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Merge commit 'upstream/0.1.13'
[samtools.git]
/
bam_maqcns.c
diff --git
a/bam_maqcns.c
b/bam_maqcns.c
index 4fbc6c6d0cd14f54ac7d75f07f789cbdb73e4362..99310362afa0dfa216b7b678b04f2d69d2103150 100644
(file)
--- a/
bam_maqcns.c
+++ b/
bam_maqcns.c
@@
-22,8
+22,6
@@
typedef struct {
uint32_t c[4];
} glf_call_aux_t;
uint32_t c[4];
} glf_call_aux_t;
-char bam_nt16_nt4_table[] = { 4, 0, 1, 4, 2, 4, 4, 4, 3, 4, 4, 4, 4, 4, 4, 4 };
-
/*
P(<b1,b2>) = \theta \sum_{i=1}^{N-1} 1/i
P(D|<b1,b2>) = \sum_{k=1}^{N-1} p_k 1/2 [(k/N)^n_2(1-k/N)^n_1 + (k/N)^n1(1-k/N)^n_2]
/*
P(<b1,b2>) = \theta \sum_{i=1}^{N-1} 1/i
P(D|<b1,b2>) = \sum_{k=1}^{N-1} p_k 1/2 [(k/N)^n_2(1-k/N)^n_1 + (k/N)^n1(1-k/N)^n_2]