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Merge commit 'upstream/0.1.7.dfsg'
[samtools.git]
/
bam_maqcns.h
diff --git
a/bam_maqcns.h
b/bam_maqcns.h
index 36704d7bce51104e1a8d73ed233f8ebd4b8ce582..fa5489d13caad7c5c20489091302bfb5b2a5799d 100644
(file)
--- a/
bam_maqcns.h
+++ b/
bam_maqcns.h
@@
-7,7
+7,7
@@
struct __bmc_aux_t;
typedef struct {
float het_rate, theta;
typedef struct {
float het_rate, theta;
- int n_hap, cap_mapQ;
+ int n_hap, cap_mapQ
, is_soap
;
float eta, q_r;
double *fk, *coef;
float eta, q_r;
double *fk, *coef;
@@
-24,7
+24,8
@@
typedef struct {
typedef struct {
int indel1, indel2;
typedef struct {
int indel1, indel2;
- int cnt1, cnt2, cnt_ambi, cnt_anti;
+ int cnt1, cnt2, cnt_anti;
+ int cnt_ref, cnt_ambi;
char *s[2];
//
int gt, gl[2];
char *s[2];
//
int gt, gl[2];