Source: samtools Section: science Priority: optional Maintainer: Debian Med Packaging Team DM-Upload-Allowed: yes Uploaders: Charles Plessy Build-Depends: debhelper (>= 8), cdbs, libncurses5-dev, zlib1g-dev Standards-Version: 3.9.1 Homepage: http://samtools.sourceforge.net Vcs-Browser: http://git.debian.org/?p=debian-med/samtools.git Vcs-Git: git://git.debian.org/debian-med/samtools.git Package: samtools Architecture: any Depends: ${shlibs:Depends}, ${misc:Depends} Suggests: python Description: processing sequence alignments in SAM and BAM formats Samtools is a set of utilities that manipulate nucleotide sequence alignments in the binary BAM format. It imports from and exports to the ascii SAM (Sequence Alignment/Map) format, does sorting, merging and indexing, and allows to retrieve reads in any regions swiftly. It is designed to work on a stream, and is able to open a BAM (not SAM) file on a remote FTP or HTTP server. Package: libbam-dev Architecture: any Section: libdevel Depends: ${shlibs:Depends}, ${misc:Depends} Description: manipulates nucleotide sequence alignments in BAM or SAM format The BAM library provides I/O and various operations on manipulating nucleotide sequence alignments in the BAM (Binary Alignment/Mapping) or SAM (Sequence Alignment/Map) format. It now supports importing from or exporting to SAM, sorting, merging, generating pileup, and quickly retrieval of reads overlapped with a specified region.