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Imported Upstream version 0.1.6~dfsg
[samtools.git]
/
bam_rmdup.c
diff --git
a/bam_rmdup.c
b/bam_rmdup.c
index 1fa6cad5d7582b9b7a1d148c47df4e00aa5b638e..5da946011f10ec72758c18cc10af75180a7d8f4e 100644
(file)
--- a/
bam_rmdup.c
+++ b/
bam_rmdup.c
@@
-128,7
+128,8
@@
int bam_rmdup(int argc, char *argv[])
{
bamFile in, out;
if (argc < 3) {
{
bamFile in, out;
if (argc < 3) {
- fprintf(stderr, "Usage: samtools rmdup <input.srt.bam> <output.bam>\n");
+ fprintf(stderr, "Usage: samtools rmdup <input.srt.bam> <output.bam>\n\n");
+ fprintf(stderr, "Note: Picard is recommended for this task.\n");
return 1;
}
in = (strcmp(argv[1], "-") == 0)? bam_dopen(fileno(stdin), "r") : bam_open(argv[1], "r");
return 1;
}
in = (strcmp(argv[1], "-") == 0)? bam_dopen(fileno(stdin), "r") : bam_open(argv[1], "r");