1 samtools (0.1.16-1) unstable; urgency=low
3 * New upstream release, implementing SAM Spec v1.4.
4 * Distribute sam.h and the other headers in /usr/include/samtools.
5 Closes: #625622, #626044, LP: #690997.
7 -- Charles Plessy <plessy@debian.org> Thu, 19 May 2011 13:24:25 +0900
9 samtools (0.1.15-1) unstable; urgency=low
11 * New upstream release.
12 * Incremented Standards-Version to reflect conformance with Policy 3.9.2
13 (debian/control, no changes needed).
14 * debian/watch directly interrogates and downloads froms SourceForge.
16 -- Charles Plessy <plessy@debian.org> Tue, 12 Apr 2011 19:44:41 +0900
18 samtools (0.1.14-1) unstable; urgency=low
20 * New upstream release.
22 -- Charles Plessy <plessy@debian.org> Tue, 29 Mar 2011 13:13:54 +0900
24 samtools (0.1.13-1) unstable; urgency=low
26 * New upstream release:
27 - backward incompatible with VCF/BCF generated by samtools older
28 than r921 inclusive (0.1.12a is r862);
29 - buildable with with ld --as-needed (Closes: #606004);
30 - the helper tool bcf-fix.pl was removed.
31 * Install the manual page of bcftools (debian/rules,
32 debian/samtools.manpages). Closes: #616025.
34 -- Charles Plessy <plessy@debian.org> Wed, 02 Mar 2011 13:54:34 +0900
36 samtools (0.1.12a-1) unstable; urgency=low
38 * New upstream release.
39 * Use bzip2 compression for the binary packages (debian/rules).
40 * Incremented debhelper compatibility level to 8, in case ‘--‘ is not
41 available in earlier versions (debian/compat, debian/control).
43 -- Charles Plessy <plessy@debian.org> Fri, 03 Dec 2010 13:32:21 +0900
45 samtools (0.1.10-1) unstable; urgency=low
47 * New upstream release.
49 -- Charles Plessy <plessy@debian.org> Wed, 17 Nov 2010 20:32:40 +0900
51 samtools (0.1.9-1) unstable; urgency=low
53 * New upstream release, and new program: bcftools.
54 * debian/rules, debian/samtools.install: install bcftools, its manpage,
55 and bcf-fix.pl and vcfutils.pl.
56 * debian/samtools.examples, debian/rules: install and clean new examples.
57 * Incremented Standards-Version to reflect conformance with Policy 3.9.1
58 (debian/control, no changes needed).
59 * Updated and reformatted debian/copyright according to latest DEP-5 draft.
61 -- Charles Plessy <plessy@debian.org> Mon, 01 Nov 2010 20:06:32 +0900
63 samtools (0.1.8-1) unstable; urgency=low
65 * New upstream release.
66 * Updated the VCS fields to the current Git repository (debian/control).
67 * Install python scripts in usr/share/samtools, and suggest python
68 (debian/samtools.install, debian/rules, debian/control).
69 * Incremented Standards-Version to reflect conformance with Policy 3.9.0
70 (debian/control, no changes needed).
71 * Added notes on how the package is tested (debian/README.Debian).
73 -- Charles Plessy <plessy@debian.org> Wed, 14 Jul 2010 14:08:59 +0900
75 samtools (0.1.7a~dfsg-1) unstable; urgency=low
77 * New upstream release: new script sam2vcf.pl, and many other changes.
78 * Package converted to the format ‘3.0 (quilt)’ (debian/source/format).
79 * Wrote a manual page for razip (debian/razip.1).
80 * Better clean the example directory to make the source package
81 buildable twice in a row (debian/rules).
83 -- Charles Plessy <plessy@debian.org> Tue, 17 Nov 2009 21:38:24 +0900
85 samtools (0.1.6~dfsg-1) unstable; urgency=low
87 * New upstream release.
88 * Upstream sources repackaged to remove the win32 directory:
89 - The removal was done with git-import-orig in a parallel Git repository,
90 and the corresponding debian/gbp.conf file was added to this package.
91 - Mangled the ~dfsg string of the Debian version in debian/watch.
92 - Added a debian/README.source file and explanations in debian/copyright.
94 -- Charles Plessy <plessy@debian.org> Mon, 14 Sep 2009 21:58:36 +0900
96 samtools (0.1.5c-2) unstable; urgency=low
98 * Rebuilt with -fPIC (debian/rules, README.Debian).
99 * Small corrections to the description from upstream (debian/changelog).
100 * Incremented Standards-Version to reflect conformance with Policy 3.8.3
103 -- Charles Plessy <plessy@debian.org> Thu, 03 Sep 2009 19:29:40 +0900
105 samtools (0.1.5c-1) unstable; urgency=low
107 * Initial release (Closes: #540453)
109 -- Charles Plessy <plessy@debian.org> Sun, 16 Aug 2009 14:38:20 +0900