1 samtools (0.1.17-1) UNRELEASED; urgency=low
3 * New upstream release 0.1.17 (6 July, 2011).
4 * bcftools.1 and samtools.1 merged (debian/rules, debian/samtools.manpages).
5 * Patched the example makefile to not use samtools pileup, deprecated.
6 (debian/control, debian/rules, debian/patches/series,
7 debian/patches/no-pileup-tests.patch)
9 -- Charles Plessy <plessy@debian.org> Mon, 11 Jul 2011 20:22:01 +0900
11 samtools (0.1.16-1) unstable; urgency=low
13 * New upstream release, implementing SAM Spec v1.4.
14 * Distribute sam.h and the other headers in /usr/include/samtools.
15 Closes: #625622, #626044, LP: #690997.
17 -- Charles Plessy <plessy@debian.org> Thu, 19 May 2011 13:24:25 +0900
19 samtools (0.1.15-1) unstable; urgency=low
21 * New upstream release.
22 * Incremented Standards-Version to reflect conformance with Policy 3.9.2
23 (debian/control, no changes needed).
24 * debian/watch directly interrogates and downloads froms SourceForge.
26 -- Charles Plessy <plessy@debian.org> Tue, 12 Apr 2011 19:44:41 +0900
28 samtools (0.1.14-1) unstable; urgency=low
30 * New upstream release.
32 -- Charles Plessy <plessy@debian.org> Tue, 29 Mar 2011 13:13:54 +0900
34 samtools (0.1.13-1) unstable; urgency=low
36 * New upstream release:
37 - backward incompatible with VCF/BCF generated by samtools older
38 than r921 inclusive (0.1.12a is r862);
39 - buildable with with ld --as-needed (Closes: #606004);
40 - the helper tool bcf-fix.pl was removed.
41 * Install the manual page of bcftools (debian/rules,
42 debian/samtools.manpages). Closes: #616025.
44 -- Charles Plessy <plessy@debian.org> Wed, 02 Mar 2011 13:54:34 +0900
46 samtools (0.1.12a-1) unstable; urgency=low
48 * New upstream release.
49 * Use bzip2 compression for the binary packages (debian/rules).
50 * Incremented debhelper compatibility level to 8, in case ‘--‘ is not
51 available in earlier versions (debian/compat, debian/control).
53 -- Charles Plessy <plessy@debian.org> Fri, 03 Dec 2010 13:32:21 +0900
55 samtools (0.1.10-1) unstable; urgency=low
57 * New upstream release.
59 -- Charles Plessy <plessy@debian.org> Wed, 17 Nov 2010 20:32:40 +0900
61 samtools (0.1.9-1) unstable; urgency=low
63 * New upstream release, and new program: bcftools.
64 * debian/rules, debian/samtools.install: install bcftools, its manpage,
65 and bcf-fix.pl and vcfutils.pl.
66 * debian/samtools.examples, debian/rules: install and clean new examples.
67 * Incremented Standards-Version to reflect conformance with Policy 3.9.1
68 (debian/control, no changes needed).
69 * Updated and reformatted debian/copyright according to latest DEP-5 draft.
71 -- Charles Plessy <plessy@debian.org> Mon, 01 Nov 2010 20:06:32 +0900
73 samtools (0.1.8-1) unstable; urgency=low
75 * New upstream release.
76 * Updated the VCS fields to the current Git repository (debian/control).
77 * Install python scripts in usr/share/samtools, and suggest python
78 (debian/samtools.install, debian/rules, debian/control).
79 * Incremented Standards-Version to reflect conformance with Policy 3.9.0
80 (debian/control, no changes needed).
81 * Added notes on how the package is tested (debian/README.Debian).
83 -- Charles Plessy <plessy@debian.org> Wed, 14 Jul 2010 14:08:59 +0900
85 samtools (0.1.7a~dfsg-1) unstable; urgency=low
87 * New upstream release: new script sam2vcf.pl, and many other changes.
88 * Package converted to the format ‘3.0 (quilt)’ (debian/source/format).
89 * Wrote a manual page for razip (debian/razip.1).
90 * Better clean the example directory to make the source package
91 buildable twice in a row (debian/rules).
93 -- Charles Plessy <plessy@debian.org> Tue, 17 Nov 2009 21:38:24 +0900
95 samtools (0.1.6~dfsg-1) unstable; urgency=low
97 * New upstream release.
98 * Upstream sources repackaged to remove the win32 directory:
99 - The removal was done with git-import-orig in a parallel Git repository,
100 and the corresponding debian/gbp.conf file was added to this package.
101 - Mangled the ~dfsg string of the Debian version in debian/watch.
102 - Added a debian/README.source file and explanations in debian/copyright.
104 -- Charles Plessy <plessy@debian.org> Mon, 14 Sep 2009 21:58:36 +0900
106 samtools (0.1.5c-2) unstable; urgency=low
108 * Rebuilt with -fPIC (debian/rules, README.Debian).
109 * Small corrections to the description from upstream (debian/changelog).
110 * Incremented Standards-Version to reflect conformance with Policy 3.8.3
113 -- Charles Plessy <plessy@debian.org> Thu, 03 Sep 2009 19:29:40 +0900
115 samtools (0.1.5c-1) unstable; urgency=low
117 * Initial release (Closes: #540453)
119 -- Charles Plessy <plessy@debian.org> Sun, 16 Aug 2009 14:38:20 +0900