Imported Upstream version 0.1.18

[samtools.git] / bam2bcf.h

diff --git a/bam2bcf.h b/bam2bcf.h
index 958567241936a4c54feae501c725ad77a6e3f1be..4af080c4753b2070192bec5e04e16174ca5bb5f8 100644 (file)
--- a/bam2bcf.h
+++ b/bam2bcf.h
@@ -26,6 +26,7 @@ typedef struct {
        int depth, ori_depth, qsum[4];
        int anno[16];
        float p[25];
        int depth, ori_depth, qsum[4];
        int anno[16];
        float p[25];

+    int mvd[3]; // mean variant distance, number of variant reads, average read length

 } bcf_callret1_t;
 
 typedef struct {
 } bcf_callret1_t;
 
 typedef struct {


@@ -33,6 +34,7 @@ typedef struct {
        int n, n_alleles, shift, ori_ref, unseen;
        int anno[16], depth, ori_depth;
        uint8_t *PL;
        int n, n_alleles, shift, ori_ref, unseen;
        int anno[16], depth, ori_depth;
        uint8_t *PL;

+    float vdb; // variant distance bias

 } bcf_call_t;
 
 #ifdef __cplusplus
 } bcf_call_t;
 
 #ifdef __cplusplus