woldlab.caltech.edu Git - pysam.git/commit

author	Diane Trout <diane@caltech.edu>
	Tue, 18 Dec 2012 19:53:08 +0000 (11:53 -0800)
committer	Diane Trout <diane@caltech.edu>
	Tue, 18 Dec 2012 19:53:08 +0000 (11:53 -0800)
commit	920cc77ed26707a0d92f9e436121b61d84bde627
tree	1eb3089b79e640226fec5b3573a448f85fe0baf4	tree \| snapshot
parent	8ab946e230447a6fe686edabc5e3cfa445da1721	commit \| diff

Imported Upstream version 0.7

62 files changed:

MANIFEST.in		diff \| blob \| history
PKG-INFO		diff \| blob \| history
THANKS		diff \| blob \| history
distribute_setup.py	[new file with mode: 0644]	blob
ez_setup.py	[deleted file]	blob \| history
pysam.egg-info/PKG-INFO		diff \| blob \| history
pysam.egg-info/SOURCES.txt		diff \| blob \| history
pysam/TabProxies.c		diff \| blob \| history
pysam/TabProxies.pxd		diff \| blob \| history
pysam/TabProxies.pyx		diff \| blob \| history
pysam/VCF.py	[new file with mode: 0644]	blob
pysam/__init__.py		diff \| blob \| history
pysam/csamtools.c		diff \| blob \| history
pysam/csamtools.pxd		diff \| blob \| history
pysam/csamtools.pyx		diff \| blob \| history
pysam/ctabix.c		diff \| blob \| history
pysam/ctabix.pxd		diff \| blob \| history
pysam/ctabix.pyx		diff \| blob \| history
pysam/cvcf.c		diff \| blob \| history
pysam/cvcf.pyx		diff \| blob \| history
pysam/pysam_util.c		diff \| blob \| history
pysam/pysam_util.h		diff \| blob \| history
pysam/version.py		diff \| blob \| history
samtools/ksort.h		diff \| blob \| history
setup.py		diff \| blob \| history
tabix/bgzf.c.pysam.c		diff \| blob \| history
tabix/bgzf.h		diff \| blob \| history
tabix/bgzip.c.pysam.c		diff \| blob \| history
tabix/index.c.pysam.c		diff \| blob \| history
tests/Makefile		diff \| blob \| history
tests/example.bed.gz	[new file with mode: 0644]	blob
tests/example.bed.gz.tbi	[new file with mode: 0644]	blob
tests/example.vcf40	[new file with mode: 0644]	blob
tests/example_btag.sam	[new file with mode: 0644]	blob
tests/example_empty_header.bam	[new file with mode: 0644]	blob
tests/example_unmapped_reads_no_sq.sam	[new file with mode: 0644]	blob
tests/example_user_header.sam	[new file with mode: 0644]	blob
tests/issue100.bam	[new file with mode: 0644]	blob
tests/pysam_test.py		diff \| blob \| history
tests/tabix_test.py		diff \| blob \| history
tests/tag_bug.bam	[new file with mode: 0644]	blob
tests/vcf-examples/10.vcf	[new file with mode: 0644]	blob
tests/vcf-examples/11.vcf	[new file with mode: 0644]	blob
tests/vcf-examples/12.vcf	[new file with mode: 0644]	blob
tests/vcf-examples/13.vcf	[new file with mode: 0644]	blob
tests/vcf-examples/15.vcf	[new file with mode: 0644]	blob
tests/vcf-examples/16.vcf	[new file with mode: 0644]	blob
tests/vcf-examples/18.vcf	[new file with mode: 0644]	blob
tests/vcf-examples/2.vcf	[new file with mode: 0644]	blob
tests/vcf-examples/20.vcf	[new file with mode: 0644]	blob
tests/vcf-examples/21.vcf	[new file with mode: 0644]	blob
tests/vcf-examples/22.vcf	[new file with mode: 0644]	blob
tests/vcf-examples/23.vcf	[new file with mode: 0644]	blob
tests/vcf-examples/24.vcf	[new file with mode: 0644]	blob
tests/vcf-examples/3.vcf	[new file with mode: 0644]	blob
tests/vcf-examples/4.vcf	[new file with mode: 0644]	blob
tests/vcf-examples/5.vcf	[new file with mode: 0644]	blob
tests/vcf-examples/6.vcf	[new file with mode: 0644]	blob
tests/vcf-examples/7.vcf	[new file with mode: 0644]	blob
tests/vcf-examples/8.vcf	[new file with mode: 0644]	blob
tests/vcf-examples/9.vcf	[new file with mode: 0644]	blob
tests/vcf-examples/issue85.vcf	[new file with mode: 0644]	blob

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