G	.	.	PacBio=Poly;Sqnm=Poly
+20	42033671	.	A	C	.	.	PacBio=NoCall;Sqnm=NoCall
+20	42270334	.	C	T	.	.	PacBio=NoCall;Sqnm=NoCall
+20	42449590	.	C	T	.	.	PacBio=Poly;Sqnm=NoCall
+20	42521157	.	T	G	.	.	PacBio=Poly;Sqnm=Poly
+20	42624300	.	C	A	.	.	PacBio=Poly;Sqnm=Poly
+20	42984548	.	G	A	.	.	PacBio=Poly;Sqnm=Poly
+20	43200148	.	G	C	.	.	PacBio=Poly;Sqnm=Poly
+20	43425384	.	T	G	.	.	PacBio=Poly;Sqnm=Poly
+20	43521990	.	C	G	.	.	PacBio=Poly;Sqnm=Poly
+20	43565804	.	G	A	.	.	PacBio=Poly;Sqnm=Poly
+20	43591237	.	T	C	.	.	PacBio=Poly;Sqnm=Poly
+20	43805929	.	C	T	.	.	PacBio=Poly;Sqnm=Poly
+20	43866692	.	A	G	.	.	PacBio=Poly;Sqnm=Poly
+20	43902088	.	C	T	.	.	PacBio=Poly;Sqnm=Poly
+20	44478507	.	C	A	.	.	PacBio=Poly;Sqnm=Poly
+20	44768810	.	C	T	.	.	PacBio=Poly;Sqnm=Poly
+20	45151582	.	G	A	.	.	PacBio=Poly;Sqnm=Poly
+20	45414003	.	G	A	.	.	PacBio=Poly;Sqnm=Poly
+20	45776825	.	G	C	.	.	PacBio=Poly;Sqnm=Poly
+20	46454905	.	G	A	.	.	PacBio=Poly;Sqnm=NoCall
+20	46823642	.	C	T	.	.	PacBio=Poly;Sqnm=Poly
+20	47001376	.	C	T	.	.	PacBio=Poly;Sqnm=Poly
+20	47079360	.	G	C	.	.	PacBio=Poly;Sqnm=NoCall
+20	47248953	.	G	A	.	.	PacBio=Poly;Sqnm=Poly
+20	47480655	.	C	T	.	.	PacBio=Poly;Sqnm=Poly
+20	47529099	.	T	C	.	.	PacBio=Poly;Sqnm=Poly
+20	47703355	.	A	C	.	.	PacBio=Poly;Sqnm=Poly
+20	47919541	.	A	G	.	.	PacBio=Poly;Sqnm=Poly
+20	48126120	.	A	C	.	.	PacBio=Poly;Sqnm=Poly
+20	48157380	.	G	A	.	.	PacBio=Poly;Sqnm=Poly
+20	48233077	.	C	T	.	.	PacBio=Poly;Sqnm=Poly
+20	48488571	.	G	A	.	.	PacBio=Poly;Sqnm=Poly
+20	48534468	.	G	A	.	.	PacBio=Poly;Sqnm=NoCall
+20	48631385	.	G	C	.	.	PacBio=Poly;Sqnm=Poly
+20	48654970	.	G	A	.	.	PacBio=Poly;Sqnm=NoCall
+20	48708007	.	C	T	.	.	PacBio=Poly;Sqnm=Poly
+20	48979827	.	C	A	.	.	PacBio=Poly;Sqnm=Poly
+20	49100106	.	G	A	.	.	PacBio=Poly;Sqnm=Poly
+20	49509102	.	G	A	.	.	PacBio=Poly;Sqnm=Poly
+20	49631170	.	G	A	.	.	PacBio=Mono;Sqnm=Mono;NotCalledInValidationSamples
+20	50210361	.	C	T	.	.	PacBio=Poly;Sqnm=Poly
+20	50309600	.	C	A	.	.	PacBio=Poly;Sqnm=Poly
+20	50681296	.	T	C	.	.	PacBio=Poly;Sqnm=Poly
+20	50750138	.	A	G	.	.	PacBio=Poly;Sqnm=Poly
+20	51639257	.	G	A	.	.	PacBio=Mono;Sqnm=Poly
+20	51814664	.	T	C	.	.	PacBio=Poly;Sqnm=Poly
+20	51891088	.	C	T	.	.	PacBio=Poly;Sqnm=Poly
+20	52299250	.	A	G	.	.	PacBio=Poly;Sqnm=Poly
+20	52363435	.	G	A	.	.	PacBio=Poly;Sqnm=NoCall
+20	52583941	.	C	T	.	.	PacBio=Poly;Sqnm=Poly
+20	52787584	.	C	T	.	.	PacBio=Poly;Sqnm=Poly
+20	53256945	.	G	A	.	.	PacBio=Poly;Sqnm=Poly
+20	54155398	.	A	G	.	.	PacBio=Poly;Sqnm=Poly
+20	54172374	.	G	T	.	.	PacBio=Poly;Sqnm=Poly
+20	54209446	.	A	G	.	.	PacBio=Mono;Sqnm=Mono;NotCalledInValidationSamples;Sanger=Poly
+20	54317862	.	C	T	.	.	PacBio=Poly;Sqnm=Poly
+20	54852735	.	C	T	.	.	PacBio=Poly;Sqnm=NoCall
+20	54889864	.	G	A	.	.	PacBio=Poly;Sqnm=Poly
+20	55208711	.	G	A	.	.	PacBio=Poly;Sqnm=Poly
+20	55220477	.	G	T	.	.	PacBio=Poly;Sqnm=Poly
+20	55224856	.	G	T	.	.	PacBio=NoCall;Sqnm=NoCall
+20	55441530	.	C	T	.	.	PacBio=Poly;Sqnm=NoCall
+20	55585710	.	C	T	.	.	PacBio=Poly;Sqnm=Poly
+20	55630163	.	C	T	.	.	PacBio=Poly;Sqnm=Poly
+20	56031994	.	A	G	.	.	PacBio=Poly;Sqnm=Poly
+20	56316071	.	T	G	.	.	PacBio=Poly;Sqnm=Poly
+20	56366198	.	C	T	.	.	PacBio=Poly;Sqnm=Poly
+20	56703987	.	G	A	.	.	PacBio=Mono;Sqnm=Mono;NotCalledInValidationSamples;Sanger=Poly
+20	56794829	.	G	C	.	.	PacBio=Poly;Sqnm=Poly
+20	56797026	.	G	A	.	.	PacBio=Poly;Sqnm=Poly
+20	56922427	.	A	G	.	.	PacBio=Poly;Sqnm=Poly
+20	57025102	.	A	T	.	.	PacBio=Poly;Sqnm=Poly
+20	57104529	.	G	A	.	.	PacBio=Poly;Sqnm=Poly
+20	57360225	.	C	T	.	.	PacBio=Poly;Sqnm=Poly
+20	57630386	.	T	A	.	.	PacBio=NoCall;Sqnm=NoCall
+20	57754033	.	G	A	.	.	PacBio=Poly;Sqnm=Poly
+20	57956631	.	C	T	.	.	PacBio=Poly;Sqnm=Poly
+20	57997801	.	C	T	.	.	PacBio=Poly;Sqnm=NoCall
+20	58046279	.	C	G	.	.	PacBio=NoCall;Sqnm=NoCall
+20	58186723	.	A	G	.	.	PacBio=Poly;Sqnm=Poly
+20	58214460	.	C	T	.	.	PacBio=Poly;Sqnm=Poly
+20	58317759	.	A	G	.	.	PacBio=Poly;Sqnm=Poly
+20	58491642	.	A	C	.	.	PacBio=Poly;Sqnm=Poly
+20	58560045	.	C	T	.	.	PacBio=Poly;Sqnm=Poly
+20	58629232	.	C	T	.	.	PacBio=Poly;Sqnm=Poly
+20	58805192	.	G	T	.	.	PacBio=Poly;Sqnm=Poly
+20	58869523	.	A	G	.	.	PacBio=Poly;Sqnm=Poly
+20	59337535	.	T	C	.	.	PacBio=Poly;Sqnm=Poly
+20	59441596	.	G	A	.	.	PacBio=Poly;Sqnm=Poly
+20	59445223	.	G	A	.	.	PacBio=NoCall;Sqnm=NoCall
+20	59605846	.	C	T	.	.	PacBio=Poly;Sqnm=Poly
+20	59864395	.	G	C	.	.	PacBio=Poly;Sqnm=Poly
+20	60099821	.	G	T	.	.	PacBio=Poly;Sqnm=Poly
+20	60290551	.	A	G	.	.	PacBio=Mono;Sqnm=Mono;NotCalledInValidationSamples;Sanger=Poly
+20	60362527	.	G	C	.	.	PacBio=Poly;Sqnm=Poly
+20	60516358	.	C	T	.	.	PacBio=Poly;Sqnm=Poly
+20	60559594	.	C	T	.	.	PacBio=NoCall;Sqnm=Poly
+20	60745115	.	G	A	.	.	PacBio=Poly;Sqnm=Poly
+20	60831300	.	G	A	.	.	PacBio=Poly;Sqnm=Poly
+20	60907675	.	G	A	.	.	PacBio=Poly;Sqnm=Poly
+20	61458191	.	G	A	.	.	PacBio=Poly;Sqnm=Poly
+20	61717607	.	C	T	.	.	PacBio=Mono;Sqnm=Poly
+20	61771154	.	G	A	.	.	PacBio=Poly;Sqnm=Poly
+20	61950497	.	G	A	.	.	PacBio=Poly;Sqnm=Poly
+20	62000091	.	C	T	.	.	PacBio=Poly;Sqnm=Poly
+20	62550780	.	C	T	.	.	PacBio=NoCall;Sqnm=NoCall
+20	62558259	.	T	C	.	.	PacBio=Poly;Sqnm=Poly
+20	62727205	.	C	T	.	.	PacBio=Poly;Sqnm=Poly