Merge commit 'upstream/0.1.18'

[samtools.git] / bam_reheader.c

diff --git a/bam_reheader.c b/bam_reheader.c
index bae97c796fc7a6116751ff809e9b9f28dc7d4063..0b5226705aee8044c26ec72212f1979d03805e49 100644 (file)
--- a/bam_reheader.c
+++ b/bam_reheader.c
@@ -22,10 +22,11 @@ int bam_reheader(BGZF *in, const bam_header_t *h, int fd)
        }
 #ifdef _USE_KNETFILE
        while ((len = knet_read(in->x.fpr, buf, BUF_SIZE)) > 0)
+               fwrite(buf, 1, len, fp->x.fpw);
 #else
        while (!feof(in->file) && (len = fread(buf, 1, BUF_SIZE, in->file)) > 0)
+               fwrite(buf, 1, len, fp->file);
 #endif
-               fwrite(buf, 1, len, fp->x.fpw);
        free(buf);
        fp->block_offset = in->block_offset = 0;
        bgzf_close(fp);