projects
/
samtools.git
/ blobdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
raw
|
inline
| side by side
# Copyright review of the diff between 0.1.12 and 0.1.13.
[samtools.git]
/
bam2bcf.h
diff --git
a/bam2bcf.h
b/bam2bcf.h
index 26b022c08e89e3597bd6e400690d42bd7ecabe38..958567241936a4c54feae501c725ad77a6e3f1be 100644
(file)
--- a/
bam2bcf.h
+++ b/
bam2bcf.h
@@
-9,7
+9,9
@@
typedef struct __bcf_callaux_t {
int capQ, min_baseQ;
typedef struct __bcf_callaux_t {
int capQ, min_baseQ;
- int openQ, extQ, tandemQ;
+ int openQ, extQ, tandemQ; // for indels
+ int min_support; // for collecting indel candidates
+ double min_frac; // for collecting indel candidates
// for internal uses
int max_bases;
int indel_types[4];
// for internal uses
int max_bases;
int indel_types[4];