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Added a DEP 3 header to debian/patches/no-pileup-tests.patch.
[samtools.git]
/
bam2bcf.h
diff --git
a/bam2bcf.h
b/bam2bcf.h
index 958567241936a4c54feae501c725ad77a6e3f1be..4af080c4753b2070192bec5e04e16174ca5bb5f8 100644
(file)
--- a/
bam2bcf.h
+++ b/
bam2bcf.h
@@
-26,6
+26,7
@@
typedef struct {
int depth, ori_depth, qsum[4];
int anno[16];
float p[25];
int depth, ori_depth, qsum[4];
int anno[16];
float p[25];
+ int mvd[3]; // mean variant distance, number of variant reads, average read length
} bcf_callret1_t;
typedef struct {
} bcf_callret1_t;
typedef struct {
@@
-33,6
+34,7
@@
typedef struct {
int n, n_alleles, shift, ori_ref, unseen;
int anno[16], depth, ori_depth;
uint8_t *PL;
int n, n_alleles, shift, ori_ref, unseen;
int anno[16], depth, ori_depth;
uint8_t *PL;
+ float vdb; // variant distance bias
} bcf_call_t;
#ifdef __cplusplus
} bcf_call_t;
#ifdef __cplusplus