Imported Upstream version 0.1.6~dfsg

[samtools.git] / Makefile

diff --git a/Makefile b/Makefile
index 7bb44694e0ab26f8266bdadddb25075159b8b365..450b3abbb83876089fbf1da30df600431a272a6e 100644 (file)
--- a/Makefile
+++ b/Makefile
@@ -1,8 +1,6 @@
 CC=                    gcc
-CXX=           g++
 CFLAGS=                -g -Wall -O2 #-m64 #-arch ppc
-CXXFLAGS=      $(CFLAGS)
-DFLAGS=                -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE #-D_NO_CURSES
+DFLAGS=                -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE -D_CURSES_LIB=1
 LOBJS=         bgzf.o kstring.o bam_aux.o bam.o bam_import.o sam.o bam_index.o \
                        bam_pileup.o bam_lpileup.o bam_md.o glf.o razf.o faidx.o knetfile.o     \
                        bam_sort.o
@@ -10,9 +8,10 @@ AOBJS=                bam_tview.o bam_maqcns.o bam_plcmd.o sam_view.o \
                        bam_rmdup.o bam_rmdupse.o bam_mate.o bam_stat.o bam_color.o     \
                        bamtk.o
 PROG=          samtools
-INCLUDES=      
+INCLUDES=
 SUBDIRS=       . misc
-LIBPATH=       
+LIBPATH=
+LIBCURSES=     -lcurses # -lXCurses
 
 .SUFFIXES:.c .o
 
@@ -36,9 +35,8 @@ lib:libbam.a
 libbam.a:$(LOBJS)
                $(AR) -cru $@ $(LOBJS)
 
-### For the curses library: comment out `-lcurses' if you do not have curses installed
 samtools:lib $(AOBJS)
-               $(CC) $(CFLAGS) -o $@ $(AOBJS) $(LIBPATH) -lm -lcurses -lz -L. -lbam
+               $(CC) $(CFLAGS) -o $@ $(AOBJS) -lm $(LIBPATH) $(LIBCURSES) -lz -L. -lbam
 
 razip:razip.o razf.o
                $(CC) $(CFLAGS) -o $@ razf.o razip.o -lz