2 Source: http://qa.debian.org/watch/sf.php/samtools/samtools-0.1.9.tar.bz2
3 Copyright: © 2008–2010, Genome Research Ltd. (GRL)
5 Permission is hereby granted, free of charge, to any person obtaining a copy
6 of this software and associated documentation files (the "Software"), to deal
7 in the Software without restriction, including without limitation the rights
8 to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
9 copies of the Software, and to permit persons to whom the Software is
10 furnished to do so, subject to the following conditions:
12 The above copyright notice and this permission notice shall be included in
13 all copies or substantial portions of the Software.
15 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
16 IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
17 FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
18 AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
19 LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
20 OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
24 Copyright: © 2010 Broad Institute
27 Files: misc/export2sam.pl
28 Copyright: © 2008–2009, Genome Research Ltd.
29 Copyright: © 2010 Illumina, Inc.
32 Files: bgzf.*, bgzip.c
33 Copyright: © 2008 Broad Institute / Massachusetts Institute of Technology
38 Name: RAZF : Random Access compressed(Z) File
39 Copyright: 2008, Jue Ruan <ruanjue@gmail.com>, Heng Li <lh3@sanger.ac.uk>
40 License: Similar to NetBSD license.
41 Redistribution and use in source and binary forms, with or without
42 modification, are permitted provided that the following conditions
44 1. Redistributions of source code must retain the above copyright
45 notice, this list of conditions and the following disclaimer.
46 2. Redistributions in binary form must reproduce the above copyright
47 notice, this list of conditions and the following disclaimer in the
48 documentation and/or other materials provided with the distribution.
50 THIS SOFTWARE IS PROVIDED BY THE AUTHOR AND CONTRIBUTORS ``AS IS'' AND
51 ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
52 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
53 ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR OR CONTRIBUTORS BE LIABLE
54 FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
55 DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS
56 OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
57 HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
58 LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
59 OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF
64 This code implements the MD5 message-digest algorithm.
65 The algorithm is due to Ron Rivest. This code was
66 written by Colin Plumb in 1993, no copyright is claimed.
67 This code is in the public domain; do with it what you wish.
69 Equivalent code is available from RSA Data Security, Inc.
70 This code has been tested against that, and is equivalent,
71 except that you don't need to include two pages of legalese
74 To compute the message digest of a chunk of bytes, declare an
75 MD5Context structure, pass it to MD5Init, call MD5Update as
76 needed on buffers full of bytes, and then call MD5Final, which
77 will fill a supplied 16-byte array with the digest.
79 Files: win32/xcurses.h
80 License: Public Domain
81 This file is part of PDCurses (http://pdcurses.sourceforge.net/),
82 which is in the public domain.
85 Copyright: © 1995-2005 Jean-loup Gailly and Mark Adler
87 This software is provided 'as-is', without any express or implied
88 warranty. In no event will the authors be held liable for any damages
89 arising from the use of this software.
91 Permission is granted to anyone to use this software for any purpose,
92 including commercial applications, and to alter it and redistribute it
93 freely, subject to the following restrictions:
95 1. The origin of this software must not be misrepresented; you must not
96 claim that you wrote the original software. If you use this software
97 in a product, an acknowledgment in the product documentation would be
98 appreciated but is not required.
99 2. Altered source versions must be plainly marked as such, and must not be
100 misrepresented as being the original software.
101 3. This notice may not be removed or altered from any source distribution.
103 Jean-loup Gailly Mark Adler
104 jloup@gzip.org madler@alumni.caltech.edu