samtools (0.1.18-1) unstable; urgency=low [b990d9d3] New upstream release. [d59366b9] Updated copyright statements. [aa08abe5] Compress binary packages with xz. [9a36c994] Added a DEP 3 header to debian/patches/no-pileup-tests.patch. -- Charles Plessy Tue, 06 Sep 2011 16:52:04 +0900 samtools (0.1.17-1) unstable; urgency=low * New upstream release 0.1.17 (6 July, 2011). * bcftools.1 and samtools.1 merged (debian/rules, debian/samtools.manpages). * Patched the example makefile to not use samtools pileup, deprecated. (debian/control, debian/rules, debian/patches/series, debian/patches/no-pileup-tests.patch) -- Charles Plessy Mon, 11 Jul 2011 21:04:30 +0900 samtools (0.1.16-1) unstable; urgency=low * New upstream release, implementing SAM Spec v1.4. * Distribute sam.h and the other headers in /usr/include/samtools. Closes: #625622, #626044, LP: #690997. -- Charles Plessy Thu, 19 May 2011 13:24:25 +0900 samtools (0.1.15-1) unstable; urgency=low * New upstream release. * Incremented Standards-Version to reflect conformance with Policy 3.9.2 (debian/control, no changes needed). * debian/watch directly interrogates and downloads froms SourceForge. -- Charles Plessy Tue, 12 Apr 2011 19:44:41 +0900 samtools (0.1.14-1) unstable; urgency=low * New upstream release. -- Charles Plessy Tue, 29 Mar 2011 13:13:54 +0900 samtools (0.1.13-1) unstable; urgency=low * New upstream release: - backward incompatible with VCF/BCF generated by samtools older than r921 inclusive (0.1.12a is r862); - buildable with with ld --as-needed (Closes: #606004); - the helper tool bcf-fix.pl was removed. * Install the manual page of bcftools (debian/rules, debian/samtools.manpages). Closes: #616025. -- Charles Plessy Wed, 02 Mar 2011 13:54:34 +0900 samtools (0.1.12a-1) unstable; urgency=low * New upstream release. * Use bzip2 compression for the binary packages (debian/rules). * Incremented debhelper compatibility level to 8, in case ‘--‘ is not available in earlier versions (debian/compat, debian/control). -- Charles Plessy Fri, 03 Dec 2010 13:32:21 +0900 samtools (0.1.10-1) unstable; urgency=low * New upstream release. -- Charles Plessy Wed, 17 Nov 2010 20:32:40 +0900 samtools (0.1.9-1) unstable; urgency=low * New upstream release, and new program: bcftools. * debian/rules, debian/samtools.install: install bcftools, its manpage, and bcf-fix.pl and vcfutils.pl. * debian/samtools.examples, debian/rules: install and clean new examples. * Incremented Standards-Version to reflect conformance with Policy 3.9.1 (debian/control, no changes needed). * Updated and reformatted debian/copyright according to latest DEP-5 draft. -- Charles Plessy Mon, 01 Nov 2010 20:06:32 +0900 samtools (0.1.8-1) unstable; urgency=low * New upstream release. * Updated the VCS fields to the current Git repository (debian/control). * Install python scripts in usr/share/samtools, and suggest python (debian/samtools.install, debian/rules, debian/control). * Incremented Standards-Version to reflect conformance with Policy 3.9.0 (debian/control, no changes needed). * Added notes on how the package is tested (debian/README.Debian). -- Charles Plessy Wed, 14 Jul 2010 14:08:59 +0900 samtools (0.1.7a~dfsg-1) unstable; urgency=low * New upstream release: new script sam2vcf.pl, and many other changes. * Package converted to the format ‘3.0 (quilt)’ (debian/source/format). * Wrote a manual page for razip (debian/razip.1). * Better clean the example directory to make the source package buildable twice in a row (debian/rules). -- Charles Plessy Tue, 17 Nov 2009 21:38:24 +0900 samtools (0.1.6~dfsg-1) unstable; urgency=low * New upstream release. * Upstream sources repackaged to remove the win32 directory: - The removal was done with git-import-orig in a parallel Git repository, and the corresponding debian/gbp.conf file was added to this package. - Mangled the ~dfsg string of the Debian version in debian/watch. - Added a debian/README.source file and explanations in debian/copyright. -- Charles Plessy Mon, 14 Sep 2009 21:58:36 +0900 samtools (0.1.5c-2) unstable; urgency=low * Rebuilt with -fPIC (debian/rules, README.Debian). * Small corrections to the description from upstream (debian/changelog). * Incremented Standards-Version to reflect conformance with Policy 3.8.3 (no changes needed). -- Charles Plessy Thu, 03 Sep 2009 19:29:40 +0900 samtools (0.1.5c-1) unstable; urgency=low * Initial release (Closes: #540453) -- Charles Plessy Sun, 16 Aug 2009 14:38:20 +0900