4 Maintainer: Debian-Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
6 Uploaders: Charles Plessy <plessy@debian.org>
7 Build-Depends: debhelper (>= 7), cdbs, libncurses5-dev, zlib1g-dev
8 Standards-Version: 3.8.3
9 Homepage: http://samtools.sourceforge.net
10 Vcs-Browser: http://git.debian.org/?p=debian-med/samtools.git
11 Vcs-Git: git://git.debian.org/debian-med/samtools.git
15 Depends: ${shlibs:Depends}, ${misc:Depends}
16 Description: processing sequence alignments in SAM and BAM formats
17 Samtools is a set of utilities that manipulate nucleotide sequence alignments
18 in the binary BAM format. It imports from and exports to the ascii SAM
19 (Sequence Alignment/Map) format, does sorting, merging and indexing, and allows
20 to retrieve reads in any regions swiftly. It is designed to work on a stream,
21 and is able to open a BAM (not SAM) file on a remote FTP or HTTP server.
26 Depends: ${shlibs:Depends}, ${misc:Depends}
27 Description: manipulates nucleotide sequence alignments in BAM or SAM format
28 The BAM library provides I/O and various operations on manipulating nucleotide
29 sequence alignments in the BAM (Binary Alignment/Mapping) or SAM (Sequence
30 Alignment/Map) format. It now supports importing from or exporting to SAM,
31 sorting, merging, generating pileup, and quickly retrieval of reads overlapped
32 with a specified region.