From 1880a0e7e45766a58e2b42c59d6993cb543e4538 Mon Sep 17 00:00:00 2001
From: Diane Trout <diane@caltech.edu>
Date: Fri, 19 Nov 2010 12:15:33 -0800
Subject: [PATCH] Update changes to debian configuration for 0.3

---
 debian/README.source       |  9 ---------
 debian/changelog           |  6 ++++++
 debian/control             |  2 +-
 debian/pysam.debhelper.log | 33 ---------------------------------
 debian/rules               |  2 +-
 5 files changed, 8 insertions(+), 44 deletions(-)
 delete mode 100644 debian/README.source
 delete mode 100644 debian/pysam.debhelper.log

diff --git a/debian/README.source b/debian/README.source
deleted file mode 100644
index 575b3db..0000000
--- a/debian/README.source
+++ /dev/null
@@ -1,9 +0,0 @@
-pysam for Debian
-----------------
-
-<this file describes information about the source package, see Debian policy
-manual section 4.14. You WILL either need to modify or delete this file>
-
-
-
-
diff --git a/debian/changelog b/debian/changelog
index daaa8af..d05bdaa 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,9 @@
+pysam (0.3-1) maverick; urgency=low
+
+  * Imported Upstream version 0.3
+
+ -- Diane Trout <diane@caltech.edu>  Fri, 19 Nov 2010 12:10:25 -0800
+
 pysam (0.2-1~karmic) karmic; urgency=low
 
   * Initial release 
diff --git a/debian/control b/debian/control
index 4128d0f..f606101 100644
--- a/debian/control
+++ b/debian/control
@@ -2,7 +2,7 @@ Source: pysam
 Section: science
 Priority: extra
 Maintainer: Diane Trout <diane@caltech.edu>
-Build-Depends: cdbs, debhelper (>= 7), python-all-dev (>= 2.3.5-11), python-central (>= 0.5.6), python-setuptools (>= 0.6b3), python-pyrex (>= 0.9.8), zlib1g-dev (>= 1.2.3)
+Build-Depends: cdbs, debhelper (>= 7), python-all-dev (>= 2.3.5-11), python-central (>= 0.5.6), python-setuptools (>= 0.6b3), python-pyrex (>= 0.9.8), cython (>= 0.11), zlib1g-dev (>= 1.2.3)
 Standards-Version: 3.8.4
 XS-Python-Version: >=2.5, <<2.7
 Homepage: http://code.google.com/p/pysam/ 
diff --git a/debian/pysam.debhelper.log b/debian/pysam.debhelper.log
deleted file mode 100644
index bd3417d..0000000
--- a/debian/pysam.debhelper.log
+++ /dev/null
@@ -1,33 +0,0 @@
-dh_installdirs
-dh_installdirs
-dh_installdocs
-dh_installexamples
-dh_installman
-dh_installinfo
-dh_installmenu
-dh_installcron
-dh_installinit
-dh_installdebconf
-dh_installemacsen
-dh_installcatalogs
-dh_installpam
-dh_installlogrotate
-dh_installlogcheck
-dh_installchangelogs
-dh_installudev
-dh_lintian
-dh_install
-dh_link
-dh_installmime
-dh_pycentral
-dh_strip
-dh_compress
-dh_fixperms
-dh_makeshlibs
-dh_installdeb
-dh_perl
-dh_shlibdeps
-dh_gencontrol
-dh_link
-dh_md5sums
-dh_builddeb
diff --git a/debian/rules b/debian/rules
index 2f0cc12..24f4ebc 100755
--- a/debian/rules
+++ b/debian/rules
@@ -3,7 +3,7 @@
 DEB_PYTHON_SYSTEM=pycentral
 
 clean::
-	rm -f pysam/csamtools.c
+	rm -f pysam/csamtools.c pysam/ctabix.c
 
 include /usr/share/cdbs/1/rules/debhelper.mk
 include /usr/share/cdbs/1/class/python-distutils.mk
-- 
2.30.2