projects
/
samtools.git
/ blobdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
raw
|
inline
| side by side
bcftools.1 and samtools.1 were merged in upstream release 0.1.17.
[samtools.git]
/
bam_reheader.c
diff --git
a/bam_reheader.c
b/bam_reheader.c
index bae97c796fc7a6116751ff809e9b9f28dc7d4063..0b5226705aee8044c26ec72212f1979d03805e49 100644
(file)
--- a/
bam_reheader.c
+++ b/
bam_reheader.c
@@
-22,10
+22,11
@@
int bam_reheader(BGZF *in, const bam_header_t *h, int fd)
}
#ifdef _USE_KNETFILE
while ((len = knet_read(in->x.fpr, buf, BUF_SIZE)) > 0)
}
#ifdef _USE_KNETFILE
while ((len = knet_read(in->x.fpr, buf, BUF_SIZE)) > 0)
+ fwrite(buf, 1, len, fp->x.fpw);
#else
while (!feof(in->file) && (len = fread(buf, 1, BUF_SIZE, in->file)) > 0)
#else
while (!feof(in->file) && (len = fread(buf, 1, BUF_SIZE, in->file)) > 0)
+ fwrite(buf, 1, len, fp->file);
#endif
#endif
- fwrite(buf, 1, len, fp->x.fpw);
free(buf);
fp->block_offset = in->block_offset = 0;
bgzf_close(fp);
free(buf);
fp->block_offset = in->block_offset = 0;
bgzf_close(fp);