1 Machine-readable license summary, see ‘http://dep.debian.net/deps/dep5/’.
4 Contact : SAMtools mailing list <samtools-help@lists.sourceforge.net>
5 Source : http://downloads.sourceforge.net/sourceforge/samtools/samtools-0.1.5c.tar.bz2
7 Copyright : © 2008–2009, Genome Research Ltd.
10 Permission is hereby granted, free of charge, to any person obtaining a copy
11 of this software and associated documentation files (the "Software"), to deal
12 in the Software without restriction, including without limitation the rights
13 to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
14 copies of the Software, and to permit persons to whom the Software is
15 furnished to do so, subject to the following conditions:
17 The above copyright notice and this permission notice shall be included in
18 all copies or substantial portions of the Software.
20 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
21 IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
22 FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
23 AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
24 LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
25 OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
28 Files : bgzf.*, bgzip.c
29 Copyright : © 2008 Broad Institute / Massachusetts Institute of Technology
32 The license of the above files have been confirmed upstream and their headers
33 will be corrected in the next release. See:
34 http://samtools.svn.sourceforge.net/viewvc/samtools?view=rev&revision=441
38 Name : RAZF : Random Access compressed(Z) File
39 Copyright : 2008, Jue Ruan <ruanjue@gmail.com>, Heng Li <lh3@sanger.ac.uk>
40 License : Similar to NetBSD license.
42 Redistribution and use in source and binary forms, with or without
43 modification, are permitted provided that the following conditions
45 1. Redistributions of source code must retain the above copyright
46 notice, this list of conditions and the following disclaimer.
47 2. Redistributions in binary form must reproduce the above copyright
48 notice, this list of conditions and the following disclaimer in the
49 documentation and/or other materials provided with the distribution.
51 THIS SOFTWARE IS PROVIDED BY THE AUTHOR AND CONTRIBUTORS ``AS IS'' AND
52 ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
53 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
54 ARE DISCLAIMED. IN NO EVENT SHALL THE AUTHOR OR CONTRIBUTORS BE LIABLE
55 FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
56 DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS
57 OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
58 HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
59 LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
60 OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF
65 Name : MD5 Message Digest Algorithm
66 Copyright : © 1990, RSA Data Security, Inc.
69 License to copy and use this software is granted provided that
70 it is identified as the "RSA Data Security, Inc. MD5 Message
71 Digest Algorithm" in all material mentioning or referencing this
72 software or this function.
74 License is also granted to make and use derivative works
75 provided that such works are identified as "derived from the RSA
76 Data Security, Inc. MD5 Message Digest Algorithm" in all
77 material mentioning or referencing the derived work.
79 RSA Data Security, Inc. makes no representations concerning
80 either the merchantability of this software or the suitability
81 of this software for any particular purpose. It is provided "as
82 is" without express or implied warranty of any kind.
84 These notices must be retained in any copies of any part of this
85 documentation and/or software.
87 The above source files for MD5 support will be replaced in the next SAMtools
88 release by the public domain implementation of ‘http://www.fourmilab.ch/md5/’.