Imported Upstream version 0.1.12a

[samtools.git] / bam_index.c

diff --git a/bam_index.c b/bam_index.c
index f60a6f874b106f03c655d1207dddf21c4df7fc48..328f011c16ccf4a9a558702317ecdecfbcc5212a 100644 (file)
--- a/bam_index.c
+++ b/bam_index.c
@@ -212,7 +212,7 @@ bam_index_t *bam_index_core(bamFile fp)
        }
        if (save_tid >= 0) {
                insert_offset(idx->index[save_tid], save_bin, save_off, bam_tell(fp));
-               insert_offset(idx->index[save_tid], BAM_MAX_BIN, off_beg, off_end);
+               insert_offset(idx->index[save_tid], BAM_MAX_BIN, off_beg, bam_tell(fp));
                insert_offset(idx->index[save_tid], BAM_MAX_BIN, n_mapped, n_unmapped);
        }
        merge_chunks(idx);
@@ -698,6 +698,7 @@ int bam_fetch(bamFile fp, const bam_index_t *idx, int tid, int beg, int end, voi
        b = bam_init1();
        iter = bam_iter_query(idx, tid, beg, end);
        while ((ret = bam_iter_read(fp, iter, b)) >= 0) func(b, data);
+       bam_iter_destroy(iter);
        bam_destroy1(b);
        return (ret == -1)? 0 : ret;
 }