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# Use bzip2 compression for the binary packages and raised DH compat level.
[samtools.git]
/
bam_maqcns.h
diff --git
a/bam_maqcns.h
b/bam_maqcns.h
index 6cc5355fc2db2b1b19e6a3d2d330306a240fa15a..291ae533c3c38cd152b3c9c8fa8e820386a3718d 100644
(file)
--- a/
bam_maqcns.h
+++ b/
bam_maqcns.h
@@
-3,11
+3,15
@@
#include "glf.h"
#include "glf.h"
+#define BAM_ERRMOD_MAQ2 0
+#define BAM_ERRMOD_MAQ 1
+#define BAM_ERRMOD_SOAP 2
+
struct __bmc_aux_t;
typedef struct {
float het_rate, theta;
struct __bmc_aux_t;
typedef struct {
float het_rate, theta;
- int n_hap, cap_mapQ,
is_soap
;
+ int n_hap, cap_mapQ,
errmod, min_baseQ
;
float eta, q_r;
double *fk, *coef;
float eta, q_r;
double *fk, *coef;