debian/rules

   1 #!/usr/bin/make -f
   2
   3 include /usr/share/cdbs/1/rules/debhelper.mk
   4 include /usr/share/cdbs/1/class/makefile.mk
   5
   6 CFLAGS += -fPIC
   7
   8 DEB_MAKE_BUILD_TARGET = all all-recur razip lib
   9 DEB_MAKE_CHECK_TARGET = -C examples all
  10
  11 DEB_DH_BUILDDEB_ARGS = -- -Z=bzip2
  12
  13 clean::
  14         $(RM) examples/calDepth examples/ex1.bam examples/ex1.bam.bai examples/ex1.fa.fai examples/ex1.glf examples/ex1.glfview.gz examples/ex1.pileup.gz examples/ex1a.bam examples/ex1b.bam examples/ex1f-rmduppe.bam examples/ex1f-rmdupse.bam examples/ex1f.bam examples/ex1f.rg examples/ex1.bcf
  15
  16 binary-install/samtools::
  17         install -m 644 bcftools/README $(CURDIR)/debian/samtools/usr/share/doc/samtools/README.bcftools
  18
  19 binary-fixup/samtools::
  20         sed -i 's|^#!/software/bin/python|#!/usr/bin/python|' $(CURDIR)/debian/samtools/usr/share/samtools/varfilter.py