X-Git-Url: http://woldlab.caltech.edu/gitweb/?p=pysam.git;a=blobdiff_plain;f=tests%2Fvcf-examples%2F3.vcf;fp=tests%2Fvcf-examples%2F3.vcf;h=a3f2e0f014c122e832401a8ebf61cc75204c2a00;hp=0000000000000000000000000000000000000000;hb=920cc77ed26707a0d92f9e436121b61d84bde627;hpb=8ab946e230447a6fe686edabc5e3cfa445da1721

diff --git a/tests/vcf-examples/3.vcf b/tests/vcf-examples/3.vcf
new file mode 100644
index 0000000..a3f2e0f
--- /dev/null
+++ b/tests/vcf-examples/3.vcf
@@ -0,0 +1,1000 @@
+##fileformat=VCFv4.0
+##filedate=2010-06-21
+##reference=NCBI36
+##INFO=<ID=GC, Number=0, Type=Flag, Description="Overlap with Gencode CCDS coding sequence">
+##INFO=<ID=DP, Number=1, Type=Integer, Description="Total number of reads in haplotype window">
+##INFO=<ID=AF, Number=1, Type=Float, Description="Dindel estimated population allele frequency">
+##INFO=<ID=CA, Number=1, Type=String, Description="Pilot 1 callability mask">
+##INFO=<ID=HP, Number=1, Type=Integer, Description="Reference homopolymer tract length">
+##INFO=<ID=NS, Number=1, Type=Integer, Description="Number of samples with data">
+##INFO=<ID=DB, Number=0, Type=Flag, Description="dbSNP membership build 129 - type match and indel sequence length match within 25 bp">
+##INFO=<ID=NR, Number=1, Type=Integer, Description="Number of reads covering non-ref variant on reverse strand">
+##INFO=<ID=NF, Number=1, Type=Integer, Description="Number of reads covering non-ref variant on forward strand">
+##FILTER=<ID=NoQCALL, Description="Variant called by Dindel but not confirmed by QCALL">
+#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO
+1	1000153	.	TCACAC	TC	100	PASS	AF=0.115095;HP=1;NF=16;NR=13;NS=52;CA=0;DP=615
+1	1000906	.	CAG	CG	48	PASS	AF=0.0772696;HP=1;NF=2;NR=9;NS=51;CA=0;DP=281
+1	1000950	rs60561655;-/G	CGG	CG	100	PASS	AF=0.447771;HP=5;DB;NF=10;NR=20;NS=50;CA=M;DP=291
+1	1010786	rs36095298;-/G,mills,venter	AC	AGC	100	PASS	AF=0.774334;HP=1;DB;NF=21;NR=27;NS=51;CA=0;DP=306
+1	1026158	.	TG	TGGGGGG	100	PASS	AF=0.115637;HP=1;NF=5;NR=2;NS=52;CA=0;DP=591
+1	1028860	mills,venter	ACTCC	AC	10	PASS	AF=0.0107751;HP=1;NF=5;NR=4;NS=52;CA=0;DP=522
+1	1040517	.	CA	CAA	100	PASS	AF=0.0577672;HP=1;NF=7;NR=4;NS=52;CA=0;DP=426
+1	1043690	rs5772037;-/G,venter	TG	TGG	100	PASS	AF=0.065857;HP=3;DB;NF=5;NR=8;NS=51;CA=0;DP=427
+1	1049375	.	TA	TACACACCTGAGCACACACACCTGTGCA	100	PASS	AF=0.0808078;HP=1;NF=1;NR=1;NS=51;CA=M;DP=643
+1	1055459	venter	ACC	AC	100	PASS	AF=0.936429;HP=2;NF=13;NR=24;NS=51;CA=M;DP=342
+1	1056251	rs34287831;-/A,venter	CT	CTT	100	PASS	AF=0.725164;HP=1;DB;NF=31;NR=20;NS=52;CA=0;DP=375
+1	1057459	rs55853944;-/AG,venter	CAGG	CG	100	PASS	AF=0.525146;HP=1;DB;NF=16;NR=18;NS=51;CA=0;DP=331
+1	1057537	rs35574593;-/CC,watson	TG	TGGG	100	PASS	AF=0.591248;HP=1;DB;NF=30;NR=12;NS=50;CA=0;DP=341
+1	1058532	rs34990026;-/A	GTT	GT	100	PASS	AF=0.702381;HP=4;DB;NF=29;NR=32;NS=52;CA=0;DP=405
+1	1058695	rs56086046;-/GCCTGCCTGCCCGGCC,watson	CGCCGCCTGCCTGCCCGG	CG	100	PASS	AF=0.601284;HP=1;DB;NF=24;NR=23;NS=51;CA=0;DP=365
+1	1073880	.	AC	ACC	13	PASS	AF=0.0555821;HP=2;NF=1;NR=6;NS=52;CA=0;DP=457
+1	1087270	mills,venter,watson	CCCCAC	CC	100	PASS	AF=0.990156;HP=4;NF=32;NR=27;NS=50;CA=0;DP=339
+1	1088683	rs5772039;-/C,venter	TCC	TC	100	PASS	AF=0.957928;HP=9;DB;NF=31;NR=26;NS=49;CA=0;DP=336
+1	1093553	.	TC	TCAC	100	PASS	AF=0.962343;HP=5;NF=44;NR=17;NS=51;CA=0;DP=324
+1	1111698	rs57346441;-/TG,watson	CA	CTGA	100	PASS	AF=0.0986662;HP=1;DB;NF=8;NR=5;NS=52;CA=0;DP=528
+1	1117471	.	GT	GTT	48	PASS	AF=0.04843;HP=6;NF=20;NR=8;NS=52;CA=0;DP=510
+1	1118641	.	CT	CTTAT	38	PASS	AF=0.0574453;HP=1;NF=5;NR=1;NS=51;CA=0;DP=424
+1	1119225	rs60117456;-/C	AC	ACC	50	PASS	AF=0.0255886;HP=4;DB;NF=8;NR=5;NS=52;CA=0;DP=522
+1	1121774	.	GCTGTTCAGACCTG	GG	100	PASS	AF=0.0749767;HP=1;NF=6;NR=6;NS=51;CA=0;DP=508
+1	1123178	.	AACA	AA	14	PASS	AF=0.0195065;HP=3;NF=2;NR=3;NS=49;CA=0;DP=329
+1	1134362	.	GGAG	GG	100	PASS	AF=0.142028;HP=2;NF=12;NR=17;NS=51;CA=0;DP=407
+1	1140087	.	TCA	TA	19	PASS	AF=0.0635822;HP=1;NF=2;NR=5;NS=51;CA=0;DP=446
+1	1141951	.	CTG	CG	100	PASS	AF=0.100135;HP=1;NF=7;NR=7;NS=52;CA=0;DP=463
+1	1148304	rs34808371;-/GT,venter	GCAC	GC	100	PASS	AF=0.0786699;HP=1;DB;NF=11;NR=18;NS=52;CA=0;DP=687
+1	1148425	rs57524763;-/AC	AACA	AA	100	PASS	AF=0.0744913;HP=2;DB;NF=17;NR=8;NS=51;CA=0;DP=647
+1	1149524	.	GTTTTAT	GT	100	PASS	AF=0.0475567;HP=4;NF=19;NR=14;NS=50;CA=0;DP=395
+1	1150963	.	CGCCACAGACACGGGCCACACACTCCACATG	CG	100	PASS	AF=0.111384;HP=1;NF=46;NR=28;NS=50;CA=0;DP=510
+1	1151863	.	GT	GCT	100	PASS	AF=0.126132;HP=1;NF=8;NR=7;NS=52;CA=0;DP=416
+1	1153674	rs3831195;-/ACAG	GG	GGACAG	18	PASS	AF=0.0388728;HP=2;DB;NF=3;NR=2;NS=51;CA=0;DP=418
+1	1154612	.	GT	GCT	100	PASS	AF=0.0630518;HP=1;NF=7;NR=4;NS=52;CA=0;DP=531
+1	1155143	.	GCAC	GC	100	PASS	AF=0.0991605;HP=1;NF=25;NR=23;NS=52;CA=0;DP=540
+1	1155183	.	CATG	CG	100	PASS	AF=0.0714383;HP=1;NF=5;NR=8;NS=52;CA=0;DP=527
+1	1156953	rs57672822;-/ACCCCGGGA	CCCCCGGGAAC	CC	59	PASS	AF=0.0847102;HP=5;DB;NF=5;NR=8;NS=50;CA=0;DP=312
+1	1164370	.	AA	AACATGCATCCA	100	PASS	AF=0.0550752;HP=2;NF=2;NR=1;NS=51;CA=0;DP=481
+1	1166826	.	AC	ACC	11	PASS	AF=0.0735648;HP=1;NF=1;NR=10;NS=52;CA=0;DP=379
+1	1167781	rs3835300;-/T	CTG	CG	100	PASS	AF=0.0719128;HP=1;DB;NF=3;NR=3;NS=50;CA=0;DP=360
+1	1180776	rs35025185;-/T,mills	CTT	CT	15	PASS	AF=0.0182173;HP=3;DB;NF=5;NR=1;NS=52;CA=0;DP=526
+1	1184391	.	GC	GCAC	16	PASS	AF=0.0187867;HP=1;NF=2;NR=6;NS=51;CA=M;DP=521
+1	1204971	.	TGG	TG	100	PASS	AF=0.0564084;HP=6;NF=11;NR=6;NS=50;CA=0;DP=419
+1	1207801	rs35647244;-/GT,watson	CC	CCAC	100	PASS	AF=0.034013;HP=2;DB;NF=9;NR=4;NS=52;CA=0;DP=624
+1	1213486	.	GTCT	GT	100	PASS	AF=0.504039;HP=1;NF=9;NR=5;NS=50;CA=M;DP=372
+1	1217527	rs3831920;-/CTCA,watson	TTGAGT	TT	100	PASS	AF=0.098042;HP=2;DB;NF=11;NR=14;NS=51;CA=0;DP=444
+1	1224625	.	AGG	AG	40	PASS	AF=0.0395551;HP=5;NF=4;NR=4;NS=51;CA=0;DP=406
+1	1228918	rs35156558;-/GGA,venter	CC	CCCTC	100	PASS	AF=0.999996;HP=5;DB;NF=24;NR=30;NS=49;CA=0;DP=268
+1	1232491	.	CTACCTGACCTTC	CC	13	PASS	AF=0.0510512;HP=1;NF=5;NR=5;NS=52;CA=0;DP=510
+1	1236119	.	CGGCTCTGGGTCACAGGTG	CG	17	PASS	AF=0.0581287;HP=2;NF=6;NR=8;NS=49;CA=M;DP=277
+1	1245266	rs5772041;-/G,venter	TGG	TG	100	PASS	AF=0.928175;HP=4;DB;NF=39;NR=39;NS=52;CA=0;DP=431
+1	1286232	venter,watson	GACA	GA	100	PASS	AF=0.878082;HP=1;NF=31;NR=15;NS=50;CA=0;DP=249
+1	1292184	watson	TG	TGTGTGCAG	100	PASS	AF=0.92351;HP=1;NF=36;NR=17;NS=51;CA=0;DP=633
+1	1475307	rs35008066;-/G,venter	GCC	GC	59	PASS	AF=0.0854422;HP=2;DB;NF=2;NR=3;NS=52;CA=0;DP=372
+1	1476800	rs3835461;-/C	AG	AGG	100	PASS	AF=0.239098;HP=1;DB;NF=13;NR=18;NS=52;CA=0;DP=491
+1	1482738	rs34962853;-/AT,watson	CATA	CA	100	PASS	AF=0.1747;HP=1;DB;NF=28;NR=14;NS=51;CA=0;DP=441
+1	1483969	rs3835460;-/T,mills	CG	CAG	100	PASS	AF=0.180671;HP=5;DB;NF=6;NR=13;NS=52;CA=0;DP=512
+1	1484993	rs35384209;-/CT	CA	CAGA	100	PASS	AF=0.182804;HP=1;DB;NF=9;NR=15;NS=52;CA=0;DP=441
+1	1485720	.	TC	TCGTAC	39	PASS	AF=0.0207216;HP=1;NF=1;NR=3;NS=51;CA=0;DP=498
+1	1487504	rs35885836;-/AGAA,venter,watson	TTTTCT	TT	100	PASS	AF=0.210263;HP=4;DB;NF=16;NR=20;NS=52;CA=0;DP=574
+1	1490348	rs3835459;-/CATGATCCGCCTGCCTT	CAAGGCAGGCGGATCATGA	CA	59	PASS	AF=0.230233;HP=2;DB;NF=5;NR=66;NS=51;CA=M;DP=377
+1	1490873	.	GT	GGGCCCGACGGTGCT	100	PASS	AF=0.133846;HP=1;NF=8;NR=3;NS=52;CA=0;DP=572
+1	1495811	venter	ACC	AC	100	PASS	AF=0.232263;HP=8;NF=12;NR=29;NS=52;CA=0;DP=481
+1	1502734	rs35576478;-/G,venter	AC	ACC	100	PASS	AF=0.221604;HP=4;DB;NF=16;NR=9;NS=51;CA=0;DP=388
+1	1507556	.	AC	ACC	42	PASS	AF=0.0176775;HP=1;NF=1;NR=4;NS=51;CA=0;DP=511
+1	1508235	.	CT	CTT	100	PASS	AF=0.2555;HP=1;NF=18;NR=15;NS=51;CA=0;DP=535
+1	1508689	.	CG	CGG	100	PASS	AF=0.0922424;HP=5;NF=19;NR=17;NS=51;CA=0;DP=568
+1	1510533	.	TTTTGT	TT	100	PASS	AF=0.423696;HP=7;NF=37;NR=39;NS=52;CA=0;DP=387
+1	1511216	.	TA	TAATAATAATAAAA	39	PASS	AF=0.542394;HP=2;NF=7;NR=3;NS=51;CA=0;DP=331
+1	1512041	.	CAAAAGTAAA	CA	33	PASS	AF=0.0333379;HP=4;NF=12;NR=13;NS=52;CA=0;DP=440
+1	1514403	.	TTTTAT	TT	100	PASS	AF=0.771875;HP=5;NF=24;NR=58;NS=50;CA=0;DP=243
+1	1520133	rs34595829;-/GT,venter	GA	GACA	100	PASS	AF=0.432871;HP=1;DB;NF=24;NR=19;NS=52;CA=0;DP=966
+1	1520238	venter,watson	TG	TGAGACAG	100	PASS	AF=0.606404;HP=1;NF=52;NR=36;NS=52;CA=M;DP=847
+1	1520271	.	CA	CAGA	100	PASS	AF=0.169509;HP=1;NF=48;NR=39;NS=52;CA=M;DP=736
+1	1520357	.	CAGAGAGA	CA	100	PASS	AF=0.218715;HP=1;NF=44;NR=30;NS=52;CA=M;DP=708
+1	1520549	.	CAGA	CA	100	PASS	AF=0.257166;HP=1;NF=41;NR=40;NS=52;CA=0;DP=790
+1	1520595	.	CAGA	CA	100	PASS	AF=0.107822;HP=1;NF=52;NR=44;NS=52;CA=M;DP=804
+1	1520983	.	GA	GAGAGAGACA	34	PASS	AF=0.0372679;HP=1;NF=2;NR=3;NS=52;CA=0;DP=610
+1	1521139	.	GA	GAGACA	100	PASS	AF=0.667375;HP=1;NF=10;NR=7;NS=52;CA=M;DP=537
+1	1521387	.	GAGACA	GA	100	PASS	AF=0.361313;HP=1;NF=13;NR=34;NS=52;CA=M;DP=598
+1	1521833	.	GACA	GA	100	PASS	AF=0.193306;HP=1;NF=23;NR=17;NS=52;CA=0;DP=737
+1	1522371	.	CC	CCCTCAGCTGGACTC	100	PASS	AF=0.480499;HP=3;NF=11;NR=12;NS=51;CA=0;DP=535
+1	1530305	.	AG	AGG	15	PASS	AF=0.0737746;HP=3;NF=13;NR=4;NS=51;CA=0;DP=569
+1	1536491	rs36101309;-/GA	ATCT	AT	100	PASS	AF=0.128408;HP=1;DB;NF=22;NR=14;NS=51;CA=0;DP=621
+1	1537805	venter	TT	TCT	100	PASS	AF=0.350404;HP=8;NF=3;NR=18;NS=52;CA=M;DP=419
+1	1539301	.	CAAAAGA	CA	56	PASS	AF=0.0156055;HP=4;NF=9;NR=2;NS=51;CA=0;DP=577
+1	1549566	venter	ATT	AT	100	PASS	AF=0.505899;HP=3;NF=25;NR=27;NS=52;CA=0;DP=451
+1	1554815	.	TGG	TG	100	PASS	AF=0.158582;HP=6;NF=12;NR=6;NS=48;CA=0;DP=271
+1	1575329	.	GCAAC	GC	12	PASS	AF=0.0174116;HP=1;NF=27;NR=21;NS=52;CA=0;DP=554
+1	1575977	rs35072492;-/A	TCC	TC	100	PASS	AF=0.626664;HP=3;DB;NF=23;NR=50;NS=51;CA=0;DP=361
+1	1577203	venter,watson	AA	AAAACA	100	PASS	AF=0.979791;HP=4;NF=59;NR=37;NS=52;CA=0;DP=498
+1	1584062	rs5772057;-/T,venter	CT	CTT	100	PASS	AF=0.992883;HP=1;DB;NF=34;NR=22;NS=46;CA=0;DP=291
+1	1589954	.	TTGT	TT	100	PASS	AF=0.0452889;HP=8;NF=5;NR=13;NS=51;CA=0;DP=424
+1	1611607	venter	ATA	AA	100	PASS	AF=0.528232;HP=1;NF=7;NR=10;NS=50;CA=M;DP=243
+1	1615408	venter	AC	ACGC	100	PASS	AF=0.553544;HP=9;NF=16;NR=20;NS=51;CA=M;DP=247
+1	1618248	.	CTGA	CA	100	PASS	AF=0.0412633;HP=1;NF=5;NR=2;NS=51;CA=0;DP=789
+1	1637509	venter	CG	CTG	100	PASS	AF=0.956642;HP=1;NF=57;NR=41;NS=52;CA=M;DP=533
+1	1637828	rs34259364;-/AT,mills	CG	CATG	100	PASS	AF=0.24683;HP=1;DB;NF=5;NR=57;NS=52;CA=0;DP=744
+1	1638199	.	GA	GATGTTAA	100	PASS	AF=0.962724;HP=1;NF=22;NR=22;NS=52;CA=0;DP=480
+1	1638366	venter	AT	ATT	100	PASS	AF=0.471703;HP=4;NF=50;NR=16;NS=52;CA=0;DP=738
+1	1638469	rs34392519;-/AGC,mills	GA	GAGCA	100	PASS	AF=0.428728;HP=1;DB;NF=34;NR=23;NS=52;CA=0;DP=804
+1	1639339	rs36127854;-/CT,venter	TA	TAGA	100	PASS	AF=0.27562;HP=1;DB;NF=10;NR=15;NS=52;CA=0;DP=961
+1	1639610	.	ATTCTC	AC	59	PASS	AF=0.0697107;HP=2;NF=31;NR=24;NS=52;CA=M;DP=817
+1	1640937	venter	CG	CTCGCTCTGTCACCCAGGCTG	100	PASS	AF=0.639983;HP=2;NF=4;NR=3;NS=52;CA=M;DP=638
+1	1641995	rs34986248;-/ATT,venter,watson	CT	CTTAT	100	PASS	AF=0.924551;HP=2;DB;NF=33;NR=29;NS=52;CA=0;DP=414
+1	1654133	rs34171153;-/ATCG	TA	TATCGA	100	PASS	AF=0.2409;HP=1;DB;NF=10;NR=13;NS=52;CA=0;DP=463
+1	1656307	rs35516110;-/GTTT,venter	GT	GGTTTT	100	PASS	AF=0.686901;HP=6;DB;NF=22;NR=20;NS=51;CA=0;DP=293
+1	1674207	venter	CC	CCCTC	100	PASS	AF=0.303909;HP=3;NF=26;GC;NR=29;NS=52;CA=0;DP=534
+1	1675781	.	TCCCTGGGACCGAAGTCGCCCCAC	TC	100	PASS	AF=0.270579;HP=3;NF=25;NR=24;NS=52;CA=0;DP=473
+1	1679986	rs35357728;-/TG,mills,venter,watson	AA	AACA	100	PASS	AF=0.956895;HP=4;DB;NF=60;NR=58;NS=52;CA=0;DP=520
+1	1684058	.	AAATGA	AA	100	PASS	AF=0.508762;HP=4;NF=48;NR=55;NS=52;CA=0;DP=471
+1	1684177	.	TG	TGGGGGGGG	100	PASS	AF=0.126497;HP=1;NF=5;NR=3;NS=51;CA=0;DP=449
+1	1691268	rs35459537;-/AAAAACAAAAAC,mills,venter	CAAAACAAAAACAA	CA	100	PASS	AF=0.305762;HP=4;DB;NF=54;NR=62;NS=51;CA=0;DP=443
+1	1697760	mills,venter	GAAACA	GA	100	PASS	AF=0.276545;HP=3;NF=21;NR=43;NS=52;CA=0;DP=564
+1	1700966	rs34974144;-/AT,venter	TT	TTGT	100	PASS	AF=0.37365;HP=3;DB;NF=34;NR=30;NS=52;CA=0;DP=445
+1	1715347	.	TG	TGGGGGG	24	PASS	AF=0.0415083;HP=1;NF=4;NR=5;NS=52;CA=0;DP=519
+1	1717050	rs56070879;-/ACAAAAAA,venter	TC	TCAAAAAAAC	100	PASS	AF=0.90619;HP=1;DB;NF=11;NR=7;NS=52;CA=0;DP=442
+1	1729683	.	ACT	AT	100	PASS	AF=0.104273;HP=1;NF=9;NR=11;NS=52;CA=0;DP=587
+1	1729941	rs55730045;-/TTTG,watson	TTTTGT	TT	100	PASS	AF=0.270089;HP=5;DB;NF=25;NR=44;NS=52;CA=M;DP=458
+1	1733706	rs4012956;-/GT,mills,venter	TA	TACA	100	PASS	AF=0.737658;HP=1;DB;NF=58;NR=26;NS=52;CA=M;DP=547
+1	1750193	rs34820549;-/TG,venter	TA	TACA	100	PASS	AF=0.417596;HP=1;DB;NF=42;NR=29;NS=52;CA=0;DP=495
+1	1761838	.	GCAC	GC	17	PASS	AF=0.0186129;HP=1;NF=23;NR=23;NS=52;CA=0;DP=566
+1	1767123	.	TACACACACACACACACACACACACACACACA	TA	100	PASS	AF=0.205885;HP=1;NF=32;NR=32;NS=52;CA=0;DP=560
+1	1767308	.	AG	ATG	12	PASS	AF=0.363076;HP=2;NF=25;NR=12;NS=52;CA=0;DP=611
+1	1768358	.	ACA	AA	11	NoQCALL	AF=0.0311546;HP=1;NF=1;NR=4;NS=52;CA=0;DP=502
+1	1768592	.	AC	ACAACAAAATCCCTTTTTC	100	PASS	AF=0.0974177;HP=1;NF=2;NR=5;NS=52;CA=0;DP=597
+1	1769336	rs34011234;-/TA,venter,watson	CT	CTAT	100	PASS	AF=0.385782;HP=1;DB;NF=21;NR=42;NS=52;CA=0;DP=534
+1	1769673	rs56979938;-/A,venter	AGA	AA	21	PASS	AF=0.232442;HP=1;DB;NF=9;NR=3;NS=52;CA=0;DP=465
+1	1771291	.	TG	TGG	100	PASS	AF=0.18937;HP=2;NF=5;NR=15;NS=52;CA=0;DP=590
+1	1778545	.	TA	TAAA	100	PASS	AF=0.155668;HP=3;NF=5;NR=12;NS=52;CA=0;DP=621
+1	1778604	rs34483468;-/AGCC,venter	GG	GGGCTG	100	PASS	AF=0.135521;HP=4;DB;NF=22;NR=28;NS=52;CA=0;DP=629
+1	1786587	watson	ACCA	AA	26	PASS	AF=0.0677562;HP=2;NF=15;NR=22;NS=52;CA=M;DP=404
+1	1797136	rs59528461;-/C,venter	TCC	TC	100	PASS	AF=0.94689;HP=10;DB;NF=58;NR=57;NS=52;CA=0;DP=531
+1	1797791	rs35226472;-/CT,venter	CG	CGAG	100	PASS	AF=0.383219;HP=1;DB;NF=64;NR=38;NS=52;CA=0;DP=673
+1	1802225	rs34339560;-/A,mills,venter	CAA	CA	100	PASS	AF=0.973419;HP=2;DB;NF=64;NR=71;NS=52;CA=0;DP=635
+1	1802305	.	GGAG	GG	100	PASS	AF=0.273326;HP=2;NF=41;NR=34;NS=52;CA=0;DP=695
+1	1806743	.	TTAGAT	TT	100	PASS	AF=0.179706;HP=2;NF=9;NR=6;NS=52;CA=0;DP=377
+1	1809681	.	AG	AGG	21	PASS	AF=0.133833;HP=2;NF=7;NR=3;NS=52;CA=0;DP=482
+1	1810283	.	AC	ACC	30	PASS	AF=0.0430128;HP=2;NF=4;NR=11;NS=52;CA=0;DP=523
+1	1810555	.	CTTAAT	CT	100	PASS	AF=0.0498379;HP=2;NF=9;NR=7;NS=52;CA=0;DP=521
+1	1812953	rs34135959;-/TCTC	CA	CAGAGA	100	PASS	AF=0.311555;HP=1;DB;NF=6;NR=8;NS=42;CA=0;DP=242
+1	1819911	.	CATG	CG	100	PASS	AF=0.0319085;HP=1;NF=3;NR=6;NS=52;CA=0;DP=765
+1	1819947	rs60517384;-/AAGTTGGATATACACACAT	CACACACATAAGTTGGATATA	CA	100	PASS	AF=0.0935091;HP=1;DB;NF=59;NR=69;NS=52;CA=0;DP=854
+1	1825723	venter	AA	AAAATAAATAAATA	100	PASS	AF=0.348026;HP=4;NF=9;NR=10;NS=52;CA=0;DP=373
+1	1835530	.	GTGAGAGTTGTTG	GG	100	PASS	AF=0.15298;HP=1;NF=12;NR=1;NS=51;CA=0;DP=528
+1	1838692	rs5772055;-/AC,mills	AA	AACA	100	PASS	AF=0.0441449;HP=3;DB;NF=2;NR=3;NS=51;CA=0;DP=360
+1	1843475	rs3039777;-/ACTG,venter,watson	TC	TCTGAC	100	PASS	AF=0.999998;HP=1;DB;NF=38;NR=39;NS=50;CA=0;DP=422
+1	1850674	.	AGG	AG	100	PASS	AF=0.474687;HP=3;NF=7;NR=1;NS=49;CA=0;DP=271
+1	1855740	watson	GT	GTGTAT	100	PASS	AF=0.646893;HP=1;NF=42;NR=28;NS=51;CA=0;DP=653
+1	1856762	.	CACAGG	CG	14	PASS	AF=0.0324715;HP=1;NF=1;NR=2;NS=50;CA=M;DP=379
+1	1857166	.	TACA	TA	100	PASS	AF=0.0531955;HP=1;NF=39;NR=29;NS=52;CA=0;DP=634
+1	1859140	mills	ACACCAGGTCCACCTCTGGACACAGGTCCACCC	AC	100	PASS	AF=0.180806;HP=1;NF=26;NR=15;NS=52;CA=0;DP=672
+1	1859353	rs35385292;-/TC,venter	ACTC	AC	100	PASS	AF=0.493919;HP=1;DB;NF=26;NR=38;NS=52;CA=M;DP=641
+1	1859424	rs34242289;-/CA,venter	TCAG	TG	100	PASS	AF=0.3962;HP=1;DB;NF=40;NR=32;NS=52;CA=M;DP=695
+1	1859520	.	TCAC	TC	100	PASS	AF=0.234548;HP=1;NF=26;NR=23;NS=52;CA=0;DP=729
+1	1859631	rs35205487;-/GA,venter	AC	ACTC	100	PASS	AF=0.347295;HP=1;DB;NF=15;NR=28;NS=52;CA=0;DP=710
+1	1859792	rs34050188;-/AT,watson	CG	CATG	100	PASS	AF=0.715253;HP=1;DB;NF=35;NR=44;NS=52;CA=0;DP=590
+1	1864576	.	CG	CGG	13	PASS	AF=0.0158703;HP=1;NF=3;NR=2;NS=51;CA=0;DP=556
+1	1867274	rs34832935;-/C	TGG	TG	100	PASS	AF=0.304336;HP=8;DB;NF=38;NR=23;NS=51;CA=0;DP=538
+1	1869711	rs56005703;-/ATAT,watson	AA	AATATA	100	PASS	AF=0.652198;HP=3;DB;NF=16;NR=16;NS=51;CA=0;DP=349
+1	1870233	.	TC	TCCCTCCCTTCTTTCCTTCCCTTTCCCTCC	100	PASS	AF=0.408049;HP=2;NF=11;NR=9;NS=52;CA=0;DP=814
+1	1870305	.	CC	CCTTTCCCTCCCTTACTCCTTCCTTCCTTC	100	PASS	AF=0.121733;HP=4;NF=1;NR=5;NS=52;CA=0;DP=680
+1	1870363	.	CT	CTT	100	PASS	AF=0.11398;HP=2;NF=4;NR=6;NS=52;CA=0;DP=680
+1	1870863	rs35875775;-/C,venter	TT	TGT	100	PASS	AF=0.744276;HP=2;DB;NF=43;NR=22;NS=52;CA=0;DP=455
+1	1873164	.	GT	GTT	100	PASS	AF=0.387355;HP=3;NF=20;NR=18;NS=52;CA=0;DP=523
+1	1873889	rs58267869;-/AAGA	AA	AAAAGA	100	PASS	AF=0.252999;HP=5;DB;NF=57;NR=31;NS=52;CA=0;DP=536
+1	1874122	rs35595511;-/T	TAA	TA	100	PASS	AF=0.338059;HP=9;DB;NF=38;NR=38;NS=51;CA=0;DP=519
+1	1876064	watson	AG	AGAGTG	100	PASS	AF=0.0829624;HP=1;NF=6;NR=5;NS=52;CA=0;DP=465
+1	1876204	.	AC	ACAGC	100	PASS	AF=0.256855;HP=1;NF=14;NR=10;NS=52;CA=0;DP=483
+1	1876616	.	GC	GCTGGTGCGCGTC	100	PASS	AF=0.0656988;HP=1;NF=5;NR=2;NS=51;CA=0;DP=420
+1	1876971	rs3838975;-/G	GCC	GC	21	PASS	AF=0.201137;HP=2;DB;NF=15;NR=6;NS=52;CA=0;DP=439
+1	1877704	.	CCTGC	CC	19	PASS	AF=0.0183173;HP=2;NF=7;NR=13;NS=52;CA=0;DP=436
+1	1884832	rs34937714;-/T	CA	CAA	100	PASS	AF=0.254902;HP=3;DB;NF=27;NR=6;NS=52;CA=0;DP=449
+1	1886549	rs3838974;-/T	GG	GAG	100	PASS	AF=0.153123;HP=4;DB;NF=11;NR=10;NS=52;CA=0;DP=456
+1	1889260	rs55954278;-/ATGA	GT	GTGAAT	100	PASS	AF=0.630203;HP=1;DB;NF=12;NR=17;NS=52;CA=0;DP=656
+1	1889311	.	GTGAAT	GT	100	PASS	AF=0.167491;HP=1;NF=33;NR=18;NS=52;CA=0;DP=606
+1	1889402	rs34520694;-/GTGA	AT	ATGAGT	100	PASS	AF=0.306146;HP=1;DB;NF=24;NR=32;NS=52;CA=0;DP=916
+1	1889884	rs56985589;-/G	TGC	TC	100	PASS	AF=0.347999;HP=1;DB;NF=20;NR=28;NS=51;CA=0;DP=537
+1	1889966	rs61233860;-/CCT,watson	TC	TCTCC	100	PASS	AF=0.211403;HP=1;DB;NF=12;NR=14;NS=52;CA=0;DP=554
+1	1892548	.	ACTC	AC	21	PASS	AF=0.0207771;HP=1;NF=4;NR=3;NS=52;CA=0;DP=750
+1	1900826	.	AACA	AA	100	PASS	AF=0.122368;HP=2;NF=13;NR=6;NS=52;CA=M;DP=435
+1	1908846	venter	CT	CTT	100	PASS	AF=0.30139;HP=10;NF=11;NR=28;NS=51;CA=0;DP=350
+1	1910458	.	TGAG	TG	15	PASS	AF=0.0208928;HP=1;NF=23;NR=12;NS=52;CA=0;DP=514
+1	1927207	rs61162553;-/GTTCTCTCTCTCTCTCTCTC,venter	CTCTCTCTCTCTCTCTCTCGTT	CT	100	PASS	AF=0.399955;HP=1;DB;NF=34;NR=47;NS=51;CA=0;DP=427
+1	1929307	rs36066718;-/T	CAA	CA	30	PASS	AF=0.114706;HP=10;DB;NF=24;NR=15;NS=52;CA=0;DP=520
+1	1933578	.	CA	CAAAATAAAATA	100	PASS	AF=0.562689;HP=4;NF=21;NR=28;NS=52;CA=0;DP=359
+1	1947079	rs3831907;-/C	CGG	CG	100	PASS	AF=0.131218;HP=3;DB;NF=4;NR=10;NS=52;CA=0;DP=316
+1	1949721	rs35354651;-/G	GC	GCC	100	PASS	AF=0.218024;HP=1;DB;NF=11;NR=5;NS=51;CA=0;DP=306
+1	1965555	rs56225932;-/CA,venter	TACA	TA	100	PASS	AF=0.743144;HP=1;DB;NF=50;NR=67;NS=52;CA=0;DP=679
+1	1966402	venter,watson	GC	GCCGCC	100	PASS	AF=0.988372;HP=2;NF=36;NR=16;NS=46;CA=0;DP=232
+1	1989567	.	AC	ACC	12	PASS	AF=0.0334278;HP=6;NF=10;NR=9;NS=52;CA=0;DP=367
+1	1992350	.	CA	CACCTGGGCGTGTGA	56	PASS	AF=0.19029;HP=1;NF=6;NR=3;NS=52;CA=0;DP=412
+1	1993852	rs34106910;-/G,venter	GCC	GC	100	PASS	AF=0.178292;HP=2;DB;NF=15;NR=7;NS=51;CA=0;DP=388
+1	1996153	.	GT	GTT	59	PASS	AF=0.126167;HP=8;NF=7;NR=14;NS=51;CA=0;DP=436
+1	2010531	rs35300904;-/C,venter	CA	CGA	100	PASS	AF=0.2131;HP=1;DB;NF=18;NR=7;NS=52;CA=0;DP=418
+1	2019409	rs55716481;-/AGTGACTAAGGTGACCAGG,venter	CA	CAGGTGACCAGGAGTGACTAA	100	PASS	AF=0.901172;HP=1;DB;NF=17;NR=16;NS=52;CA=0;DP=600
+1	2019867	rs58602729;-/CT	CCTC	CC	100	PASS	AF=0.15521;HP=3;DB;NF=6;NR=12;NS=52;CA=0;DP=542
+1	2019961	mills	CGTTTTGTTTTG	CG	100	PASS	AF=0.239816;HP=1;NF=44;NR=59;NS=52;CA=0;DP=513
+1	2027926	.	CT	CTT	100	PASS	AF=0.591615;HP=1;NF=7;NR=4;NS=51;CA=M;DP=262
+1	2028042	.	CT	CTT	100	PASS	AF=0.242884;HP=1;NF=28;NR=12;NS=51;CA=M;DP=738
+1	2031773	.	GA	GGGTA	100	PASS	AF=0.197429;HP=1;NF=15;NR=7;NS=51;CA=0;DP=405
+1	2036771	.	AC	ACCCC	100	PASS	AF=0.173415;HP=3;NF=1;NR=5;NS=52;CA=0;DP=532
+1	2040362	venter	CT	CTT	100	PASS	AF=0.61548;HP=3;NF=31;NR=33;NS=52;CA=0;DP=522
+1	2042747	.	CG	CGGGGG	100	PASS	AF=0.132985;HP=2;NF=11;NR=6;NS=51;CA=0;DP=880
+1	2042976	.	GT	GTTATT	100	PASS	AF=0.225391;HP=2;NF=13;NR=25;NS=51;CA=M;DP=882
+1	2045297	.	GT	GTAGTTATT	36	PASS	AF=0.513037;HP=2;NF=5;NR=16;NS=46;CA=M;DP=269
+1	2048642	rs56348719;-/A	CAG	CG	100	PASS	AF=0.626672;HP=1;DB;NF=15;NR=37;NS=51;CA=0;DP=337
+1	2055895	watson	AT	AATT	100	PASS	AF=0.183323;HP=1;NF=10;NR=14;NS=52;CA=0;DP=511
+1	2058884	watson	GCCTC	GC	100	PASS	AF=0.258368;HP=2;NF=23;NR=18;NS=51;CA=0;DP=533
+1	2068674	.	CTCTAT	CT	100	PASS	AF=0.0693035;HP=1;NF=7;NR=5;NS=52;CA=0;DP=600
+1	2076576	.	GTGAT	GT	100	PASS	AF=0.0691863;HP=1;NF=32;NR=24;NS=52;CA=0;DP=918
+1	2076741	.	GTGAT	GT	49	PASS	AF=0.200249;HP=1;NF=13;NR=21;NS=51;CA=0;DP=758
+1	2076895	.	GTGAT	GT	100	PASS	AF=0.134423;HP=1;NF=21;NR=19;NS=51;CA=0;DP=658
+1	2076954	rs60433546;-/ATG	AA	AATGA	100	PASS	AF=0.310432;HP=2;DB;NF=12;NR=27;NS=52;CA=0;DP=664
+1	2079377	rs3835418;-/T	CT	CTT	100	PASS	AF=0.201153;HP=1;DB;NF=13;NR=15;NS=52;CA=0;DP=451
+1	2081537	rs56068331;-/GTGT	CGTGTG	CG	13	PASS	AF=0.276967;HP=1;DB;NF=58;NR=66;NS=52;CA=0;DP=516
+1	2085600	rs3835419;-/CTGGGCCAACCC	GA	GACCCCTGGGCCAA	100	PASS	AF=0.243746;HP=1;DB;NF=11;NR=6;NS=52;CA=0;DP=535
+1	2087974	.	GCC	GC	15	PASS	AF=0.0623565;HP=8;NF=7;NR=14;NS=52;CA=0;DP=325
+1	2089182	rs34571180;-/CTC,mills,venter	GCCTC	GC	100	PASS	AF=0.116512;HP=2;DB;NF=9;NR=4;NS=51;CA=0;DP=440
+1	2089950	.	CG	CGGGG	100	PASS	AF=0.178382;HP=2;NF=20;NR=7;NS=51;CA=0;DP=444
+1	2091793	rs56317708;-/GATA,venter,watson	AA	AAGATA	100	PASS	AF=0.896718;HP=2;DB;NF=37;NR=55;NS=52;CA=0;DP=525
+1	2094394	watson	TCCACC	TC	100	PASS	AF=0.191274;HP=2;NF=15;NR=11;NS=52;CA=0;DP=554
+1	2099298	.	TG	TGG	100	PASS	AF=0.234547;HP=1;NF=15;NR=4;NS=51;CA=0;DP=434
+1	2101678	.	AGACG	AG	100	PASS	AF=0.0220699;HP=1;NF=10;NR=4;NS=51;CA=0;DP=533
+1	2104518	rs55672189;-/CGTCTC,venter	AG	AGTCTCCG	32	PASS	AF=0.0318159;HP=1;DB;NF=1;NR=2;NS=51;CA=0;DP=303
+1	2110593	rs34825103;-/C	TG	TGG	100	PASS	AF=0.0674605;HP=1;DB;NF=1;NR=4;NS=52;CA=M;DP=336
+1	2114205	.	TT	TTTGT	14	PASS	AF=0.0440601;HP=4;NF=24;NR=27;NS=52;CA=0;DP=414
+1	2118677	rs35613376;-/T,venter	GA	GAA	100	PASS	AF=0.110597;HP=1;DB;NF=4;NR=6;NS=51;CA=0;DP=395
+1	2129208	venter	CGTGTGTGTGTGTGTGTGTGTG	CG	100	PASS	AF=0.312577;HP=1;NF=50;NR=42;NS=51;CA=0;DP=395
+1	2136104	rs34745034;-/AC,venter,watson	CTGT	CT	100	PASS	AF=0.148774;HP=1;DB;NF=9;NR=15;NS=51;CA=0;DP=394
+1	2147798	.	CGG	CG	100	PASS	AF=0.069257;HP=5;NF=3;NR=7;NS=51;CA=0;DP=433
+1	2156467	rs34646035;-/A,venter	GG	GTG	100	PASS	AF=0.0650203;HP=2;DB;NF=3;NR=2;NS=51;CA=0;DP=299
+1	2163248	rs34969427;-/CA,venter,watson	CT	CTGT	59	PASS	AF=0.323344;HP=1;DB;NF=36;NR=42;NS=52;CA=0;DP=622
+1	2168152	rs34184068;-/C	TG	TGG	100	PASS	AF=0.267631;HP=8;DB;NF=12;NR=25;NS=52;CA=0;DP=462
+1	2173905	rs59705675;-/C,venter	GCC	GC	100	PASS	AF=0.519185;HP=4;DB;NF=28;NR=31;NS=52;CA=0;DP=472
+1	2178426	.	ATCTCT	AT	59	PASS	AF=0.0153899;HP=1;NF=1;NR=2;NS=52;CA=0;DP=558
+1	2180516	.	TG	TGGG	15	PASS	AF=0.10873;HP=1;NF=7;NR=3;NS=52;CA=0;DP=495
+1	2193017	rs35691128;-/C,venter	TG	TGG	100	PASS	AF=0.296206;HP=9;DB;NF=9;NR=11;NS=52;CA=0;DP=367
+1	2204648	.	AGGGG	AG	100	PASS	AF=0.0847086;HP=8;NF=9;NR=7;NS=52;CA=0;DP=441
+1	2211603	.	TG	TGGGGGGGGGG	100	PASS	AF=0.176;HP=1;NF=5;NR=9;NS=52;CA=0;DP=507
+1	2211835	rs35471620;-/C,venter	CG	CGG	100	PASS	AF=0.403922;HP=3;DB;NF=20;NR=20;NS=51;CA=0;DP=363
+1	2213004	rs35841716;-/G,mills,venter	TGG	TG	100	PASS	AF=0.938006;HP=7;DB;NF=35;NR=9;NS=52;CA=0;DP=297
+1	2214726	.	GC	GCC	100	PASS	AF=0.415474;HP=9;NF=18;NR=19;NS=51;CA=0;DP=416
+1	2220552	rs35472917;-/C,venter	AGG	AG	100	PASS	AF=0.609848;HP=9;DB;NF=24;NR=22;NS=51;CA=0;DP=385
+1	2221276	.	GC	GCC	23	PASS	AF=0.0895016;HP=2;NF=1;NR=11;NS=50;CA=0;DP=396
+1	2222657	.	AC	ACC	16	PASS	AF=0.0530452;HP=2;NF=1;NR=3;NS=51;CA=0;DP=404
+1	2223900	.	CAGGA	CA	100	PASS	AF=0.105506;HP=1;NF=9;NR=6;NS=52;CA=0;DP=517
+1	2232109	.	CAGG	CG	100	PASS	AF=0.220422;HP=1;NF=14;NR=13;NS=51;CA=0;DP=430
+1	2233476	rs34394327;-/CGTTT,mills,venter,watson	CC	CCGTTTC	100	PASS	AF=0.982218;HP=3;DB;NF=18;NR=31;NS=52;CA=0;DP=378
+1	2238242	rs56200665;-/C,mills	GG	GCG	100	PASS	AF=0.745403;HP=4;DB;NF=37;NR=40;NS=51;CA=0;DP=419
+1	2242260	rs34121936;-/C	AGG	AG	100	PASS	AF=0.107749;HP=4;DB;NF=7;NR=6;NS=51;CA=0;DP=427
+1	2246276	rs61120130;-/TGC,venter	GG	GGCTG	100	PASS	AF=0.447977;HP=3;DB;NF=13;NR=17;NS=51;CA=0;DP=403
+1	2246469	.	TT	TTCCCTCCCTTCCTTCCTTCCCTCCCT	100	PASS	AF=0.0710328;HP=3;NF=8;NR=6;NS=51;CA=B;DP=731
+1	2246586	rs59175712;-/CT	CC	CCTC	100	PASS	AF=0.378253;HP=2;DB;NF=33;NR=29;NS=50;CA=0;DP=515
+1	2248450	rs61135926;-/CACA	AA	AACACA	100	PASS	AF=0.367115;HP=3;DB;NF=24;NR=19;NS=51;CA=0;DP=445
+1	2248486	.	CAGA	CA	100	PASS	AF=0.108968;HP=1;NF=14;NR=11;NS=51;CA=M;DP=382
+1	2248806	rs59142249;-/A	CA	CAA	100	PASS	AF=0.0756571;HP=1;DB;NF=4;NR=12;NS=51;CA=0;DP=728
+1	2255198	.	TGCTGGAAAGAACAG	TG	100	PASS	AF=0.115149;HP=1;NF=9;NR=12;NS=51;CA=0;DP=470
+1	2267148	.	ACACACAGA	AA	100	PASS	AF=0.128331;HP=1;NF=4;NR=6;NS=51;CA=0;DP=681
+1	2268675	.	TG	TGG	10	PASS	AF=0.0406249;HP=1;NF=7;NR=3;NS=52;CA=0;DP=508
+1	2269958	.	GCACGCACACGCAC	GC	40	PASS	AF=0.0297002;HP=1;NF=6;NR=7;NS=50;CA=0;DP=288
+1	2270248	.	CCTG	CG	100	PASS	AF=0.21901;HP=4;NF=14;NR=17;NS=52;CA=0;DP=478
+1	2272049	.	AGGGGTGGCACGG	AG	100	PASS	AF=0.0657391;HP=4;NF=20;NR=19;NS=52;CA=0;DP=465
+1	2272576	rs35424701;-/T	TA	TAA	100	PASS	AF=0.0794139;HP=1;DB;NF=5;NR=5;NS=51;CA=0;DP=426
+1	2273487	.	TAA	TA	10	PASS	AF=0.0158231;HP=10;NF=25;NR=9;NS=51;CA=0;DP=564
+1	2282631	rs59328016;-/G	AG	AGG	100	PASS	AF=0.230902;HP=1;DB;NF=1;NR=6;NS=52;CA=M;DP=310
+1	2282847	rs34534255;-/AG	AC	ACTC	100	PASS	AF=0.108076;HP=1;DB;NF=5;NR=4;NS=50;CA=0;DP=293
+1	2284162	.	CA	CAA	12	PASS	AF=0.0508845;HP=10;NF=7;NR=7;NS=52;CA=0;DP=406
+1	2285124	.	TAAAAA	TA	100	PASS	AF=0.226133;HP=8;NF=14;NR=5;NS=52;CA=0;DP=315
+1	2288255	rs56670882;-/TACATAGAAAAA,venter,watson	CAAAATACATAGAA	CA	100	PASS	AF=0.154865;HP=4;DB;NF=46;NR=50;NS=51;CA=0;DP=466
+1	2291012	venter	ATAATT	AT	100	PASS	AF=0.140631;HP=1;NF=7;NR=9;NS=51;CA=0;DP=365
+1	2292525	rs60502597;-/CACAACAAC,venter	CA	CACAACCACAA	100	PASS	AF=0.411828;HP=1;DB;NF=18;NR=3;NS=52;CA=0;DP=515
+1	2305015	rs35699260;-/T,venter	CAG	CG	100	PASS	AF=0.283002;HP=1;DB;NF=14;NR=17;NS=51;CA=0;DP=451
+1	2310430	.	AA	AAAGA	100	PASS	AF=0.382413;HP=6;NF=20;NR=11;NS=52;CA=0;DP=408
+1	2314333	venter	CG	CGGACGCCAGGCAGAGGACTTCATCCCAGGCTTCAGTGCTCCTG	100	PASS	AF=0.736856;HP=2;NF=1;NR=2;NS=52;CA=0;DP=679
+1	2319273	rs57204595;-/C	ACC	AC	100	PASS	AF=0.125223;HP=2;DB;NF=7;NR=13;NS=52;CA=0;DP=523
+1	2322519	.	TCCT	TT	100	PASS	AF=0.200476;HP=2;NF=2;NR=10;NS=50;CA=0;DP=413
+1	2322562	.	TCCACCCTCC	TC	100	PASS	AF=0.3747;HP=2;NF=8;NR=15;NS=51;CA=0;DP=325
+1	2322680	.	CT	CTT	100	PASS	AF=0.284453;HP=1;NF=26;NR=24;NS=52;CA=M;DP=388
+1	2323804	venter	TC	TCC	100	PASS	AF=0.865363;HP=3;NF=38;NR=47;NS=50;CA=0;DP=438
+1	2325452	.	CG	CGG	39	PASS	AF=0.0242463;HP=3;NF=5;NR=8;NS=51;CA=0;DP=547
+1	2332518	.	GA	GAA	100	PASS	AF=0.0862532;HP=1;NF=5;NR=13;NS=51;CA=0;DP=414
+1	2337697	rs55744642;-/CGACA,venter,watson	GG	GGGACAG	100	PASS	AF=0.867582;HP=3;DB;NF=16;NR=23;NS=51;CA=0;DP=383
+1	2338712	rs34210450;-/AGCTTCCC,mills,venter	GC	GCCCAGCTTC	100	PASS	AF=0.431742;HP=3;DB;NF=24;NR=15;NS=52;CA=0;DP=504
+1	2341261	.	TCC	TC	20	PASS	AF=0.13716;HP=9;NF=4;NR=20;NS=51;CA=0;DP=258
+1	2343280	rs60532031;-/AAAAG,watson	GA	GAAGAAA	100	PASS	AF=0.0544808;HP=2;DB;NF=2;NR=10;NS=49;CA=0;DP=348
+1	2343570	venter	AA	AAAACA	100	PASS	AF=0.0882931;HP=6;NF=28;NR=18;NS=52;CA=0;DP=434
+1	2344468	.	TTTTGT	TT	100	PASS	AF=0.233529;HP=7;NF=49;NR=55;NS=52;CA=0;DP=493
+1	2345597	rs35560781;-/T,venter	TAA	TA	100	PASS	AF=0.501718;HP=6;DB;NF=36;NR=26;NS=52;CA=0;DP=532
+1	2352446	.	CGTG	CG	16	PASS	AF=0.0185013;HP=1;NF=10;NR=25;NS=52;CA=0;DP=432
+1	2352629	rs35263617;-/CA,venter	CG	CGTG	100	PASS	AF=0.4693;HP=1;DB;NF=44;NR=38;NS=51;CA=0;DP=539
+1	2355283	rs35314501;-/G	TC	TCC	100	PASS	AF=0.408524;HP=4;DB;NF=21;NR=18;NS=52;CA=0;DP=436
+1	2356275	rs34090130;-/G,mills	AGG	AG	100	PASS	AF=0.172214;HP=6;DB;NF=16;NR=9;NS=51;CA=0;DP=415
+1	2356753	rs58056215;-/TGGAGGC	TGGCTGGAG	TG	100	PASS	AF=0.178356;HP=2;DB;NF=43;NR=59;NS=51;CA=0;DP=429
+1	2357119	.	TGG	TG	100	PASS	AF=0.179635;HP=6;NF=12;NR=18;NS=52;CA=0;DP=495
+1	2357323	.	TCCCT	TT	100	PASS	AF=0.0931072;HP=3;NF=8;NR=9;NS=52;CA=0;DP=484
+1	2357636	.	CTCCACCTTT	CT	100	PASS	AF=0.252701;HP=1;NF=11;NR=9;NS=47;CA=M;DP=266
+1	2358758	.	CAA	CA	26	PASS	AF=0.0241071;HP=3;NF=1;NR=3;NS=51;CA=0;DP=486
+1	2360543	rs34299371;-/G,venter	GCC	GC	100	PASS	AF=0.460241;HP=7;DB;NF=18;NR=28;NS=51;CA=0;DP=403
+1	2365835	rs35499456;-/A	GT	GTT	100	PASS	AF=0.299753;HP=3;DB;NF=19;NR=20;NS=52;CA=0;DP=431
+1	2370798	.	AAACCA	AA	100	PASS	AF=0.315002;HP=4;NF=56;NR=52;NS=52;CA=0;DP=505
+1	2379981	rs35697743;-/C,venter	TGC	TC	100	PASS	AF=0.0396508;HP=1;DB;NF=1;NR=5;NS=50;CA=0;DP=425
+1	2383170	rs35931789;-/T,venter	CC	CAC	100	PASS	AF=0.441832;HP=7;DB;NF=24;NR=21;NS=52;CA=0;DP=453
+1	2383775	.	ACC	AC	19	PASS	AF=0.0298335;HP=5;NF=6;NR=2;NS=52;CA=0;DP=442
+1	2388741	watson	GCCTTCCTCAC	GC	100	PASS	AF=0.134128;HP=2;NF=6;NR=9;NS=47;CA=0;DP=257
+1	2394261	rs34886292;-/T,venter	CA	CAA	100	PASS	AF=0.640008;HP=1;DB;NF=28;NR=33;NS=51;CA=0;DP=459
+1	2395694	venter	AGG	AG	100	PASS	AF=0.518622;HP=3;NF=29;NR=23;NS=50;CA=0;DP=387
+1	2406522	rs35886782;-/CTCTGGACGCT,venter,watson	TG	TGCTCTCTGGACG	100	PASS	AF=0.531691;HP=1;DB;NF=12;NR=19;NS=51;CA=0;DP=452
+1	2429911	rs3831090;-/AT,mills	TT	TTAT	100	PASS	AF=0.138967;HP=3;DB;NF=24;NR=13;NS=52;CA=0;DP=328
+1	2458287	.	CGTG	CG	100	PASS	AF=0.0696687;HP=1;NF=38;NR=32;NS=52;CA=0;DP=613
+1	2458465	.	AGTG	AG	31	PASS	AF=0.0212179;HP=1;NF=18;NR=32;NS=51;CA=0;DP=600
+1	2460527	.	TG	TGCGGCCCATCTCAG	51	PASS	AF=0.164756;HP=1;NF=1;NR=4;NS=51;CA=0;DP=496
+1	2477778	.	AC	ACCC	100	PASS	AF=0.157812;HP=2;NF=2;NR=11;NS=51;CA=0;DP=389
+1	2501833	rs34000217;-/ATT	AA	AAATA	100	PASS	AF=0.437274;HP=5;DB;NF=19;NR=23;NS=51;CA=0;DP=337
+1	2503512	rs59345997;-/CAAA	AAAACA	AA	100	PASS	AF=0.46764;HP=4;DB;NF=44;NR=29;NS=52;CA=0;DP=456
+1	2506681	.	TG	TGGG	46	PASS	AF=0.310909;HP=9;NF=14;NR=8;NS=51;CA=0;DP=273
+1	2513520	rs5772070;-/G,mills	CGG	CG	100	PASS	AF=0.652792;HP=8;DB;NF=8;NR=34;NS=51;CA=0;DP=275
+1	2517761	.	TGC	TC	100	PASS	AF=0.0839269;HP=1;NF=3;NR=6;NS=50;CA=0;DP=359
+1	2520201	rs34705971;-/C,venter	AG	AGG	100	PASS	AF=0.612406;HP=1;DB;NF=42;NR=46;NS=52;CA=0;DP=518
+1	2521983	.	TCAAACAAACAAAC	TC	100	PASS	AF=0.365407;HP=1;NF=35;NR=29;NS=52;CA=0;DP=501
+1	2522019	.	CT	CTGTT	100	PASS	AF=0.523695;HP=1;NF=28;NR=12;NS=52;CA=0;DP=410
+1	2522313	rs34791736;-/A,venter	CT	CTT	100	PASS	AF=0.621139;HP=1;DB;NF=47;NR=24;NS=52;CA=0;DP=472
+1	2524952	rs35090174;-/CT	ACTC	AC	100	PASS	AF=0.224915;HP=1;DB;NF=19;NR=15;NS=51;CA=0;DP=517
+1	2529806	.	CATA	CA	100	PASS	AF=0.236462;HP=1;NF=22;NR=13;NS=51;CA=0;DP=625
+1	2529841	.	CACATA	CA	100	PASS	AF=0.190786;HP=1;NF=20;NR=19;NS=51;CA=0;DP=663
+1	2530205	rs61132608;-/CATATA,watson	CA	CACATATA	100	PASS	AF=0.547698;HP=1;DB;NF=20;NR=28;NS=52;CA=0;DP=660
+1	2543402	rs5772073;-/GAG,mills	TAGGA	TA	100	PASS	AF=0.24689;HP=1;DB;NF=12;NR=31;NS=52;CA=0;DP=543
+1	2547236	rs58240187;-/AGA,venter,watson	GG	GGAAG	100	PASS	AF=0.531939;HP=2;DB;NF=25;NR=25;NS=52;CA=0;DP=444
+1	2551119	rs35955733;-/CCC,venter,watson	GCCCC	GC	100	PASS	AF=0.606107;HP=9;DB;NF=24;NR=35;NS=52;CA=0;DP=492
+1	2551885	rs36036408;-/AC,venter	CGTG	CG	100	PASS	AF=0.356574;HP=1;DB;NF=39;NR=38;NS=52;CA=0;DP=803
+1	2552076	.	CGTG	CG	100	PASS	AF=0.066645;HP=1;NF=25;NR=15;NS=51;CA=0;DP=782
+1	2552384	.	CTGT	CT	12	PASS	AF=0.0121638;HP=1;NF=13;NR=25;NS=52;CA=0;DP=612
+1	2556252	.	ACACTC	AC	59	PASS	AF=0.143579;HP=1;NF=12;NR=9;NS=49;CA=0;DP=331
+1	2578474	.	CCACACCCCCAG	CG	100	PASS	AF=0.930867;HP=3;NF=16;NR=12;NS=51;CA=M;DP=281
+1	2688911	rs34425096;-/TC,venter	TTCT	TT	100	PASS	AF=0.26327;HP=5;DB;NF=17;NR=12;NS=52;CA=0;DP=451
+1	2691366	rs36213670;-/CTCTGGGCCA,mills,venter	GCTCTGGGCCAC	GC	39	PASS	AF=0.191253;HP=1;DB;NF=21;NR=36;NS=52;CA=0;DP=344
+1	2691723	rs57511628;-/ACCCCAGGAGATCCCTGC	TA	TACCCCAGGAGATCCCTGCA	100	PASS	AF=0.332823;HP=1;DB;NF=6;NR=7;NS=52;CA=0;DP=453
+1	2703254	.	CA	CAA	100	PASS	AF=0.111948;HP=3;NF=8;NR=13;NS=51;CA=0;DP=502
+1	2703885	.	AC	ACC	100	PASS	AF=0.0959517;HP=6;NF=24;NR=11;NS=51;CA=0;DP=531
+1	2725125	rs34936518;-/C,venter	GCT	GT	100	PASS	AF=0.375093;HP=1;DB;NF=33;NR=32;NS=52;CA=0;DP=621
+1	2725735	.	AACACA	AA	24	PASS	AF=0.0139746;HP=2;NF=16;NR=4;NS=51;CA=0;DP=639
+1	2726135	rs34620269;-/CA	GCAC	GC	100	PASS	AF=0.0410325;HP=1;DB;NF=28;NR=22;NS=52;CA=0;DP=626
+1	2726213	.	GC	GCAC	13	PASS	AF=0.0257105;HP=1;NF=8;NR=9;NS=52;CA=0;DP=552
+1	2746483	.	AC	ACC	40	PASS	AF=0.0544668;HP=1;NF=4;NR=12;NS=51;CA=0;DP=544
+1	2747281	.	TG	TGAGAG	100	PASS	AF=0.152256;HP=1;NF=11;NR=8;NS=52;CA=0;DP=855
+1	2754002	rs36202379;-/CTGCTTGT,mills,watson	ATTGTCTGCT	AT	100	PASS	AF=0.260861;HP=2;DB;NF=32;NR=35;NS=52;CA=0;DP=496
+1	2755160	rs34916159;-/A	TA	TAA	100	PASS	AF=0.532865;HP=7;DB;NF=10;NR=34;NS=52;CA=0;DP=533
+1	2755983	.	GCC	GC	100	PASS	AF=0.106339;HP=3;NF=18;NR=26;NS=52;CA=M;DP=700
+1	2765711	.	AA	AAGGAAGGA	100	PASS	AF=0.686149;HP=2;NF=11;NR=8;NS=50;CA=0;DP=364
+1	2765863	.	AG	AGG	100	PASS	AF=0.999885;HP=1;NF=14;NR=36;NS=49;CA=0;DP=364
+1	2765952	.	AG	AGG	100	PASS	AF=0.0789769;HP=1;NF=29;NR=29;NS=51;CA=B;DP=851
+1	2779479	.	TTTTCTTCTCTTTCT	TT	100	PASS	AF=0.712577;HP=4;NF=29;NR=22;NS=50;CA=0;DP=322
+1	2794338	rs34131736;-/T	CTG	CG	100	PASS	AF=0.089184;HP=1;DB;NF=7;NR=4;NS=51;CA=0;DP=440
+1	2801123	.	TCCTCCCCACCCTGAC	TC	48	PASS	AF=0.0412327;HP=2;NF=13;NR=18;NS=51;CA=0;DP=343
+1	2803308	watson	CATG	CG	100	PASS	AF=0.160766;HP=1;NF=23;NR=20;NS=52;CA=0;DP=816
+1	2805468	rs56260225;-/ACAA	AAAACA	AA	100	PASS	AF=0.859977;HP=4;DB;NF=62;NR=35;NS=51;CA=0;DP=433
+1	2806441	rs34966309;-/G	CG	CGG	100	PASS	AF=0.211987;HP=4;DB;NF=20;NR=11;NS=52;CA=0;DP=441
+1	2810388	.	GCC	GC	100	PASS	AF=0.11183;HP=2;NF=8;NR=5;NS=51;CA=0;DP=431
+1	2822166	.	TACATGCACACA	TA	100	PASS	AF=0.150719;HP=1;NF=43;NR=52;NS=52;CA=0;DP=844
+1	2822270	rs59677991;-/GC	GGCG	GG	18	NoQCALL	AF=0.0194725;HP=2;DB;NF=15;NR=5;NS=52;CA=0;DP=806
+1	2822473	.	CACACAC	CC	100	PASS	AF=0.138944;HP=1;NF=6;NR=7;NS=52;CA=0;DP=951
+1	2827616	.	CAAGC	CC	52	PASS	AF=0.132317;HP=2;NF=8;NR=4;NS=51;CA=0;DP=300
+1	2828576	.	CG	CTG	100	PASS	AF=0.168378;HP=1;NF=8;NR=2;NS=52;CA=0;DP=325
+1	2829365	rs35758696;-/A	TAA	TA	100	PASS	AF=0.216995;HP=6;DB;NF=20;NR=20;NS=51;CA=0;DP=531
+1	2833106	.	TG	TGTTGGG	100	PASS	AF=0.237115;HP=1;NF=11;NR=4;NS=52;CA=0;DP=336
+1	2834384	.	AC	ACC	32	PASS	AF=0.0617917;HP=1;NF=3;NR=5;NS=52;CA=0;DP=592
+1	2835704	rs35824541;-/G	AGG	AG	100	PASS	AF=0.188967;HP=3;DB;NF=15;NR=11;NS=52;CA=0;DP=691
+1	2836635	rs56691957;-/AT	CATG	CG	100	PASS	AF=0.126742;HP=1;DB;NF=8;NR=13;NS=52;CA=0;DP=611
+1	2851063	.	ATGTGTGTCT	AT	100	PASS	AF=0.224053;HP=1;NF=34;NR=32;NS=52;CA=0;DP=798
+1	2859183	rs34869376;-/CT	ACTC	AC	100	PASS	AF=0.228335;HP=1;DB;NF=11;NR=14;NS=52;CA=0;DP=446
+1	2859269	rs34009406;-/C	AC	ACC	100	PASS	AF=0.168197;HP=2;DB;NF=8;NR=14;NS=52;CA=0;DP=460
+1	2862455	rs34488344;-/T	GT	GTT	100	PASS	AF=0.140555;HP=10;DB;NF=25;NR=16;NS=52;CA=0;DP=484
+1	2866073	.	AC	ACC	56	PASS	AF=0.0758065;HP=1;NF=2;NR=11;NS=51;CA=0;DP=513
+1	2871504	.	TA	TACTAA	100	PASS	AF=0.128765;HP=1;NF=11;NR=12;NS=52;CA=0;DP=676
+1	2871601	rs60410855;-/TCCA	CC	CCCATC	100	PASS	AF=0.11635;HP=3;DB;NF=19;NR=14;NS=52;CA=0;DP=682
+1	2874709	.	GT	GTT	100	PASS	AF=0.138394;HP=9;NF=8;NR=12;NS=51;CA=0;DP=534
+1	2876814	rs5772089;-/A,mills,venter	GG	GAG	100	PASS	AF=0.999994;HP=10;DB;NF=39;NR=42;NS=50;CA=0;DP=343
+1	2877421	rs35085736;-/C,venter	GC	GCC	100	PASS	AF=0.582204;HP=6;DB;NF=29;NR=37;NS=50;CA=0;DP=426
+1	2881114	.	GG	GTG	100	PASS	AF=0.586283;HP=5;NF=16;NR=5;NS=47;CA=M;DP=256
+1	2883970	.	GG	GCG	16	PASS	AF=0.516075;HP=4;NF=6;NR=2;NS=51;CA=M;DP=332
+1	2885504	.	TCC	TC	29	PASS	AF=0.140908;HP=9;NF=12;NR=8;NS=51;CA=0;DP=353
+1	2886983	.	AG	AGG	50	PASS	AF=0.0436199;HP=3;NF=7;NR=2;NS=50;CA=0;DP=401
+1	2887864	rs57379840;-/T,venter	CG	CTG	100	PASS	AF=0.770236;HP=2;DB;NF=41;NR=25;NS=51;CA=0;DP=375
+1	2892284	.	CAT	CT	100	PASS	AF=0.0885935;HP=1;NF=23;NR=17;NS=52;CA=0;DP=685
+1	2892433	venter	AT	ATCCATCCTCCATCCT	100	PASS	AF=0.814532;HP=1;NF=13;NR=12;NS=52;CA=0;DP=620
+1	2892472	.	CCCATC	CC	100	PASS	AF=0.181828;HP=3;NF=50;NR=61;NS=52;CA=0;DP=633
+1	2899352	.	CTA	CA	100	PASS	AF=0.0433393;HP=1;NF=5;NR=2;NS=51;CA=0;DP=512
+1	2902379	.	TAGA	TA	40	PASS	AF=0.0165292;HP=1;NF=3;NR=2;NS=51;CA=0;DP=476
+1	2903930	rs36097640;-/A	TAA	TA	12	PASS	AF=0.0522384;HP=8;DB;NF=13;NR=15;NS=51;CA=0;DP=535
+1	2907194	rs35693840;-/G	AG	AGG	100	PASS	AF=0.136995;HP=5;DB;NF=14;NR=8;NS=52;CA=0;DP=516
+1	2916313	.	AC	ACC	40	PASS	AF=0.0606632;HP=1;NF=1;NR=13;NS=52;CA=0;DP=529
+1	2923107	.	GA	GGGGGGAA	35	PASS	AF=0.311458;HP=1;NF=1;NR=2;NS=50;CA=0;DP=285
+1	2923994	.	AAGGA	AA	100	PASS	AF=0.136914;HP=3;NF=4;NR=16;NS=52;CA=0;DP=475
+1	2926544	rs58065168;-/G	TG	TGG	100	PASS	AF=0.231871;HP=7;DB;NF=23;NR=13;NS=51;CA=0;DP=445
+1	2927774	.	GTCT	GT	100	PASS	AF=0.039848;HP=1;NF=24;NR=39;NS=52;CA=0;DP=466
+1	2928267	rs4013154;-/TCT	CAGAA	CA	100	PASS	AF=0.176094;HP=1;DB;NF=10;GC;NR=20;NS=52;CA=0;DP=390
+1	2931584	.	GTGGTGTTTTCATT	GT	100	PASS	AF=0.171247;HP=1;NF=23;NR=10;NS=52;CA=0;DP=486
+1	2932462	.	GT	GTGAT	56	PASS	AF=0.766604;HP=1;NF=33;NR=13;NS=52;CA=M;DP=790
+1	2932531	.	GT	GTGGTGAT	56	PASS	AF=0.365205;HP=1;NF=19;NR=4;NS=52;CA=M;DP=738
+1	2938240	rs57953122;-/AAGCC	AC	ACCAAGC	100	PASS	AF=0.229942;HP=2;DB;NF=5;NR=7;NS=52;CA=0;DP=387
+1	2939820	rs35035410;-/C,venter	GCC	GC	100	PASS	AF=0.270114;HP=6;DB;NF=15;NR=21;NS=52;CA=0;DP=477
+1	2940602	.	GA	GAA	100	PASS	AF=0.245189;HP=10;NF=31;NR=30;NS=52;CA=0;DP=516
+1	2941986	.	ACCC	AC	100	PASS	AF=0.242307;HP=10;NF=20;NR=20;NS=52;CA=0;DP=471
+1	2943041	rs34450334;-/G,mills	CGG	CG	100	PASS	AF=0.212427;HP=8;DB;NF=13;NR=12;NS=52;CA=0;DP=523
+1	2943605	rs5772091;-/C,mills	GC	GCC	100	PASS	AF=0.155328;HP=1;DB;NF=7;NR=7;NS=52;CA=0;DP=349
+1	2946559	.	TT	TTGT	100	PASS	AF=0.174249;HP=3;NF=13;NR=14;NS=52;CA=0;DP=596
+1	2948391	.	TT	TTTTTCT	100	PASS	AF=0.137955;HP=5;NF=19;NR=16;NS=52;CA=0;DP=557
+1	2949076	rs33910396;-/G,mills	CG	CGG	100	PASS	AF=0.102902;HP=1;DB;NF=3;NR=8;NS=52;CA=0;DP=413
+1	2950056	.	TC	TCAAACAAAC	100	PASS	AF=0.133966;HP=1;NF=9;NR=9;NS=51;CA=0;DP=587
+1	2950689	rs60031908;-/A	CAA	CA	100	PASS	AF=0.200188;HP=8;DB;NF=20;NR=25;NS=51;CA=0;DP=517
+1	2958314	.	CC	CCCATC	100	PASS	AF=0.190271;HP=3;NF=39;NR=18;NS=52;CA=M;DP=454
+1	2961502	rs60708459;-/T	AT	ATT	100	PASS	AF=0.219472;HP=3;DB;NF=14;NR=16;NS=52;CA=0;DP=460
+1	2968615	.	AG	AGG	100	PASS	AF=0.288912;HP=2;NF=11;NR=13;NS=51;CA=0;DP=324
+1	2982005	.	GT	GGGTT	100	PASS	AF=0.189932;HP=5;NF=6;NR=5;NS=52;CA=0;DP=460
+1	2984462	rs34471979;-/C,venter	TCC	TC	100	PASS	AF=0.423837;HP=2;DB;NF=20;NR=27;NS=51;CA=0;DP=459
+1	2985828	rs5772093;-/TTCGGGG,mills,venter,watson	CT	CTTCGGGGT	100	PASS	AF=0.888966;HP=1;DB;NF=22;NR=15;NS=49;CA=0;DP=372
+1	2987353	.	AGTG	AG	39	PASS	AF=0.0534166;HP=1;NF=13;NR=12;NS=51;CA=0;DP=341
+1	2990018	.	TC	TGC	51	PASS	AF=0.347647;HP=1;NF=9;NR=5;NS=52;CA=0;DP=328
+1	2992552	rs55740340;-/TTGT,mills,venter,watson	CT	CTGTTT	100	PASS	AF=0.633228;HP=1;DB;NF=31;NR=31;NS=52;CA=0;DP=471
+1	2994869	.	TT	TTTAT	48	PASS	AF=0.246512;HP=4;NF=8;NR=15;NS=49;CA=0;DP=238
+1	2996339	rs60239912;-/TCATTCAT	CT	CTCATTCATT	100	PASS	AF=0.288255;HP=1;DB;NF=27;NR=24;NS=52;CA=0;DP=550
+1	2996940	.	TG	TGGG	52	PASS	AF=0.252534;HP=1;NF=5;NR=3;NS=51;CA=0;DP=485
+1	2997430	rs58914207;-/TC	TTCT	TT	17	PASS	AF=0.0239916;HP=3;DB;NF=1;NR=3;NS=51;CA=0;DP=533
+1	2998548	rs3067411;-/GC,mills,watson	TT	TGCT	100	PASS	AF=0.513959;HP=2;DB;NF=16;NR=33;NS=51;CA=0;DP=457
+1	2998746	rs33948447;-/CTGAGGGTAT,mills,watson	CCTGAGGGTATC	CC	100	PASS	AF=0.567187;HP=2;DB;NF=32;NR=26;NS=51;CA=0;DP=446
+1	2998922	rs3067390;-/CA,mills,watson	CTGT	CT	100	PASS	AF=0.344398;HP=1;DB;NF=25;NR=25;NS=52;CA=0;DP=544
+1	3001309	.	TCTTCC	TC	100	PASS	AF=0.122521;HP=1;NF=13;NR=16;NS=51;CA=0;DP=463
+1	3003643	rs34727240;-/A	CA	CAA	100	PASS	AF=0.30407;HP=4;DB;NF=23;NR=14;NS=51;CA=0;DP=462
+1	3003980	.	ATTCT	AT	100	PASS	AF=0.0770408;HP=2;NF=12;NR=8;NS=51;CA=0;DP=436
+1	3015507	rs36215320;-/AATAAT,mills	AAATAATA	AA	100	PASS	AF=0.341849;HP=4;DB;NF=19;NR=21;NS=52;CA=M;DP=287
+1	3020627	.	GC	GCGCGCAC	45	PASS	AF=0.0864166;HP=1;NF=3;NR=4;NS=52;CA=0;DP=675
+1	3020729	.	GCAC	GC	100	PASS	AF=0.270815;HP=1;NF=26;NR=22;NS=52;CA=0;DP=511
+1	3020780	.	GCAC	GC	100	PASS	AF=0.0529136;HP=1;NF=14;NR=13;NS=52;CA=0;DP=580
+1	3020851	rs36140038;-/G,venter	CC	CGC	100	PASS	AF=0.0570603;HP=2;DB;NF=7;NR=8;NS=52;CA=0;DP=580
+1	3020930	.	GCAC	GC	100	PASS	AF=0.0608239;HP=1;NF=21;NR=20;NS=52;CA=0;DP=662
+1	3020996	.	ACT	AT	100	PASS	AF=0.0376658;HP=1;NF=4;NR=2;NS=52;CA=0;DP=646
+1	3021049	rs58793198;-/CA	AA	AACA	100	PASS	AF=0.0822964;HP=2;DB;NF=19;NR=18;NS=52;CA=0;DP=756
+1	3024532	.	TGTGTGCG	TG	100	PASS	AF=0.0453628;HP=1;NF=12;NR=35;NS=51;CA=0;DP=585
+1	3035092	venter,watson	CTCCCACCATGCTACTGGAGACCAT	CT	100	PASS	AF=0.175148;HP=1;NF=41;NR=54;NS=51;CA=0;DP=464
+1	3035605	rs56967751;-/TG,venter,watson	AG	AGTG	100	PASS	AF=0.387697;HP=1;DB;NF=30;NR=25;NS=51;CA=0;DP=671
+1	3035812	.	CGTG	CG	100	PASS	AF=0.051827;HP=1;NF=28;NR=20;NS=51;CA=0;DP=643
+1	3035887	.	ATGT	AT	50	PASS	AF=0.0421027;HP=1;NF=24;NR=34;NS=52;CA=0;DP=556
+1	3036291	rs36033160;-/CCG	CT	CCCGT	100	PASS	AF=0.0605711;HP=1;DB;NF=3;NR=5;NS=51;CA=0;DP=428
+1	3037949	rs34840011;-/A,venter	TA	TAA	100	PASS	AF=0.096326;HP=8;DB;NF=5;NR=6;NS=52;CA=0;DP=462
+1	3046082	rs35271327;-/T	AT	ATT	19	PASS	AF=0.0473995;HP=7;DB;NF=9;NR=8;NS=52;CA=0;DP=430
+1	3049499	.	ACC	AC	27	PASS	AF=0.0269129;HP=3;NF=3;NR=1;NS=51;CA=0;DP=373
+1	3053337	.	TGG	TG	100	PASS	AF=0.205181;HP=7;NF=15;NR=19;NS=52;CA=0;DP=424
+1	3058772	.	TCATCC	TC	100	PASS	AF=0.716787;HP=1;NF=61;NR=51;NS=52;CA=0;DP=435
+1	3069377	.	CATGGT	CT	100	PASS	AF=0.42044;HP=1;NF=3;NR=14;NS=48;CA=M;DP=257
+1	3076481	rs35945121;-/T,mills	ATT	AT	100	PASS	AF=0.33892;HP=10;DB;NF=9;NR=38;NS=52;CA=0;DP=438
+1	3079028	.	TA	TCA	100	PASS	AF=0.0528803;HP=1;NF=5;NR=3;NS=51;CA=0;DP=475
+1	3084256	watson	AGTTTAGATACTG	AG	100	PASS	AF=0.123981;HP=1;NF=18;NR=14;NS=52;CA=0;DP=554
+1	3087172	rs34468831;-/A	GAA	GA	100	PASS	AF=0.0618762;HP=3;DB;NF=2;NR=5;NS=50;CA=0;DP=475
+1	3087517	.	CACACGCAGTCTTA	CA	100	PASS	AF=0.637316;HP=1;NF=41;NR=37;NS=52;CA=0;DP=973
+1	3087777	.	TA	TACA	100	PASS	AF=0.377666;HP=1;NF=43;NR=55;NS=52;CA=M;DP=966
+1	3087871	.	CACGGTCTTA	CA	100	PASS	AF=0.589214;HP=1;NF=16;NR=14;NS=51;CA=0;DP=710
+1	3087938	.	AG	AGTCTTACACAAGCGG	100	PASS	AF=0.469462;HP=1;NF=28;NR=29;NS=52;CA=M;DP=816
+1	3088154	.	GG	GCAG	100	PASS	AF=0.0511127;HP=2;NF=11;NR=10;NS=52;CA=M;DP=894
+1	3088232	rs35125658;-/TT	GG	GCAG	100	PASS	AF=0.0967781;HP=2;DB;NF=3;NR=24;NS=51;CA=M;DP=938
+1	3088301	.	CT	CTTGCACACGCAGTTT	47	PASS	AF=0.0188781;HP=2;NF=5;NR=2;NS=51;CA=M;DP=684
+1	3105704	rs35372326;-/G,mills	CGG	CG	100	PASS	AF=0.0956114;HP=2;DB;NF=6;NR=4;NS=52;CA=0;DP=378
+1	3107408	rs5772098;-/G,mills	AG	AGG	100	PASS	AF=0.107417;HP=5;DB;NF=19;NR=15;NS=52;CA=0;DP=504
+1	3107714	rs34461209;-/G,venter	TG	TGG	100	PASS	AF=0.61875;HP=3;DB;NF=21;NR=28;NS=52;CA=0;DP=454
+1	3108534	rs59512254;-/GA	GGAG	GG	100	PASS	AF=0.184609;HP=2;DB;NF=17;NR=11;NS=52;CA=0;DP=510
+1	3121064	.	TG	TGAG	59	PASS	AF=0.0221492;HP=1;NF=7;NR=3;NS=52;CA=0;DP=555
+1	3131583	rs57750843;-/A	GAA	GA	100	PASS	AF=0.166149;HP=9;DB;NF=21;NR=20;NS=52;CA=0;DP=490
+1	3131742	.	GT	GGGGGGGGGTT	27	PASS	AF=0.243052;HP=3;NF=2;NR=1;NS=49;CA=0;DP=394
+1	3135855	rs34340862;-/TAA,mills	CT	CTAAT	100	PASS	AF=0.183257;HP=1;DB;NF=11;NR=9;NS=51;CA=0;DP=520
+1	3146366	.	GGAG	GG	100	PASS	AF=0.040688;HP=4;NF=13;NR=14;NS=51;CA=0;DP=434
+1	3152159	.	AT	ATT	100	PASS	AF=0.0396994;HP=4;NF=8;NR=9;NS=52;CA=0;DP=489
+1	3157729	venter,watson	AG	AGGGGTGAGGTG	100	PASS	AF=0.830079;HP=4;NF=30;NR=23;NS=51;CA=0;DP=548
+1	3158807	.	AGG	AG	100	PASS	AF=0.705976;HP=6;NF=35;NR=30;NS=52;CA=0;DP=371
+1	3158885	.	CATG	CG	100	PASS	AF=0.09216;HP=1;NF=6;NR=6;NS=51;CA=0;DP=375
+1	3163280	.	CAAAATA	CA	100	PASS	AF=0.148526;HP=4;NF=13;NR=1;NS=49;CA=M;DP=326
+1	3164018	rs5772100;-/A,mills,venter	TAA	TA	100	PASS	AF=0.999998;HP=3;DB;NF=67;NR=69;NS=52;CA=0;DP=511
+1	3174387	.	CAGG	CG	17	PASS	AF=0.0141709;HP=1;NF=1;NR=2;NS=51;CA=0;DP=428
+1	3176024	.	GACAGTCCCAGAGGAGCA	GA	44	PASS	AF=0.0444872;HP=1;NF=3;NR=10;NS=52;CA=M;DP=480
+1	3177102	.	AG	AGAGGAGGACAGTCGGGGAGGACAGTCCCGG	100	PASS	AF=0.346135;HP=1;NF=8;NR=13;NS=52;CA=0;DP=550
+1	3179862	rs35987870;-/GTGG	ATGTGT	AT	100	PASS	AF=0.0762534;HP=1;DB;NF=17;NR=17;NS=51;CA=0;DP=618
+1	3183094	rs33953525;-/GGTGCCGTGAACAGAGCCAGCGAGG,mills	AG	AGGTGCCGTGAACAGAGCCAGCGAGGG	100	PASS	AF=0.665581;HP=2;DB;NF=15;NR=15;NS=52;CA=0;DP=424
+1	3183166	rs35451643;-/C,venter	TCC	TC	100	PASS	AF=0.123295;HP=4;DB;NF=12;NR=6;NS=52;CA=0;DP=460
+1	3184208	rs59663829;-/GCACACACAA	TA	TGCACACACAAA	100	PASS	AF=0.152939;HP=1;DB;NF=4;NR=4;NS=52;CA=0;DP=733
+1	3186299	.	ACC	AC	100	PASS	AF=0.951135;HP=8;NF=16;NR=14;NS=51;CA=0;DP=311
+1	3202609	.	TG	TGGGGGGG	11	PASS	AF=0.122471;HP=1;NF=3;NR=3;NS=52;CA=0;DP=479
+1	3292566	.	TC	TCGGGGTGCCC	12	PASS	AF=0.209628;HP=1;NF=22;NR=17;NS=51;CA=0;DP=462
+1	3292669	.	AAGA	AA	100	PASS	AF=0.312194;HP=8;NF=13;NR=14;NS=51;CA=0;DP=483
+1	3293018	rs35846516;-/A,venter	GAA	GA	100	PASS	AF=0.791047;HP=9;DB;NF=59;NR=44;NS=51;CA=0;DP=507
+1	3293422	rs34150215;-/A,mills,venter	TA	TAA	100	PASS	AF=0.418316;HP=7;DB;NF=27;NR=18;NS=52;CA=0;DP=481
+1	3307979	rs35082175;-/A,venter	CAT	CT	100	PASS	AF=0.379363;HP=1;DB;NF=36;NR=25;NS=52;CA=0;DP=659
+1	3308056	.	CATA	CA	100	PASS	AF=0.0313721;HP=1;NF=4;NR=5;NS=52;CA=0;DP=699
+1	3308306	rs34659426;-/AA	CAAA	CA	100	PASS	AF=0.238591;HP=3;DB;NF=23;NR=22;NS=52;CA=0;DP=732
+1	3308692	.	GC	GCC	100	PASS	AF=0.610676;HP=6;NF=23;NR=26;NS=52;CA=0;DP=447
+1	3309461	.	ACCCTCCTCTGAGTCTTCCTCCCCTTCCCGTGC	AC	100	PASS	AF=0.218197;HP=3;NF=28;NR=41;NS=51;CA=0;DP=430
+1	3313004	.	ATT	AT	18	PASS	AF=0.117282;HP=10;NF=22;NR=12;NS=51;CA=0;DP=407
+1	3315219	rs35154920;-/GT	CG	CGTG	100	PASS	AF=0.407055;HP=1;DB;NF=23;NR=17;NS=52;CA=0;DP=498
+1	3315279	rs34306698;-/AT	CG	CATG	100	PASS	AF=0.27165;HP=1;DB;NF=18;NR=10;NS=51;CA=0;DP=460
+1	3315552	rs61650876;-/ATGT	CATGTG	CG	100	PASS	AF=0.074251;HP=1;DB;NF=10;NR=7;NS=52;CA=0;DP=612
+1	3315608	.	CGTG	CG	44	PASS	AF=0.0200264;HP=1;NF=15;NR=25;NS=52;CA=0;DP=622
+1	3316180	rs34769314;-/GTGA	TGTGAG	TG	100	PASS	AF=0.13026;HP=1;DB;NF=29;NR=21;NS=52;CA=0;DP=930
+1	3316258	rs57503175;-/TGTATGTGCGTGTGTGTGGTGTG	GG	GGTGTGTGGTGTGTGTATGTGCGTG	100	PASS	AF=0.277124;HP=3;DB;NF=3;NR=11;NS=52;CA=0;DP=898
+1	3316338	rs34133894;-/GT	GGTG	GG	100	PASS	AF=0.121606;HP=2;DB;NF=18;NR=27;NS=52;CA=0;DP=901
+1	3316408	.	TGG	TG	100	PASS	AF=0.153074;HP=7;NF=23;NR=10;NS=52;CA=0;DP=898
+1	3316476	rs60842130;-/GTG	TGTGG	TG	43	PASS	AF=0.0151943;HP=1;DB;NF=4;NR=1;NS=52;CA=0;DP=732
+1	3317481	rs34240659;-/AT	CATA	CA	100	PASS	AF=0.127605;HP=1;DB;NF=14;NR=8;NS=52;CA=0;DP=538
+1	3319964	.	ACC	AC	100	PASS	AF=0.0511239;HP=5;NF=12;NR=4;NS=52;CA=0;DP=505
+1	3327173	rs56093721;-/A,venter	TAA	TA	100	PASS	AF=0.89527;HP=9;DB;NF=37;NR=68;NS=52;CA=0;DP=540
+1	3328302	.	AG	AGGGGGG	53	PASS	AF=0.124625;HP=2;NF=13;NR=2;NS=52;CA=0;DP=585
+1	3335208	.	CGG	CG	100	PASS	AF=0.0438559;HP=2;NF=3;NR=3;NS=52;CA=0;DP=448
+1	3335551	rs34869178;-/T	CTC	CC	100	PASS	AF=0.0947355;HP=1;DB;NF=4;NR=8;NS=52;CA=0;DP=487
+1	3342021	rs34485545;-/A	TA	TAA	100	PASS	AF=0.154806;HP=9;DB;NF=25;NR=23;NS=52;CA=0;DP=444
+1	3347098	venter	CG	CAG	100	PASS	AF=0.931731;HP=1;NF=49;NR=54;NS=52;CA=0;DP=497
+1	3348129	rs55866341;-/G,venter	CG	CGG	100	PASS	AF=0.883294;HP=1;DB;NF=55;NR=55;NS=52;CA=0;DP=521
+1	3352897	.	AA	ACA	46	PASS	AF=0.0385898;HP=6;NF=2;NR=6;NS=51;CA=0;DP=407
+1	3353821	rs34792713;-/T	AT	ATT	36	PASS	AF=0.0290672;HP=1;DB;NF=3;NR=3;NS=52;CA=0;DP=428
+1	3356271	.	TTCCT	TT	15	PASS	AF=0.00990969;HP=3;NF=1;NR=1;NS=52;CA=0;DP=537
+1	3356391	rs4018597;-/TA	TT	TTAT	100	PASS	AF=0.0517593;HP=2;DB;NF=13;NR=11;NS=52;CA=0;DP=475
+1	3356436	rs5772104;-/GT	CGTG	CG	100	PASS	AF=0.82813;HP=1;DB;NF=59;NR=53;NS=51;CA=0;DP=449
+1	3356871	.	CATG	CG	26	PASS	AF=0.0193592;HP=1;NF=1;NR=3;NS=51;CA=0;DP=430
+1	3359412	rs34037774;-/G,venter	TGG	TG	59	PASS	AF=0.0301496;HP=2;DB;NF=4;NR=5;NS=52;CA=0;DP=451
+1	3370575	rs35597752;-/TG,venter,watson	CTGT	CT	100	PASS	AF=0.760154;HP=1;DB;NF=43;NR=36;NS=52;CA=0;DP=405
+1	3372018	rs34109718;-/G,venter	CGG	CG	100	PASS	AF=0.891318;HP=3;DB;NF=46;NR=36;NS=51;CA=0;DP=349
+1	3383745	rs57207202;-/C	AC	ACC	100	PASS	AF=0.182529;HP=4;DB;NF=9;NR=7;NS=47;CA=D;DP=229
+1	3384084	rs5772105;-/G,mills,venter	CG	CGG	100	PASS	AF=0.937697;HP=2;DB;NF=49;NR=47;NS=50;CA=0;DP=457
+1	3385833	rs5772106;-/CC,mills,venter,watson	ACCC	AC	100	PASS	AF=0.778535;HP=5;DB;NF=33;NR=14;NS=51;CA=0;DP=418
+1	3387275	rs56102150;-/TC,venter	CC	CCTC	100	PASS	AF=0.999995;HP=4;DB;NF=16;NR=36;NS=50;CA=0;DP=364
+1	3388739	rs58188396;-/GGGGGGCGGGTAGCC	GG	GGGGGGGCGGGTAGCCG	40	PASS	AF=0.263678;HP=7;DB;NF=3;NR=2;NS=48;CA=0;DP=326
+1	3393157	.	AAAAAATA	AA	100	PASS	AF=0.0549314;HP=6;NF=23;NR=18;NS=51;CA=0;DP=468
+1	3393524	.	GGTGTG	GG	23	PASS	AF=0.017751;HP=2;NF=1;NR=19;NS=49;CA=0;DP=266
+1	3409800	.	AAGA	AA	100	PASS	AF=0.0431791;HP=3;NF=1;NR=8;NS=51;CA=0;DP=643
+1	3410131	rs58666986;-/GTGT	ATGTGT	AT	100	PASS	AF=0.0433727;HP=1;DB;NF=7;NR=13;NS=52;CA=0;DP=603
+1	3411485	rs60864742;-/ACACCGGTAGCAAGGCA,mills	ACACCGGTAGCAAGGCACC	AC	100	PASS	AF=0.0858716;HP=1;DB;NF=8;NR=17;NS=52;CA=0;DP=523
+1	3417374	.	GCACACGCCCCCACCC	GC	20	PASS	AF=0.0294079;HP=1;NF=4;NR=3;NS=50;CA=0;DP=447
+1	3429498	rs56204236;-/G	CG	CGG	100	PASS	AF=0.596026;HP=10;DB;NF=6;NR=7;NS=51;CA=0;DP=322
+1	3435396	.	CACAGA	CA	100	PASS	AF=0.0433621;HP=1;NF=2;NR=6;NS=52;CA=0;DP=457
+1	3442767	rs36106109;-/G	CG	CGG	100	PASS	AF=0.112939;HP=5;DB;NF=5;NR=6;NS=50;CA=0;DP=369
+1	3451064	rs36030995;-/C	GC	GCC	100	PASS	AF=0.385449;HP=5;DB;NF=22;NR=12;NS=50;CA=0;DP=388
+1	3456931	rs35289361;-/G	AG	AGG	100	PASS	AF=0.0676076;HP=4;DB;NF=11;NR=9;NS=52;CA=0;DP=554
+1	3467274	watson	GGGCTG	GG	100	PASS	AF=0.132596;HP=3;NF=16;NR=12;NS=51;CA=0;DP=428
+1	3475422	rs61428836;-/G	TG	TGG	100	PASS	AF=0.0480433;HP=3;DB;NF=6;NR=10;NS=52;CA=0;DP=468
+1	3482055	.	CA	CGTCTTATA	100	PASS	AF=0.593516;HP=1;NF=10;NR=11;NS=49;CA=M;DP=256
+1	3482413	mills,watson	TCTCC	TC	100	PASS	AF=0.414589;HP=1;NF=24;NR=32;NS=51;CA=0;DP=496
+1	3485140	venter,watson	CCAAC	CC	100	PASS	AF=0.714294;HP=2;NF=21;NR=32;NS=52;CA=0;DP=460
+1	3486991	rs35452084;-/G,venter	AGG	AG	100	PASS	AF=0.744909;HP=4;DB;NF=15;NR=35;NS=50;CA=0;DP=363
+1	3492812	.	CGTG	CG	14	PASS	AF=0.0148914;HP=1;NF=22;NR=26;NS=51;CA=0;DP=585
+1	3494290	.	AC	ACAGGACCGGCC	100	PASS	AF=0.117184;HP=1;NF=2;NR=22;NS=52;CA=0;DP=464
+1	3496820	rs34860893;-/C,mills,venter	ACC	AC	100	PASS	AF=0.924032;HP=7;DB;NF=33;NR=48;NS=52;CA=0;DP=386
+1	3504928	rs36094767;-/C,venter	TC	TCC	100	PASS	AF=0.786142;HP=4;DB;NF=23;NR=43;NS=51;CA=0;DP=405
+1	3511572	rs3072238;-/TCAC,venter	ACACTC	AC	100	PASS	AF=0.160871;HP=1;DB;NF=22;NR=22;NS=52;CA=0;DP=824
+1	3511789	rs59801836;-/CTCA,watson	ACACTC	AC	100	PASS	AF=0.620819;HP=1;DB;NF=54;NR=52;NS=52;CA=0;DP=740
+1	3511919	.	TACA	TA	100	PASS	AF=0.049568;HP=1;NF=20;NR=22;NS=52;CA=0;DP=729
+1	3511980	rs57128321;-/ACTC,venter,watson	AC	ACACTC	100	PASS	AF=0.937206;HP=1;DB;NF=63;NR=38;NS=52;CA=0;DP=712
+1	3512089	rs61705210;-/TCACAC,venter,watson	AACTCACA	AA	100	PASS	AF=0.658764;HP=3;DB;NF=65;NR=52;NS=52;CA=0;DP=808
+1	3516936	rs60239345;-/CA,venter	CG	CCAG	100	PASS	AF=0.999997;HP=1;DB;NF=52;NR=26;NS=52;CA=0;DP=391
+1	3519155	rs35740208;-/G,venter	AGG	AG	100	PASS	AF=0.108418;HP=3;DB;NF=7;NR=11;NS=51;CA=0;DP=505
+1	3523781	rs56339243;-/GGCTCC,venter,watson	AC	ACCGGCTC	100	PASS	AF=0.603986;HP=3;DB;NF=20;NR=23;NS=52;CA=0;DP=449
+1	3526023	.	GGCACTTCCCGCCCCCGTCACCCCTGCCGCCATG	GG	100	PASS	AF=0.227609;HP=2;NF=10;NR=15;NS=52;CA=0;DP=454
+1	3526486	rs35020651;-/C,venter	TC	TCC	100	PASS	AF=0.389171;HP=3;DB;NF=32;NR=20;NS=52;CA=0;DP=470
+1	3530060	.	TGG	TG	100	PASS	AF=0.033793;HP=3;NF=6;NR=1;NS=52;CA=0;DP=540
+1	3531966	rs3838971;-/C	TG	TGG	100	PASS	AF=0.155382;HP=6;DB;NF=14;NR=11;NS=49;CA=0;DP=292
+1	3534095	rs35816205;-/A,mills,venter	TAA	TA	100	PASS	AF=0.160054;HP=3;DB;NF=9;NR=10;NS=52;CA=0;DP=455
+1	3535035	rs58849058;-/TCTGGGAGCTCCTCCCCCT,venter,watson	GTTCTGGGAGCTCCTCCCCCT	GT	100	PASS	AF=0.609724;HP=2;DB;NF=50;NR=48;NS=52;CA=0;DP=487
+1	3535985	.	CCAAAC	CC	100	PASS	AF=0.116123;HP=2;NF=10;NR=13;NS=51;CA=0;DP=553
+1	3536124	rs55905548;-/GGCG,venter,watson	CCGGGC	CC	100	PASS	AF=0.45742;HP=3;DB;NF=28;NR=31;NS=51;CA=0;DP=499
+1	3543853	.	TC	TCC	100	PASS	AF=0.156605;HP=6;NF=12;NR=13;NS=52;CA=0;DP=527
+1	3549495	.	AC	ACCCCC	34	PASS	AF=0.0959154;HP=1;NF=1;NR=3;NS=52;CA=0;DP=496
+1	3553372	rs34514629;-/C,venter	GCA	GA	100	PASS	AF=0.652107;HP=1;DB;NF=45;NR=47;NS=52;CA=0;DP=551
+1	3556485	rs3831025;-/CAGCCTGC,venter,watson	AGCAGGCTGC	AC	100	PASS	AF=0.38103;HP=1;DB;NF=13;NR=9;NS=49;CA=0;DP=292
+1	3556883	.	CA	CATA	14	PASS	AF=0.0221011;HP=1;NF=9;NR=13;NS=50;CA=0;DP=436
+1	3563429	.	CG	CGGGGG	56	PASS	AF=0.17049;HP=2;NF=3;NR=7;NS=52;CA=0;DP=586
+1	3564334	rs3034639;-/GT,mills	GA	GACA	100	PASS	AF=0.227635;HP=1;DB;NF=10;NR=13;NS=50;CA=0;DP=364
+1	3564964	rs5772113;-/G	TGG	TG	100	PASS	AF=0.220888;HP=2;DB;NF=11;NR=18;NS=50;CA=0;DP=408
+1	3565238	venter	GGTCTCCTACAGTCATATTTTGGGGTGACGTATTCTAG	GG	100	PASS	AF=0.145422;HP=2;NF=1;NR=10;NS=52;CA=M;DP=323
+1	3566253	rs57149403;-/GTCCAGC	AC	ACGTCCAGC	100	PASS	AF=0.0476733;HP=1;DB;NF=3;NR=3;NS=52;CA=0;DP=363
+1	3567114	.	ATG	AG	100	PASS	AF=0.0358982;HP=1;NF=3;NR=5;NS=52;CA=0;DP=555
+1	3568146	rs3034606;-/TA	GTAT	GT	100	PASS	AF=0.533957;HP=1;DB;NF=12;NR=29;NS=51;CA=0;DP=247
+1	3570893	rs34305694;-/C	TCC	TC	100	PASS	AF=0.0467251;HP=2;DB;NF=5;NR=3;NS=52;CA=0;DP=443
+1	3574939	.	CG	CGTGTGTG	23	PASS	AF=0.401022;HP=1;NF=46;NR=32;NS=52;CA=0;DP=481
+1	3586002	.	ACTC	AC	100	PASS	AF=0.157197;HP=1;NF=17;NR=24;NS=52;CA=0;DP=691
+1	3586231	rs61542341;-/GTCTCT	CTCTCTGT	CT	12	PASS	AF=0.0310208;HP=1;DB;NF=1;NR=11;NS=52;CA=M;DP=400
+1	3586281	.	CTTT	CT	21	PASS	AF=0.115475;HP=3;NF=1;NR=3;NS=51;CA=M;DP=469
+1	3589610	rs57492244;-/G	TGG	TG	100	PASS	AF=0.0691843;HP=7;DB;NF=11;NR=8;NS=51;CA=0;DP=527
+1	3593995	rs57765962;-/AT,watson	AATG	AG	100	PASS	AF=0.127015;HP=2;DB;NF=10;NR=8;NS=52;CA=0;DP=423
+1	3603570	.	GCGGGGCCCACCTCGCACCCGCGGCCCACGTCGCACCC	GC	100	PASS	AF=0.0758905;HP=1;NF=8;NR=12;NS=51;CA=0;DP=414
+1	3606881	rs5772119;-/A,venter	TAG	TG	100	PASS	AF=0.333638;HP=1;DB;NF=12;NR=36;NS=51;CA=0;DP=522
+1	3618309	rs3841787;-/TG,watson	CATG	CG	100	PASS	AF=0.219932;HP=1;DB;NF=14;NR=14;NS=50;CA=0;DP=449
+1	3619353	venter	GCCCCTGCC	GC	100	PASS	AF=0.290838;HP=4;NF=18;NR=8;NS=51;CA=0;DP=322
+1	3629994	rs35939665;-/CTGC,mills,venter,watson	TCTGCC	TC	100	PASS	AF=0.953969;HP=1;DB;NF=43;NR=31;NS=51;CA=0;DP=364
+1	3630547	rs35380007;-/A,venter	TA	TAA	100	PASS	AF=0.373122;HP=2;DB;NF=20;NR=12;NS=51;CA=0;DP=293
+1	3632819	rs61728692;-/CGGA	GT	GCGGAT	100	PASS	AF=0.63605;HP=1;DB;NF=18;NR=3;NS=48;CA=0;DP=238
+1	3632891	.	GGATTG	GG	46	PASS	AF=0.024415;HP=2;NF=4;NR=2;NS=49;CA=0;DP=381
+1	3633325	.	CG	CGATGGATGGGTGG	100	PASS	AF=0.870192;HP=1;NF=3;NR=4;NS=52;CA=0;DP=751
+1	3635416	rs3034587;-/CTCTCT,mills,venter	AA	AAGAGAGA	100	PASS	AF=0.707697;HP=3;DB;NF=37;NR=27;NS=52;CA=0;DP=538
+1	3643833	.	AC	ACCC	25	PASS	AF=0.0664372;HP=1;NF=3;NR=3;NS=51;CA=0;DP=511
+1	3648954	rs3216059;-/G	AG	AGG	100	PASS	AF=0.42719;HP=4;DB;NF=35;NR=35;NS=51;CA=0;DP=551
+1	3660684	.	GA	GCA	100	PASS	AF=0.136632;HP=1;NF=2;NR=10;NS=49;CA=0;DP=480
+1	3663009	rs35440871;-/AA	CAAG	CG	100	PASS	AF=0.2595;HP=2;DB;NF=19;NR=14;NS=51;CA=0;DP=498
+1	3665663	rs60798590;-/TATTTAAAAAT,watson	CA	CAATTATTTAAAA	33	PASS	AF=0.0338921;HP=2;DB;NF=8;NR=3;NS=51;CA=0;DP=388
+1	3665995	.	TTTGAAACT	TT	33	PASS	AF=0.00986571;HP=4;NF=1;NR=3;NS=52;CA=0;DP=507
+1	3668078	.	AGG	AG	100	PASS	AF=0.341281;HP=8;NF=21;NR=29;NS=52;CA=0;DP=467
+1	3677245	rs36002367;-/AG	AAGA	AA	100	PASS	AF=0.137474;HP=3;DB;NF=6;NR=10;NS=52;CA=0;DP=521
+1	3680208	.	TG	TGG	10	PASS	AF=0.0239017;HP=1;NF=7;NR=5;NS=51;CA=0;DP=448
+1	3681294	venter	CC	CGCAC	100	PASS	AF=0.200075;HP=8;NF=7;NR=2;NS=50;CA=0;DP=245
+1	3682989	rs35616712;-/C	TCC	TC	100	PASS	AF=0.0813904;HP=3;DB;NF=9;NR=3;NS=51;CA=0;DP=447
+1	3684305	venter	CG	CGG	100	PASS	AF=0.0596707;HP=3;NF=4;NR=6;NS=51;CA=0;DP=416
+1	3686623	rs35661250;-/AG	CA	CAGA	100	PASS	AF=0.0609898;HP=1;DB;NF=5;NR=6;NS=52;CA=0;DP=626
+1	3691009	rs35756038;-/A,venter	CAA	CA	100	PASS	AF=0.444393;HP=2;DB;NF=24;NR=32;NS=52;CA=0;DP=562
+1	3696676	.	CCTG	CG	100	PASS	AF=0.102585;HP=4;NF=7;NR=6;NS=52;CA=0;DP=502
+1	3697316	rs34679063;-/C,venter	GC	GCC	100	PASS	AF=0.8246;HP=1;DB;NF=51;NR=32;NS=52;CA=0;DP=438
+1	3704105	.	TT	TTAATTTTTATATTAACCGTGTTAATAT	100	PASS	AF=0.377269;HP=2;NF=17;NR=26;NS=52;CA=0;DP=476
+1	3708451	watson	TG	TGGAGG	43	PASS	AF=0.0406373;HP=2;NF=3;NR=4;NS=52;CA=0;DP=587
+1	3710853	rs35447451;-/G,venter	AG	AGG	100	PASS	AF=0.272856;HP=4;DB;NF=25;NR=31;NS=52;CA=0;DP=507
+1	3711553	rs36007194;-/T	AT	ATT	100	PASS	AF=0.093968;HP=10;DB;NF=11;NR=13;NS=52;CA=0;DP=515
+1	3712668	rs35364504;-/GA,venter	GGAG	GG	100	PASS	AF=0.369523;HP=5;DB;NF=18;NR=34;NS=51;CA=0;DP=320
+1	3713867	venter	TTTTATTTAT	TT	100	PASS	AF=0.301438;HP=5;NF=21;NR=36;NS=49;CA=0;DP=294
+1	3714365	rs58666367;-/CTCAT,venter,watson	GA	GATCTCA	100	PASS	AF=0.431722;HP=1;DB;NF=24;NR=17;NS=52;CA=0;DP=484
+1	3721514	rs3838969;-/A,venter	CG	CTG	100	PASS	AF=0.472733;HP=2;DB;NF=27;NR=26;NS=52;CA=0;DP=461
+1	3726918	rs34085838;-/G	CG	CGG	100	PASS	AF=0.242958;HP=1;DB;NF=17;NR=14;NS=52;CA=0;DP=479
+1	3728638	rs61301856;-/GA,venter,watson	TGAG	TG	100	PASS	AF=0.446341;HP=1;DB;NF=54;NR=33;NS=52;CA=0;DP=666
+1	3729131	rs56900717;-/A	TT	TAT	100	PASS	AF=0.489357;HP=2;DB;NF=33;NR=22;NS=52;CA=0;DP=466
+1	3733293	rs5772126;-/G,venter	TG	TGG	100	PASS	AF=0.701257;HP=2;DB;NF=17;NR=26;NS=51;CA=0;DP=451
+1	3733413	.	CA	CAA	100	PASS	AF=0.107016;HP=5;NF=12;NR=16;NS=52;CA=0;DP=523
+1	3735276	venter	TA	TAAA	100	PASS	AF=0.491527;HP=1;NF=29;NR=33;NS=52;CA=0;DP=477
+1	3737219	rs61056063;-/A	AGA	AA	11	PASS	AF=0.205567;HP=1;DB;NF=13;NR=6;NS=51;CA=0;DP=431
+1	3740075	rs35801288;-/C	ACA	AA	100	PASS	AF=0.438207;HP=1;DB;NF=35;NR=12;NS=52;CA=0;DP=395
+1	3741588	rs34966926;-/T,venter	GT	GTT	100	PASS	AF=0.212825;HP=10;DB;NF=21;NR=22;NS=51;CA=0;DP=541
+1	3748510	mills	TTTTTTAT	TT	53	PASS	AF=0.0323102;HP=7;NF=21;NR=15;NS=51;CA=0;DP=420
+1	3759325	.	CG	CGGCCAAGGAG	100	PASS	AF=0.391954;HP=2;NF=19;NR=18;NS=52;CA=0;DP=465
+1	3759824	.	CG	CGGG	22	PASS	AF=0.0355289;HP=5;NF=4;NR=8;NS=52;CA=0;DP=591
+1	3760224	rs61309375;-/A,venter	CAG	CG	100	PASS	AF=0.303624;HP=1;DB;NF=27;NR=13;NS=51;CA=0;DP=447
+1	3773150	.	CTT	CT	12	NoQCALL	AF=0.0786801;HP=2;NF=1;NR=9;NS=52;CA=0;DP=540
+1	3774838	.	GT	GTT	11	PASS	AF=0.0109686;HP=1;NF=2;NR=1;NS=52;CA=0;DP=492
+1	3774974	venter	CG	CTG	100	PASS	AF=0.552417;HP=1;NF=26;NR=38;NS=52;CA=0;DP=559
+1	3776839	.	TGG	TG	100	PASS	AF=0.0926011;HP=3;NF=5;NR=5;NS=52;CA=0;DP=441
+1	3780438	venter	CT	CTTT	100	PASS	AF=0.113197;HP=2;NF=10;NR=13;NS=52;CA=0;DP=654
+1	3780687	rs34664006;-/G	TGT	TT	50	PASS	AF=0.0614825;HP=1;DB;NF=4;NR=8;NS=50;CA=M;DP=299
+1	3784253	venter	ACTGTGCCGGCTTTCTATTC	AC	100	PASS	AF=0.0567473;HP=1;NF=81;NR=75;NS=52;CA=0;DP=627
+1	3786092	.	TACTCA	TA	100	PASS	AF=0.0330531;HP=1;NF=1;NR=6;NS=52;CA=0;DP=497
+1	3788460	rs35600694;-/ATA,watson	CA	CAATA	100	PASS	AF=0.42686;HP=1;DB;NF=20;NR=17;NS=51;CA=0;DP=533
+1	3788666	rs34172576;-/T,venter	GT	GTT	100	PASS	AF=0.481873;HP=1;DB;NF=26;NR=12;NS=52;CA=0;DP=409
+1	3804956	rs60302317;-/CAACA	AACAACA	AA	46	PASS	AF=0.0866272;HP=2;DB;NF=6;NR=2;NS=52;CA=M;DP=556
+1	3805210	rs58663935;-/AAAG	CA	CAAAGA	100	PASS	AF=0.0920558;HP=3;DB;NF=9;NR=2;NS=52;CA=0;DP=523
+1	3805480	.	GAA	GA	55	PASS	AF=0.0675729;HP=8;NF=13;NR=11;NS=52;CA=0;DP=539
+1	3805914	.	CCAGACACTGGCACCCCCCTTC	CC	100	PASS	AF=0.0288464;HP=2;NF=5;NR=4;NS=52;CA=0;DP=613
+1	3806447	rs35704040;-/C,mills	GCC	GC	100	PASS	AF=0.0700176;HP=6;DB;NF=4;NR=8;NS=52;CA=0;DP=350
+1	3807398	rs35759189;-/G,venter	AGG	AG	100	PASS	AF=0.324114;HP=3;DB;NF=21;NR=8;NS=50;CA=0;DP=355
+1	3808303	venter	GT	GTTCTTTTCTTT	100	PASS	AF=0.475205;HP=2;NF=19;NR=9;NS=52;CA=0;DP=264
+1	3809301	.	TACA	TA	100	PASS	AF=0.028676;HP=1;NF=26;NR=22;NS=52;CA=0;DP=553
+1	3813066	rs34938659;-/T	ATT	AT	100	PASS	AF=0.131264;HP=2;DB;NF=8;NR=6;NS=52;CA=0;DP=521
+1	3814885	.	TCACACACACACACACAC	TC	34	PASS	AF=0.149965;HP=1;NF=6;NR=2;NS=52;CA=M;DP=644
+1	3818483	.	AC	ACC	29	PASS	AF=0.0676027;HP=3;NF=1;NR=7;NS=50;CA=0;DP=412
+1	3820456	.	TGG	TG	12	PASS	AF=0.0215117;HP=4;NF=5;NR=1;NS=51;CA=0;DP=417
+1	3824944	.	GCTC	GC	100	PASS	AF=0.174164;HP=1;NF=9;NR=17;NS=50;CA=0;DP=277
+1	3825911	.	CG	CGGGGGG	100	PASS	AF=0.29134;HP=2;NF=24;NR=12;NS=52;CA=0;DP=514
+1	3827024	.	TTCCCT	TT	16	PASS	AF=0.0318298;HP=2;NF=34;NR=70;NS=51;CA=M;DP=394
+1	3827604	.	TG	TGG	40	PASS	AF=0.0159039;HP=1;NF=2;NR=5;NS=52;CA=0;DP=571
+1	3833062	watson	TC	TCCACC	100	PASS	AF=0.312659;HP=2;NF=17;NR=16;NS=52;CA=0;DP=463
+1	3833266	venter,watson	AT	ATCAGT	100	PASS	AF=0.497122;HP=1;NF=10;NR=19;NS=51;CA=0;DP=412
+1	3833395	.	CTATCTT	CT	24	PASS	AF=0.0218407;HP=1;NF=7;NR=3;NS=50;CA=0;DP=400
+1	3833485	.	GTCTAT	GT	100	PASS	AF=0.417779;HP=1;NF=11;NR=12;NS=50;CA=0;DP=323
+1	3833578	watson	TTATCT	TT	100	PASS	AF=0.329625;HP=2;NF=27;NR=26;NS=51;CA=0;DP=388
+1	3833880	watson	CA	CATCTA	100	PASS	AF=0.347946;HP=1;NF=11;NR=13;NS=52;CA=0;DP=458
+1	3906706	.	TGG	TG	100	PASS	AF=0.149111;HP=3;NF=11;NR=9;NS=52;CA=0;DP=498
+1	3907565	rs34088401;-/C,mills	TCC	TC	100	PASS	AF=0.191109;HP=6;DB;NF=11;NR=14;NS=51;CA=0;DP=478
+1	3909253	.	AC	ACC	100	PASS	AF=0.0974891;HP=2;NF=10;NR=9;NS=52;CA=0;DP=591
+1	3909917	rs35302885;-/T,venter	CTT	CT	100	PASS	AF=0.766256;HP=7;DB;NF=45;NR=61;NS=52;CA=0;DP=605
+1	3916501	rs55698528;-/A,venter	GA	GAA	100	PASS	AF=0.624637;HP=1;DB;NF=37;NR=28;NS=52;CA=0;DP=488
+1	3920626	rs59758170;-/TAAATAAATA	AATAAATAAATA	AA	100	PASS	AF=0.276985;HP=3;DB;NF=6;NR=6;NS=50;CA=M;DP=308
+1	3923069	.	TCG	TG	100	PASS	AF=0.224119;HP=1;NF=23;NR=7;NS=52;CA=0;DP=488
+1	3925431	rs34400281;-/T,venter	CTT	CT	100	PASS	AF=0.372459;HP=2;DB;NF=14;NR=10;NS=51;CA=0;DP=500
+1	3933527	.	ATTCCCCACAGTGTCTATGGGGACTCTAGCACGGTCAGGGACCCT	AT	100	PASS	AF=0.0367516;HP=2;NF=29;NR=33;NS=51;CA=0;DP=622
+1	3934862	venter	GCAC	GC	100	PASS	AF=0.565308;HP=1;NF=47;NR=42;NS=51;CA=0;DP=648
+1	3935044	.	TCAC	TC	40	PASS	AF=0.0156518;HP=1;NF=25;NR=8;NS=52;CA=0;DP=717
+1	3937578	rs56700097;-/A,venter	TG	TAG	100	PASS	AF=0.540707;HP=1;DB;NF=40;NR=17;NS=52;CA=0;DP=392
+1	3938627	rs58820377;-/ATAG	TTAGAT	TT	100	PASS	AF=0.0846429;HP=2;DB;NF=10;NR=11;NS=52;CA=0;DP=489
+1	3945777	.	CAGA	CA	100	PASS	AF=0.442957;HP=1;NF=49;NR=35;NS=52;CA=M;DP=511
+1	3967107	venter	GAGAA	GA	100	PASS	AF=0.226936;HP=1;NF=10;NR=15;NS=52;CA=0;DP=543
+1	3971955	rs56102422;-/T	AT	ATT	100	PASS	AF=0.275646;HP=10;DB;NF=12;NR=15;NS=52;CA=0;DP=477
+1	3973109	rs56883229;-/T,venter	ATT	AT	100	PASS	AF=0.374332;HP=8;DB;NF=7;NR=38;NS=52;CA=0;DP=398
+1	3974590	.	ATT	AT	100	PASS	AF=0.373956;HP=8;NF=19;NR=19;NS=51;CA=0;DP=352
+1	3976220	.	TTCCAGCTGTTGGACTGGCAAACAGT	TT	100	PASS	AF=0.155908;HP=3;NF=51;NR=67;NS=52;CA=0;DP=702
+1	3983232	.	GC	GCC	100	PASS	AF=0.153929;HP=3;NF=2;NR=12;NS=51;CA=0;DP=479
+1	3989673	rs34117538;-/T	CTT	CT	100	PASS	AF=0.138005;HP=7;DB;NF=10;NR=16;NS=52;CA=0;DP=480
+1	3991472	.	GT	GTT	41	PASS	AF=0.0921994;HP=10;NF=23;NR=19;NS=52;CA=0;DP=490
+1	3995340	.	GAATA	GA	100	PASS	AF=0.126804;HP=2;NF=18;NR=25;NS=51;CA=0;DP=456
+1	3995701	rs35842317;-/A	GA	GAA	100	PASS	AF=0.287765;HP=3;DB;NF=16;NR=28;NS=52;CA=0;DP=515
+1	3998289	rs34690250;-/C	AT	ATT	31	PASS	AF=0.0505667;HP=1;DB;NF=5;NR=6;NS=50;CA=0;DP=373
+1	3998556	rs35439065;-/C,venter	AC	ACC	100	PASS	AF=0.152989;HP=1;DB;NF=17;NR=4;NS=52;CA=0;DP=565
+1	4003805	.	CCCTTC	CC	100	PASS	AF=0.497734;HP=3;NF=13;NR=9;NS=52;CA=M;DP=357
+1	4004467	.	TA	TAA	100	PASS	AF=0.178845;HP=10;NF=39;NR=12;NS=52;CA=0;DP=482
+1	4005161	.	AAGA	AA	10	PASS	AF=0.109604;HP=8;NF=5;NR=3;NS=52;CA=0;DP=418
+1	4009724	.	GGAGAGGGAGAAG	GG	100	PASS	AF=0.0443217;HP=4;NF=7;NR=9;NS=51;CA=0;DP=347
+1	4010638	rs59300943;-/T	CT	CTT	100	PASS	AF=0.238748;HP=5;DB;NF=17;NR=13;NS=52;CA=0;DP=424
+1	4018608	.	GGGAG	GG	14	PASS	AF=0.0210215;HP=3;NF=11;NR=22;NS=52;CA=0;DP=439
+1	4020045	rs60135555;-/AAA,venter	TA	TAAAA	55	PASS	AF=0.669408;HP=9;DB;NF=19;NR=3;NS=52;CA=0;DP=315
+1	4021381	.	CTGGGAAC	CC	26	PASS	AF=0.0682584;HP=1;NF=1;NR=7;NS=52;CA=0;DP=500
+1	4022270	.	TG	TCG	59	PASS	AF=0.0269606;HP=6;NF=2;NR=3;NS=52;CA=0;DP=522
+1	4022431	rs58149124;-/CC,watson	TC	TCCC	100	PASS	AF=0.833755;HP=1;DB;NF=29;NR=41;NS=52;CA=0;DP=574
+1	4024133	rs56013829;-/GTCA,venter	ACAGTC	AC	100	PASS	AF=0.444062;HP=1;DB;NF=29;NR=25;NS=52;CA=0;DP=599
+1	4024168	rs56372495;-/AC,venter	TCAC	TC	100	PASS	AF=0.370935;HP=1;DB;NF=14;NR=39;NS=52;CA=0;DP=645
+1	4024408	rs55816119;-/TT,watson	TC	TCAC	100	PASS	AF=0.479654;HP=1;DB;NF=17;NR=29;NS=52;CA=0;DP=726
+1	4024524	.	ACTC	AC	100	PASS	AF=0.220192;HP=1;NF=11;NR=5;NS=52;CA=0;DP=721
+1	4024673	.	TT	TTCACT	100	PASS	AF=0.173855;HP=2;NF=11;NR=13;NS=52;CA=0;DP=887
+1	4024704	.	TCAG	TG	100	PASS	AF=0.0291681;HP=1;NF=6;NR=1;NS=52;CA=0;DP=750
+1	4024735	venter	TC	TCAC	100	PASS	AF=0.247468;HP=1;NF=19;NR=5;NS=52;CA=0;DP=775
+1	4024928	.	CTCAGT	CT	100	PASS	AF=0.0974879;HP=1;NF=11;NR=7;NS=52;CA=0;DP=919
+1	4025065	.	TCAC	TC	100	PASS	AF=0.273013;HP=1;NF=7;NR=12;NS=52;CA=0;DP=714
+1	4025127	.	ACTC	AC	100	PASS	AF=0.380734;HP=1;NF=17;NR=20;NS=52;CA=M;DP=574
+1	4025165	.	TC	TCACTCAC	100	PASS	AF=0.0820414;HP=1;NF=1;NR=9;NS=52;CA=M;DP=574
+1	4025232	watson	TC	TCAC	100	PASS	AF=0.631924;HP=1;NF=15;NR=11;NS=52;CA=M;DP=459
+1	4025339	.	TTCACT	TT	53	PASS	AF=0.159738;HP=2;NF=17;NR=14;NS=51;CA=0;DP=609
+1	4025399	.	CA	CATA	100	PASS	AF=0.0862676;HP=1;NF=4;NR=7;NS=52;CA=0;DP=506
+1	4025472	.	CA	CATTTA	39	PASS	AF=0.0270865;HP=1;NF=2;NR=1;NS=52;CA=0;DP=538
+1	4025543	venter,watson	TC	TCAC	100	PASS	AF=0.26036;HP=1;NF=9;NR=12;NS=52;CA=0;DP=482
+1	4025589	.	AC	ACTC	53	PASS	AF=0.0696821;HP=1;NF=1;NR=1;NS=52;CA=0;DP=575
+1	4025678	watson	TACTCA	TA	100	PASS	AF=0.299176;HP=1;NF=14;NR=7;NS=52;CA=0;DP=549
+1	4025718	.	CATT	CT	100	PASS	AF=0.0815807;HP=1;NF=8;NR=6;NS=52;CA=0;DP=570
+1	4025810	watson	TC	TCAC	100	PASS	AF=0.240222;HP=1;NF=8;NR=8;NS=52;CA=0;DP=442
+1	4025920	.	ACTCACACTC	AC	15	PASS	AF=0.0440807;HP=1;NF=5;NR=6;NS=52;CA=0;DP=439
+1	4025988	.	ATCACT	AT	100	PASS	AF=0.115745;HP=1;NF=7;NR=3;NS=52;CA=M;DP=409
+1	4026021	.	ATTCGC	AC	19	PASS	AF=0.0230633;HP=2;NF=4;NR=4;NS=52;CA=0;DP=408
+1	4026091	.	ACAGTC	AC	100	PASS	AF=0.239672;HP=1;NF=10;NR=12;NS=52;CA=0;DP=418
+1	4026188	.	GTCACTCGTT	GT	100	PASS	AF=0.0942528;HP=1;NF=17;NR=15;NS=51;CA=M;DP=704
+1	4026243	.	AC	ACTCACTC	100	PASS	AF=0.0701669;HP=1;NF=8;NR=2;NS=52;CA=0;DP=852
+1	4026341	.	AC	ACTC	100	PASS	AF=0.180464;HP=1;NF=7;NR=12;NS=52;CA=0;DP=797
+1	4026433	.	AC	ACTCACAGTC	100	PASS	AF=0.0755971;HP=1;NF=10;NR=4;NS=52;CA=0;DP=727
+1	4026489	.	CCACTC	CC	100	PASS	AF=0.152175;HP=2;NF=20;NR=14;NS=52;CA=0;DP=896
+1	4026521	.	AT	ACT	18	PASS	AF=0.0348752;HP=1;NF=8;NR=8;NS=52;CA=0;DP=896
+1	4026676	.	ACACTC	AC	100	PASS	AF=0.345964;HP=1;NF=25;NR=27;NS=52;CA=0;DP=805
+1	4026745	.	ACTC	AC	100	PASS	AF=0.277096;HP=1;NF=6;NR=11;NS=52;CA=0;DP=625
+1	4026831	.	AC	ACTC	100	PASS	AF=0.158736;HP=1;NF=13;NR=9;NS=52;CA=0;DP=585
+1	4026904	.	TACTCA	TA	59	PASS	AF=0.094457;HP=1;NF=7;NR=4;NS=52;CA=0;DP=594
+1	4026996	.	TT	TTCACT	100	PASS	AF=0.0816069;HP=2;NF=19;NR=16;NS=52;CA=0;DP=668
+1	4027100	watson	GT	GTCACT	100	PASS	AF=0.51624;HP=1;NF=22;NR=20;NS=52;CA=0;DP=958
+1	4027153	.	AC	ACTCACACTC	100	PASS	AF=0.221157;HP=1;NF=11;NR=7;NS=52;CA=0;DP=694
+1	4027249	.	ACACTCGCTCAGTC	AC	100	PASS	AF=0.191741;HP=1;NF=20;NR=16;NS=52;CA=0;DP=528
+1	4027301	.	TCAC	TC	100	PASS	AF=0.21653;HP=1;NF=6;NR=9;NS=52;CA=0;DP=511
+1	4027378	.	TT	TTCACT	100	PASS	AF=0.23813;HP=2;NF=19;NR=16;NS=52;CA=0;DP=565
+1	4027440	.	TT	TTCACT	100	PASS	AF=0.351897;HP=2;NF=28;NR=13;NS=52;CA=0;DP=736
+1	4031776	venter,watson	GC	GCTGCTCC	100	PASS	AF=0.57914;HP=1;NF=17;NR=13;NS=52;CA=0;DP=475
+1	4046995	rs60127181;-/ATG,watson	GC	GGATC	100	PASS	AF=0.863384;HP=1;DB;NF=37;NR=32;NS=51;CA=0;DP=427
+1	4053051	.	AC	AACC	10	PASS	AF=0.0731381;HP=1;NF=2;NR=3;NS=52;CA=0;DP=453
+1	4056743	rs57501900;-/T,venter	ATT	AT	100	PASS	AF=0.863012;HP=6;DB;NF=63;NR=45;NS=52;CA=0;DP=485
+1	4078234	venter,watson	CTGCCTGTGTGAGCAAGAT	CT	100	PASS	AF=0.308447;HP=1;NF=26;NR=18;NS=52;CA=0;DP=484
+1	4080449	rs35774756;-/T	GTT	GT	100	PASS	AF=0.285891;HP=2;DB;NF=20;NR=24;NS=51;CA=0;DP=526
+1	4082493	rs35701497;-/G	CGG	CG	100	PASS	AF=0.277913;HP=4;DB;NF=14;NR=16;NS=52;CA=0;DP=416
+1	4086137	.	CA	CTA	100	PASS	AF=0.0260425;HP=1;NF=4;NR=2;NS=52;CA=0;DP=569
+1	4088196	.	TTCT	TT	100	PASS	AF=0.0658972;HP=3;NF=67;NR=77;NS=51;CA=B;DP=647
+1	4091673	rs56198003;-/TTA	GTTAT	GT	100	PASS	AF=0.0274099;HP=2;DB;NF=4;NR=7;NS=52;CA=0;DP=489
+1	4093407	rs35442233;-/G,venter	TGG	TG	100	PASS	AF=0.056726;HP=4;DB;NF=4;NR=5;NS=51;CA=0;DP=432
+1	4097902	rs5772141;-/ATT,mills,venter,watson	CA	CATTA	100	PASS	AF=0.999995;HP=1;DB;NF=38;NR=34;NS=52;CA=0;DP=432
+1	4106716	.	AC	ACACACACACACGC	100	PASS	AF=0.316911;HP=1;NF=1;NR=1;NS=52;CA=0;DP=601
+1	4114274	rs60603556;-/CAT,watson	AATCA	AA	100	PASS	AF=0.135224;HP=3;DB;NF=17;NR=9;NS=51;CA=0;DP=587
+1	4114592	rs56285575;-/ACA,venter	AAACA	AA	100	PASS	AF=0.254759;HP=3;DB;NF=21;NR=18;NS=52;CA=0;DP=554
+1	4114812	.	TTAT	TT	33	PASS	AF=0.14738;HP=3;NF=5;NR=4;NS=52;CA=0;DP=411
+1	4114996	.	AA	AATTATTA	11	PASS	AF=0.228122;HP=2;NF=26;NR=29;NS=49;CA=0;DP=276
+1	4120825	.	GAA	GA	43	PASS	AF=0.147904;HP=2;NF=11;NR=17;NS=51;CA=0;DP=328
+1	4121802	.	ATGT	AT	11	PASS	AF=0.0113836;HP=1;NF=24;NR=16;NS=52;CA=0;DP=570
+1	4131826	.	ATTGTTT	AT	100	PASS	AF=0.999996;HP=2;NF=38;NR=35;NS=52;CA=0;DP=456
+1	4134659	rs35271731;-/G	TG	TGG	100	PASS	AF=0.417516;HP=5;DB;NF=21;NR=19;NS=52;CA=0;DP=429
+1	4139315	rs35859581;-/T,venter	GT	GTT	100	PASS	AF=0.371694;HP=2;DB;NF=12;NR=16;NS=52;CA=0;DP=444
+1	4144542	.	CAA	CA	100	PASS	AF=0.0915309;HP=2;NF=7;NR=8;NS=52;CA=M;DP=461
+1	4149378	rs35644791;-/CCT,venter,watson	AC	ACCTC	100	PASS	AF=0.955034;HP=2;DB;NF=35;NR=24;NS=52;CA=0;DP=461
+1	4150078	.	ATC	AC	100	PASS	AF=0.0248618;HP=1;NF=3;NR=1;NS=52;CA=0;DP=489
+1	4158176	rs61115653;-/A	CA	CAA	100	PASS	AF=0.109858;HP=9;DB;NF=9;NR=8;NS=52;CA=0;DP=480
+1	4158371	rs35550030;-/G	AGA	AA	100	PASS	AF=0.282272;HP=1;DB;NF=22;NR=13;NS=52;CA=0;DP=508
+1	4160853	.	AG	AGTG	100	PASS	AF=0.883963;HP=1;NF=52;NR=40;NS=52;CA=0;DP=475
+1	4163479	rs35439066;-/T,venter	ATT	AT	100	PASS	AF=0.421487;HP=7;DB;NF=35;NR=40;NS=52;CA=0;DP=580
+1	4165518	rs5772143;-/A,mills	CAT	CT	100	PASS	AF=0.0997002;HP=1;DB;NF=8;NR=9;NS=52;CA=0;DP=569
+1	4168412	.	TG	TGG	100	PASS	AF=0.0597927;HP=5;NF=7;NR=5;NS=50;CA=0;DP=411
+1	4174019	.	CCTTTC	CC	100	PASS	AF=0.223832;HP=2;NF=5;NR=11;NS=51;CA=M;DP=369
+1	4176371	rs5772145;-/GGGCT,mills,venter,watson	GG	GGGGCTG	100	PASS	AF=0.965127;HP=4;DB;NF=37;NR=39;NS=51;CA=0;DP=577
+1	4180359	rs35134459;-/T,venter	CG	CTG	100	PASS	AF=0.994644;HP=2;DB;NF=70;NR=40;NS=52;CA=0;DP=510
+1	4198168	.	GCCATTTACATCCCACC	GC	100	PASS	AF=0.0947023;HP=2;NF=47;NR=53;NS=52;CA=0;DP=625
+1	4203370	.	TCAC	TC	22	PASS	AF=0.151126;HP=1;NF=40;NR=22;NS=51;CA=0;DP=481
+1	4224147	.	ATGT	AT	100	PASS	AF=0.459042;HP=1;NF=45;NR=57;NS=52;CA=0;DP=508
+1	4236168	venter,watson	GT	GTCCTGTT	100	PASS	AF=0.465028;HP=1;NF=21;NR=21;NS=51;CA=0;DP=473
+1	4238553	.	TAG	TG	100	PASS	AF=0.0884036;HP=1;NF=3;NR=3;NS=52;CA=0;DP=313
+1	4243904	.	TG	TGGGGG	28	PASS	AF=0.177328;HP=1;NF=6;NR=9;NS=52;CA=0;DP=598
+1	4252300	.	AATTTA	AA	27	PASS	AF=0.0160294;HP=2;NF=16;NR=12;NS=52;CA=0;DP=550
+1	4256051	.	CC	CCTCAC	100	PASS	AF=0.423907;HP=2;NF=10;NR=6;NS=52;CA=M;DP=450
+1	4256251	rs56817136;-/AATCCATC	TC	TCATCAATCC	27	PASS	AF=0.483921;HP=1;DB;NF=24;NR=28;NS=52;CA=M;DP=501
+1	4256338	rs59859709;-/CCAT	CCCATC	CC	100	PASS	AF=0.420087;HP=3;DB;NF=47;NR=73;NS=52;CA=0;DP=510
+1	4258560	rs35749795;-/G,venter	TGG	TG	100	PASS	AF=0.563751;HP=3;DB;NF=30;NR=43;NS=52;CA=0;DP=533
+1	4270968	rs5772150;-/A,mills,venter	TAA	TA	100	PASS	AF=0.863858;HP=2;DB;NF=66;NR=65;NS=52;CA=0;DP=554
+1	4272781	rs34523387;-/CA,venter,watson	TCAC	TC	100	PASS	AF=0.221206;HP=1;DB;NF=55;NR=32;NS=52;CA=0;DP=555
+1	4276688	rs56762609;-/A	CA	CAA	25	PASS	AF=0.0168189;HP=4;DB;NF=5;NR=7;NS=52;CA=0;DP=567
+1	4278344	rs33957131;-/A,mills	TAT	TT	100	PASS	AF=0.260307;HP=1;DB;NF=13;NR=14;NS=52;CA=M;DP=390
+1	4280264	rs35972891;-/G,venter	TG	TGG	100	PASS	AF=0.36321;HP=6;DB;NF=16;NR=21;NS=52;CA=0;DP=487
+1	4280920	rs3058085;-/AGA,mills,venter,watson	AT	ATCTT	100	PASS	AF=0.75024;HP=1;DB;NF=34;NR=50;NS=52;CA=0;DP=518
+1	4281851	rs59086076;-/TTGT	CTGTTT	CT	100	PASS	AF=0.15371;HP=1;DB;NF=12;NR=13;NS=52;CA=0;DP=454
+1	4287207	rs3986843;-/CCT	CA	CAGGA	100	PASS	AF=0.100002;HP=1;DB;NF=8;NR=1;NS=52;CA=0;DP=451
+1	4289708	.	GTGTTAG	GG	37	PASS	AF=0.0904846;HP=1;NF=3;NR=9;NS=52;CA=0;DP=447
+1	4291813	.	CGC	CC	41	PASS	AF=0.05598;HP=1;NF=1;NR=9;NS=52;CA=0;DP=504
+1	4291856	rs33950418;-/C,mills	ACA	AA	53	PASS	AF=0.0424203;HP=1;DB;NF=2;NR=10;NS=52;CA=M;DP=504
+1	4292024	rs33982329;-/CA,mills	CG	CATG	100	PASS	AF=0.0974178;HP=1;DB;NF=14;NR=14;NS=52;CA=0;DP=697
+1	4296830	.	CTT	CT	100	PASS	AF=0.101792;HP=2;NF=15;NR=4;NS=52;CA=0;DP=805
+1	4298115	rs34054009;-/G,venter	AG	AGG	100	PASS	AF=0.314255;HP=2;DB;NF=25;NR=10;NS=52;CA=0;DP=565
+1	4310246	rs35999105;-/A	TA	TAA	100	PASS	AF=0.229765;HP=5;DB;NF=23;NR=13;NS=52;CA=0;DP=488
+1	4310305	venter	GA	GAA	39	PASS	AF=0.078696;HP=9;NF=15;NR=5;NS=52;CA=0;DP=455
+1	4312461	.	GAAAGAAA	GA	24	PASS	AF=0.0372797;HP=3;NF=23;NR=6;NS=52;CA=M;DP=401
+1	4313453	.	GG	GTG	23	PASS	AF=0.026167;HP=2;NF=2;NR=5;NS=52;CA=0;DP=614
+1	4315016	rs34078493;-/T,venter	CT	CTT	100	PASS	AF=0.459017;HP=1;DB;NF=25;NR=37;NS=52;CA=0;DP=493
+1	4316236	rs35864764;-/TC	ATCT	AT	100	PASS	AF=0.164629;HP=1;DB;NF=18;NR=15;NS=52;CA=0;DP=434
+1	4317119	rs35907112;-/AG	AAGA	AA	100	PASS	AF=0.210583;HP=3;DB;NF=19;NR=13;NS=52;CA=0;DP=652
+1	4319781	rs34098980;-/AAAAA,mills,venter	CC	CAAAAAC	100	PASS	AF=0.451406;HP=2;DB;NF=9;NR=1;NS=52;CA=0;DP=605
+1	4323411	.	GT	GTT	41	PASS	AF=0.0448346;HP=6;NF=4;NR=5;NS=52;CA=0;DP=498
+1	4326343	.	CG	CGGGGGGGGGGG	100	PASS	AF=0.212625;HP=2;NF=5;NR=11;NS=52;CA=0;DP=475
+1	4329138	.	GTGAT	GT	47	PASS	AF=0.0168095;HP=1;NF=35;NR=37;NS=52;CA=0;DP=675
+1	4329500	venter	ATGGTGATGGT	AT	100	PASS	AF=0.0491;HP=1;NF=35;NR=49;NS=52;CA=0;DP=718
+1	4333035	.	CCACTC	CC	100	PASS	AF=0.0536691;HP=2;NF=18;NR=17;NS=52;CA=0;DP=614
+1	4333090	.	CCCATC	CC	100	PASS	AF=0.896174;HP=3;NF=52;NR=56;NS=52;CA=0;DP=564
+1	4333868	rs34013096;-/CCAT	AC	ACCATC	100	PASS	AF=0.411752;HP=2;DB;NF=63;NR=59;NS=52;CA=0;DP=556
+1	4352929	.	TAA	TA	100	PASS	AF=0.0606075;HP=5;NF=10;NR=5;NS=51;CA=0;DP=422
+1	4360308	.	CAA	CA	100	PASS	AF=0.160821;HP=3;NF=12;NR=13;NS=52;CA=0;DP=502
+1	4360675	rs55750624;-/A	GAA	GA	100	PASS	AF=0.209252;HP=2;DB;NF=18;NR=10;NS=52;CA=0;DP=456
+1	4362123	rs57250327;-/AAATT	TA	TAATTAA	100	PASS	AF=0.202867;HP=2;DB;NF=23;NR=24;NS=52;CA=0;DP=404
+1	4372014	rs34773421;-/A,venter	TAA	TA	100	PASS	AF=0.507594;HP=2;DB;NF=43;NR=31;NS=52;CA=0;DP=496
+1	4373092	.	CATTTA	CA	100	PASS	AF=0.155807;HP=1;NF=19;NR=10;NS=52;CA=0;DP=440
+1	4375952	.	TCT	TT	100	PASS	AF=0.0215948;HP=1;NF=3;NR=2;NS=52;CA=0;DP=530
+1	4376164	rs57973702;-/TG,venter	CG	CGTG	100	PASS	AF=0.555727;HP=1;DB;NF=33;NR=60;NS=52;CA=0;DP=552
+1	4382255	.	GT	GTT	100	PASS	AF=0.134524;HP=8;NF=12;NR=14;NS=52;CA=0;DP=445
+1	4382929	.	CG	CGCCGTGCCCTGCTCAG	100	PASS	AF=0.293977;HP=1;NF=3;NR=1;NS=52;CA=0;DP=423
+1	4386769	rs34696074;-/G	TGG	TG	100	PASS	AF=0.524405;HP=3;DB;NF=43;NR=31;NS=51;CA=0;DP=586
+1	4386900	rs35831569;-/GTGA,watson	TG	TGTGAG	100	PASS	AF=0.786341;HP=1;DB;NF=49;NR=47;NS=52;CA=0;DP=728
+1	4387089	rs35106948;-/GA,venter,watson	TGAG	TG	100	PASS	AF=0.76407;HP=1;DB;NF=42;NR=48;NS=52;CA=0;DP=730
+1	4398343	rs56075652;-/AGCTAG,mills,venter,watson	GGAGCTAG	GG	100	PASS	AF=0.850798;HP=2;DB;NF=51;NR=52;NS=52;CA=0;DP=535
+1	4403445	.	ATC	AC	100	PASS	AF=0.0257077;HP=1;NF=3;NR=3;NS=52;CA=0;DP=579
+1	4413424	.	GGAAG	GG	100	PASS	AF=0.0911622;HP=2;NF=13;NR=11;NS=52;CA=0;DP=539
+1	4415363	rs35655214;-/A,mills,venter	CAA	CA	100	PASS	AF=0.279808;HP=10;DB;NF=16;NR=13;NS=52;CA=0;DP=623
+1	4419729	rs34301403;-/T,venter	CT	CTT	100	PASS	AF=0.276688;HP=3;DB;NF=23;NR=17;NS=52;CA=0;DP=491
+1	4429935	.	ACC	AC	100	PASS	AF=0.121066;HP=2;NF=8;NR=7;NS=52;CA=0;DP=509
+1	4432975	rs35185885;-/TTAT,venter	TT	TTTTAT	100	PASS	AF=0.370788;HP=4;DB;NF=7;NR=50;NS=51;CA=0;DP=329
+1	4433724	.	AC	ACC	100	PASS	AF=0.191535;HP=2;NF=16;NR=17;NS=52;CA=0;DP=609
+1	4434361	.	GA	GATGATATTGAAA	100	PASS	AF=0.175787;HP=1;NF=8;NR=5;NS=52;CA=0;DP=496
+1	4439328	rs55695069;-/TGTG,watson	TGTGAG	TG	100	PASS	AF=0.115075;HP=1;DB;NF=13;NR=10;NS=51;CA=0;DP=510
+1	4444447	.	GC	GCC	100	PASS	AF=0.126735;HP=1;NF=8;NR=6;NS=52;CA=0;DP=442
+1	4444562	watson	TTCG	TG	100	PASS	AF=0.167206;HP=3;NF=13;NR=9;NS=52;CA=0;DP=477
+1	4448379	rs55971665;-/A,venter	GAA	GA	100	PASS	AF=0.999997;HP=5;DB;NF=29;NR=34;NS=51;CA=0;DP=398
+1	4456774	rs34368344;-/CTCA,watson	TCTCAC	TC	100	PASS	AF=0.4985;HP=1;DB;NF=46;NR=35;NS=52;CA=0;DP=679
+1	4456823	.	TT	TTTTCTCTCT	100	PASS	AF=0.281015;HP=3;NF=18;NR=7;NS=52;CA=0;DP=566
+1	4460399	.	CAGA	CA	17	PASS	AF=0.0162627;HP=1;NF=4;NR=1;NS=52;CA=0;DP=437
+1	4461064	.	TG	TGGG	100	PASS	AF=0.136493;HP=8;NF=11;NR=12;NS=52;CA=0;DP=516
+1	4461120	.	GAGTCA	GA	100	PASS	AF=0.106497;HP=1;NF=4;NR=10;NS=52;CA=0;DP=513
+1	4462914	rs35786528;-/T,venter	GTT	GT	100	PASS	AF=0.636288;HP=9;DB;NF=46;NR=44;NS=52;CA=0;DP=457
+1	4464201	rs35933446;-/G	AGC	AC	100	PASS	AF=0.0422945;HP=1;DB;NF=3;NR=5;NS=52;CA=0;DP=559
+1	4465553	rs33984734;-/C,mills,venter	GCC	GC	100	PASS	AF=0.832437;HP=3;DB;NF=43;NR=36;NS=52;CA=0;DP=507
+1	4465878	rs55781312;-/GAACA,watson	TACAGAA	TA	100	PASS	AF=0.547352;HP=1;DB;NF=48;NR=55;NS=52;CA=0;DP=612
+1	4466414	rs34356738;-/T,venter	AT	ATT	100	PASS	AF=0.0343632;HP=4;DB;NF=5;NR=2;NS=52;CA=0;DP=523
+1	4468803	.	CT	CTTTTCTTTTCTTT	100	PASS	AF=0.185641;HP=2;NF=2;NR=1;NS=51;CA=0;DP=271
+1	4469024	.	TT	TTGTGT	26	PASS	AF=0.65093;HP=2;NF=51;NR=54;NS=51;CA=0;DP=465
+1	4470162	rs34280110;-/T,venter	CT	CTT	100	PASS	AF=0.19103;HP=3;DB;NF=13;NR=16;NS=52;CA=0;DP=581
+1	4472390	rs35540877;-/AAG	TAAGA	TA	100	PASS	AF=0.0513799;HP=2;DB;NF=4;NR=3;NS=52;CA=0;DP=531
+1	4481812	rs34806922;-/A,venter	GAA	GA	100	PASS	AF=0.0356083;HP=3;DB;NF=4;NR=4;NS=52;CA=0;DP=576
+1	4482705	.	CA	CATCTA	100	PASS	AF=0.203301;HP=1;NF=34;NR=52;NS=50;CA=M;DP=382
+1	4482808	.	CTA	CA	16	PASS	AF=0.0550307;HP=1;NF=1;NR=1;NS=51;CA=M;DP=356
+1	4482848	rs5772166;-/TCTCTCTC,mills	ATCTCTCTCT	AT	100	PASS	AF=0.561639;HP=1;DB;NF=52;NR=17;NS=51;CA=M;DP=311
+1	4484471	rs3059158;-/CT,mills,watson	AG	ACTG	100	PASS	AF=0.497825;HP=1;DB;NF=31;NR=34;NS=52;CA=0;DP=538
+1	4486660	rs34976033;-/CCCT,mills,venter,watson	GCTCCC	GC	100	PASS	AF=0.593551;HP=1;DB;NF=42;NR=55;NS=52;CA=0;DP=566
+1	4486840	rs35808993;-/A,venter	GAT	GT	100	PASS	AF=0.0446408;HP=1;DB;NF=4;NR=4;NS=52;CA=0;DP=539
+1	4495865	watson	TGACCT	TT	100	PASS	AF=0.477912;HP=1;NF=15;NR=22;NS=52;CA=0;DP=386
+1	4498895	.	TAAACTCA	TA	100	PASS	AF=0.365307;HP=3;NF=30;NR=28;NS=52;CA=0;DP=561
+1	4499763	.	TT	TTTTAGTTTAGTTTAGTTTAGTTTAGT	15	PASS	AF=0.437504;HP=4;NF=5;NR=8;NS=51;CA=0;DP=440
+1	4500994	rs57293099;-/A,venter	GG	GAG	19	PASS	AF=0.533167;HP=5;DB;NF=26;NR=15;NS=51;CA=0;DP=466
+1	4501978	rs34937816;-/T,mills,venter	GT	GTT	100	PASS	AF=0.677682;HP=1;DB;NF=47;NR=42;NS=52;CA=0;DP=475
+1	4504724	venter,watson	TAGACA	TA	100	PASS	AF=0.381777;HP=1;NF=34;NR=33;NS=52;CA=0;DP=728
+1	4504861	venter	TACAGAGAGAGACAGAGAGA	TA	100	PASS	AF=0.208225;HP=1;NF=42;NR=31;NS=52;CA=0;DP=820
+1	4506249	rs56013880;-/T,mills,venter	GC	GTC	100	PASS	AF=0.652109;HP=2;DB;NF=41;NR=48;NS=52;CA=0;DP=522
+1	4506287	venter	TAG	TG	100	PASS	AF=0.348604;HP=1;NF=23;NR=27;NS=52;CA=0;DP=534
+1	4510123	rs35963445;-/C,venter	TC	TCC	100	PASS	AF=0.750939;HP=6;DB;NF=32;NR=50;NS=52;CA=0;DP=488
+1	4511427	rs34235356;-/T,venter	AT	ATT	100	PASS	AF=0.559297;HP=8;DB;NF=40;NR=27;NS=52;CA=0;DP=549
+1	4512561	rs57315980;-/GAG	TGGAG	TG	100	PASS	AF=0.0276885;HP=2;DB;NF=7;NR=4;NS=52;CA=0;DP=581
+1	4512788	rs56318426;-/GGATAGTGTG	TC	TGTGTGGGATAC	100	PASS	AF=0.145759;HP=1;DB;NF=7;NR=6;NS=52;CA=0;DP=570
+1	4513234	rs5772168;-/ATCA,venter,watson	TA	TATCAA	100	PASS	AF=0.761132;HP=1;DB;NF=45;NR=38;NS=52;CA=0;DP=478
+1	4513552	rs34248962;-/G,venter	CTC	CC	100	PASS	AF=0.397344;HP=1;DB;NF=19;NR=21;NS=52;CA=0;DP=502
+1	4518079	.	CTTTATGTCAAC	CC	31	PASS	AF=0.0537494;HP=3;NF=13;NR=6;NS=52;CA=0;DP=567
+1	4519870	.	CATAA	CA	100	PASS	AF=0.156873;HP=1;NF=25;NR=19;NS=52;CA=0;DP=518
+1	4520552	venter,watson	ATATT	AT	100	PASS	AF=0.0454741;HP=1;NF=13;NR=21;NS=52;CA=0;DP=523
+1	4524683	rs60936673;-/A,venter	GAC	GC	100	PASS	AF=0.0433734;HP=1;DB;NF=5;NR=1;NS=51;CA=0;DP=407
+1	4531795	.	CG	CGAGCAGATAG	100	PASS	AF=0.0529244;HP=1;NF=2;NR=3;NS=52;CA=0;DP=598
+1	4533811	rs61232512;-/TCCCTCCTGGACAGCCAGG,watson	TCCTCCTGGACAGCCAGGTCC	TC	100	PASS	AF=0.455665;HP=2;DB;NF=9;NR=12;NS=52;CA=0;DP=455
+1	4535415	rs34971058;-/C,mills,venter	GC	GCC	100	PASS	AF=0.872856;HP=1;DB;NF=71;NR=50;NS=52;CA=0;DP=585
+1	4540778	rs5772169;-/T,mills	CTG	CG	100	PASS	AF=0.129616;HP=1;DB;NF=9;NR=6;NS=52;CA=0;DP=518
+1	4541031	.	TT	TTTTCT	100	PASS	AF=0.0665496;HP=6;NF=18;NR=24;NS=51;CA=0;DP=371
+1	4541492	rs5772170;-/G,mills,venter	TG	TGG	100	PASS	AF=0.912727;HP=3;DB;NF=57;NR=39;NS=52;CA=0;DP=454
+1	4542962	.	CC	CCTCTCTCTCTC	100	PASS	AF=0.767807;HP=2;NF=57;NR=35;NS=52;CA=0;DP=481
+1	4544333	rs3059964;-/CT,venter	ACTC	AC	100	PASS	AF=0.941425;HP=1;DB;NF=54;NR=73;NS=52;CA=0;DP=591
+1	4547027	rs34146010;-/C	ACC	AC	100	PASS	AF=0.974502;HP=2;DB;NF=55;NR=74;NS=52;CA=0;DP=535
+1	4547927	rs34056554;-/T,venter	ATT	AT	100	PASS	AF=0.867021;HP=3;DB;NF=7;NR=12;NS=51;CA=0;DP=398
+1	4551259	rs34018288;-/TG,venter,watson	CT	CTGT	100	PASS	AF=0.964821;HP=1;DB;NF=25;NR=27;NS=52;CA=0;DP=445
+1	4552887	.	GT	GTCT	100	PASS	AF=0.155774;HP=1;NF=6;NR=7;NS=52;CA=0;DP=507
+1	4556585	rs3833958;-/GGGCT,venter	GA	GAGCCCA	100	PASS	AF=0.248571;HP=1;DB;NF=9;NR=9;NS=52;CA=0;DP=416
+1	4558195	rs58248788;-/T,venter	ATT	AT	100	PASS	AF=0.949748;HP=4;DB;NF=38;NR=18;NS=51;CA=0;DP=446
+1	4558625	.	AGA	AA	100	PASS	AF=0.105248;HP=1;NF=12;NR=4;NS=52;CA=0;DP=526
+1	4570630	.	GT	GGGTTT	14	PASS	AF=0.0570941;HP=1;NF=4;NR=2;NS=52;CA=0;DP=480
+1	4574298	.	GC	GAC	41	PASS	AF=0.0333335;HP=2;NF=1;NR=4;NS=52;CA=0;DP=497
+1	4574507	.	TT	TTCCTCTAATGCT	100	PASS	AF=0.406213;HP=2;NF=13;NR=8;NS=52;CA=0;DP=437
+1	4577694	rs33988719;-/G,mills,venter	TG	TGG	100	PASS	AF=0.999997;HP=1;DB;NF=52;NR=28;NS=52;CA=0;DP=381
+1	4578235	.	TAT	TT	26	PASS	AF=0.292482;HP=1;NF=8;NR=14;NS=51;CA=0;DP=330
+1	4580634	.	ATAAAATA	AA	100	PASS	AF=0.328083;HP=1;NF=11;NR=4;NS=51;CA=M;DP=372
+1	4581760	.	CTT	CT	100	PASS	AF=0.0551414;HP=2;NF=4;NR=7;NS=52;CA=0;DP=578
+1	4583153	rs35427335;-/CA,venter,watson	GCAC	GC	100	PASS	AF=0.0310016;HP=1;DB;NF=3;NR=4;NS=52;CA=0;DP=483
+1	4586257	rs34899280;-/T	GTC	GC	100	PASS	AF=0.311452;HP=1;DB;NF=16;NR=8;NS=51;CA=0;DP=441
+1	4589959	venter,watson	GG	GGGCCTG	100	PASS	AF=0.0494854;HP=3;NF=3;NR=4;NS=52;CA=0;DP=469
+1	4590830	rs34057361;-/GCAAAGC,mills,venter,watson	TGCAAAGCG	TG	100	PASS	AF=0.739178;HP=1;DB;NF=42;NR=52;NS=50;CA=0;DP=465
+1	4595540	rs56784481;-/T	TCT	TT	53	PASS	AF=0.154234;HP=1;DB;NF=7;NR=21;NS=52;CA=0;DP=439
+1	4596270	.	AC	ACGCTGAGGCTGCAGCACCCCTCGTGGAGC	100	PASS	AF=0.171201;HP=1;NF=6;NR=1;NS=52;CA=0;DP=498
+1	4600396	rs36042545;-/AT,venter	CATA	CA	100	PASS	AF=0.185579;HP=1;DB;NF=24;NR=23;NS=52;CA=0;DP=357
+1	4603645	rs60786353;-/C,venter	AC	ACC	100	PASS	AF=0.999998;HP=1;DB;NF=76;NR=57;NS=52;CA=0;DP=571
+1	4607282	.	GTGAT	GT	100	PASS	AF=0.287968;HP=1;NF=38;NR=26;NS=52;CA=0;DP=810
+1	4607435	.	GTGAT	GT	100	PASS	AF=0.347474;HP=1;NF=39;NR=53;NS=52;CA=0;DP=674
+1	4611309	.	CGTGTG	CG	100	PASS	AF=0.311775;HP=1;NF=38;NR=31;NS=52;CA=0;DP=486
+1	4621966	rs35610947;-/GT	TTGT	TT	100	PASS	AF=0.252136;HP=3;DB;NF=41;NR=42;NS=52;CA=0;DP=612
+1	4623256	rs59174221;-/CTCCAGAAAGCAC	GGAAAGCACCTCCAG	GG	100	PASS	AF=0.248792;HP=2;DB;NF=24;NR=28;NS=52;CA=0;DP=458
+1	4623618	rs60584333;-/GTGTCGGGAGCAGAGACTG,venter	GC	GCTGGTGTCGGGAGCAGAGAC	100	PASS	AF=0.624955;HP=1;DB;NF=8;NR=16;NS=51;CA=0;DP=518
+1	4628242	rs56871532;-/TG,venter,watson	CTGT	CT	100	PASS	AF=0.630417;HP=1;DB;NF=46;NR=41;NS=52;CA=0;DP=605
+1	4631325	watson	GAGGACATA	GA	100	PASS	AF=0.0694082;HP=1;NF=14;NR=10;NS=51;CA=0;DP=388
+1	4633949	.	TCC	TC	100	PASS	AF=0.223776;HP=7;NF=13;NR=4;NS=51;CA=0;DP=492
+1	4637510	.	TAAA	TA	18	PASS	AF=0.0428857;HP=9;NF=13;NR=6;NS=52;CA=0;DP=456
+1	4639728	.	GGTGTGTGTGTGTGTG	GG	56	PASS	AF=0.223403;HP=3;NF=39;NR=66;NS=51;CA=0;DP=466
+1	4645583	rs59275910;-/G,venter	AG	AGG	100	PASS	AF=0.999998;HP=1;DB;NF=41;NR=59;NS=51;CA=0;DP=416
+1	4649824	.	CTT	CT	100	PASS	AF=0.0615007;HP=2;NF=3;NR=3;NS=52;CA=0;DP=371
+1	4653490	.	GAG	GG	19	PASS	AF=0.016501;HP=1;NF=1;NR=2;NS=52;CA=0;DP=448
+1	4654099	rs3086606;-/GTCTGCA,mills	CC	CCAGTCTGC	100	PASS	AF=0.299705;HP=2;DB;NF=11;NR=10;NS=52;CA=0;DP=440
+1	4655877	rs58828516;-/G	TG	TGG	100	PASS	AF=0.083803;HP=6;DB;NF=13;NR=14;NS=52;CA=0;DP=553
+1	4656096	rs34592768;-/G,mills	TGG	TG	100	PASS	AF=0.0586852;HP=2;DB;NF=6;NR=4;NS=52;CA=0;DP=486
+1	4656943	.	GGTGTG	GG	53	PASS	AF=0.0156574;HP=2;NF=15;NR=18;NS=52;CA=0;DP=804
+1	4668803	.	CTT	CT	39	PASS	AF=0.0748695;HP=8;NF=8;NR=6;NS=52;CA=0;DP=401
+1	4670089	rs34058244;-/AC,venter	GA	GACA	100	PASS	AF=0.471432;HP=1;DB;NF=47;NR=39;NS=52;CA=0;DP=789
+1	4670383	rs35737766;-/TCAC,watson	ACACTC	AC	100	PASS	AF=0.331554;HP=1;DB;NF=20;NR=35;NS=52;CA=0;DP=609
+1	4676654	.	AGATG	AG	10	PASS	AF=0.011049;HP=1;NF=15;NR=18;NS=52;CA=0;DP=617
+1	4684590	.	TCCTGCACCTGCTGTGCCCCTGGCTCCCAGCACC	TC	100	PASS	AF=0.0368566;HP=2;NF=13;NR=7;NS=52;CA=0;DP=543
+1	4689505	.	TC	TCTGTCCTCTCTCCTAGCTCTGGTGCCCTGAGATGC	100	PASS	AF=0.355136;HP=1;NF=2;NR=3;NS=52;CA=0;DP=597
+1	4693342	rs3835539;-/TTCA	CC	CCATTC	100	PASS	AF=0.307703;HP=2;DB;NF=60;NR=61;NS=52;CA=0;DP=594
+1	4695582	venter	TGTGAGG	TG	100	PASS	AF=0.630317;HP=1;NF=17;NR=29;NS=52;CA=0;DP=408
+1	4700273	.	GCCT	GT	51	PASS	AF=0.154012;HP=2;NF=3;NR=3;NS=52;CA=0;DP=402
+1	4700727	rs34897087;-/A,venter	CG	CGG	13	PASS	AF=0.0702045;HP=8;DB;NF=22;NR=6;NS=51;CA=M;DP=305
+1	4702014	rs34592315;-/AA,venter	TAAA	TA	100	PASS	AF=0.183045;HP=3;DB;NF=9;NR=20;NS=52;CA=0;DP=551
+1	4702135	.	GCC	GC	100	PASS	AF=0.132917;HP=5;NF=18;NR=10;NS=52;CA=0;DP=561
+1	4702842	rs3835540;-/GAC	TGACG	TG	100	PASS	AF=0.333162;HP=1;DB;NF=25;NR=19;NS=52;CA=0;DP=517
+1	4703849	rs35422518;-/TCTCCAGGC,mills,venter,watson	AGCTCTCCAGG	AG	100	PASS	AF=0.461699;HP=1;DB;NF=52;NR=39;NS=52;CA=0;DP=558
+1	4704242	.	ATT	AT	100	PASS	AF=0.124811;HP=6;NF=16;NR=12;NS=52;CA=0;DP=518
+1	4704545	.	GCACAC	GC	43	PASS	AF=0.374122;HP=1;NF=68;NR=46;NS=52;CA=0;DP=586
+1	4709952	rs55677440;-/GT	TT	TTGT	100	PASS	AF=0.111566;HP=3;DB;NF=37;NR=55;NS=52;CA=0;DP=757
+1	4712998	rs35177072;-/CTC,mills,venter,watson	TCTCC	TC	100	PASS	AF=0.409205;HP=1;DB;NF=23;NR=30;NS=52;CA=0;DP=527
+1	4714785	rs3835541;-/A,venter	CAA	CA	100	PASS	AF=0.207747;HP=2;DB;NF=12;NR=9;NS=52;CA=0;DP=525
+1	4715739	.	GT	GTT	100	PASS	AF=0.0593871;HP=1;NF=4;NR=4;NS=52;CA=0;DP=486
+1	4717874	rs33969697;-/C,mills,venter	TCA	TA	100	PASS	AF=0.644689;HP=1;DB;NF=37;NR=47;NS=52;CA=0;DP=521
+1	4720164	rs5772181;-/GA,mills,venter,watson	TG	TGAG	100	PASS	AF=0.660601;HP=1;DB;NF=60;NR=61;NS=52;CA=0;DP=723
+1	4725394	venter	AG	AGAGAGACATGAGTGAAGAAGG	100	PASS	AF=0.486541;HP=1;NF=34;NR=40;NS=52;CA=0;DP=600
+1	4726136	rs35816653;-/T,venter	CT	CTT	100	PASS	AF=0.325542;HP=7;DB;NF=25;NR=33;NS=52;CA=0;DP=561
+1	4728249	rs35594902;-/TGTT	CT	CTGTTT	100	PASS	AF=0.236832;HP=1;DB;NF=16;NR=16;NS=52;CA=0;DP=595
+1	4730619	rs56688128;-/AAGGC,venter,watson	ACAAGGC	AC	100	PASS	AF=0.197783;HP=1;DB;NF=14;NR=10;NS=52;CA=0;DP=450
+1	4738491	.	ATCTCTCTCTCTCTCTCTCTCT	AT	100	PASS	AF=0.109332;HP=1;NF=34;NR=36;NS=52;CA=0;DP=556
+1	4743143	rs34960969;-/T,venter	ATT	AT	100	PASS	AF=0.443382;HP=2;DB;NF=27;NR=29;NS=51;CA=0;DP=521
+1	4750482	.	AC	ACC	44	PASS	AF=0.0773717;HP=1;NF=1;NR=10;NS=52;CA=0;DP=532
+1	4751808	.	CC	CTC	100	PASS	AF=0.287743;HP=6;NF=22;NR=19;NS=52;CA=0;DP=549
+1	4753639	rs56735073;-/G	AG	AGG	100	PASS	AF=0.354197;HP=6;DB;NF=26;NR=25;NS=52;CA=0;DP=499
+1	4756338	.	TGG	TG	100	PASS	AF=0.145276;HP=6;NF=12;NR=22;NS=52;CA=0;DP=505
+1	4756654	.	CTGT	CT	100	PASS	AF=0.0253358;HP=1;NF=2;NR=3;NS=52;CA=0;DP=502
+1	4768227	rs34482713;-/A,venter	CAC	CC	100	PASS	AF=0.624286;HP=1;DB;NF=16;NR=29;NS=52;CA=0;DP=382
+1	4769408	rs3030792;-/CA,venter	TC	TCAC	100	PASS	AF=0.564397;HP=1;DB;NF=37;NR=45;NS=51;CA=0;DP=550
+1	4771107	rs59952959;-/TTATCGGTGGTTT	ATTATCGGTGGTTTC	AC	100	PASS	AF=0.43732;HP=2;DB;NF=24;NR=26;NS=52;CA=0;DP=437
+1	4771150	.	AGGCAGAGGATTTAGGGGGCAGTGAAACTA	AA	100	PASS	AF=0.365014;HP=2;NF=25;NR=17;NS=51;CA=0;DP=446
+1	4773228	.	AACA	AA	100	PASS	AF=0.358433;HP=4;NF=49;NR=37;NS=51;CA=0;DP=403
+1	4779293	rs35799766;-/A,venter	GAA	GA	100	PASS	AF=0.620558;HP=4;DB;NF=40;NR=44;NS=52;CA=0;DP=539
+1	4783405	.	TACGTATATACATATACA	TA	100	PASS	AF=0.346752;HP=1;NF=20;NR=40;NS=52;CA=0;DP=331
+1	4784171	.	TA	TAAGA	100	PASS	AF=0.058761;HP=2;NF=4;NR=4;NS=52;CA=0;DP=522
+1	4787548	rs35350740;-/CA,mills	AACA	AA	100	PASS	AF=0.294238;HP=3;DB;NF=43;NR=40;NS=52;CA=0;DP=565
+1	4790642	rs5772184;-/T,venter	ATT	AT	100	PASS	AF=0.360239;HP=10;DB;NF=23;NR=25;NS=52;CA=0;DP=544
+1	4794867	.	AATA	AA	59	PASS	AF=0.0541594;HP=2;NF=6;NR=24;NS=52;CA=0;DP=316
+1	4794934	.	CT	CTCTCTTT	21	PASS	AF=0.322809;HP=1;NF=7;NR=9;NS=50;CA=M;DP=241
+1	4800829	rs35005833;-/C,venter	TC	TCC	100	PASS	AF=0.404199;HP=5;DB;NF=48;NR=15;NS=52;CA=0;DP=479
+1	4806476	.	GC	GCC	100	PASS	AF=0.0973173;HP=6;NF=8;NR=8;NS=52;CA=M;DP=398
+1	4808450	rs34573971;-/A,venter	GAA	GA	100	PASS	AF=0.332411;HP=9;DB;NF=26;NR=22;NS=52;CA=0;DP=474
+1	4809140	rs60726929;-/TCCA,venter,watson	TC	TCATCC	100	PASS	AF=0.348085;HP=1;DB;NF=49;NR=32;NS=52;CA=0;DP=579
+1	4810276	rs3030822;-/TAGT,watson	ATAGTT	AT	100	PASS	AF=0.242205;HP=1;DB;NF=27;NR=13;NS=52;CA=0;DP=582
+1	4831434	.	TA	TACCACACACACA	100	PASS	AF=0.49717;HP=1;NF=18;NR=17;NS=52;CA=0;DP=675
+1	4831567	rs34042090;-/CA	CCAC	CC	100	PASS	AF=0.535527;HP=4;DB;NF=52;NR=45;NS=52;CA=0;DP=738
+1	4833596	rs35226825;-/T	AT	ATT	100	PASS	AF=0.237481;HP=5;DB;NF=19;NR=19;NS=52;CA=0;DP=498
+1	4839967	.	TCCTGCCAGCCGGGGGC	TC	100	PASS	AF=0.0394386;HP=2;NF=5;NR=2;NS=52;CA=0;DP=565
+1	4840948	rs59349393;-/AAACCACATCCCTTGAACT	GACTAAACCACATCCCTTGAA	GA	100	PASS	AF=0.144437;HP=1;DB;NF=16;NR=17;NS=52;CA=0;DP=578
+1	4846284	rs36118323;-/T,venter	CT	CTT	100	PASS	AF=0.130437;HP=7;DB;NF=12;NR=15;NS=52;CA=0;DP=415
+1	4855247	venter	GA	GACACA	100	PASS	AF=0.301971;HP=1;NF=19;NR=3;NS=52;CA=0;DP=635
+1	4864897	venter	AT	ATT	100	PASS	AF=0.215684;HP=6;NF=17;NR=20;NS=52;CA=0;DP=450
+1	4865373	rs34273857;-/A,venter	CA	CAA	100	PASS	AF=0.169967;HP=6;DB;NF=17;NR=15;NS=52;CA=0;DP=533