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bcftools.1 and samtools.1 were merged in upstream release 0.1.17.
[samtools.git]
/
bcftools
/
Makefile
diff --git
a/bcftools/Makefile
b/bcftools/Makefile
index fd2e2dfc954febe46bdc5081e9c5dd3ef7e09a07..9b6f8633101cab4ccd8697d489c36091cd808892 100644
(file)
--- a/
bcftools/Makefile
+++ b/
bcftools/Makefile
@@
-1,7
+1,7
@@
CC= gcc
CFLAGS= -g -Wall -O2 #-m64 #-arch ppc
DFLAGS= -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE
CC= gcc
CFLAGS= -g -Wall -O2 #-m64 #-arch ppc
DFLAGS= -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE
-LOBJS= bcf.o vcf.o bcfutils.o prob1.o em.o kfunc.o kmin.o index.o fet.o bcf2qcall.o
+LOBJS= bcf.o vcf.o bcfutils.o prob1.o em.o kfunc.o kmin.o index.o fet.o
mut.o
bcf2qcall.o
OMISC= ..
AOBJS= call1.o main.o $(OMISC)/kstring.o $(OMISC)/bgzf.o $(OMISC)/knetfile.o $(OMISC)/bedidx.o
PROG= bcftools
OMISC= ..
AOBJS= call1.o main.o $(OMISC)/kstring.o $(OMISC)/bgzf.o $(OMISC)/knetfile.o $(OMISC)/bedidx.o
PROG= bcftools
@@
-28,7
+28,7
@@
all:$(PROG)
lib:libbcf.a
libbcf.a:$(LOBJS)
lib:libbcf.a
libbcf.a:$(LOBJS)
- $(AR) -cru $@ $(LOBJS)
+ $(AR) -c
s
ru $@ $(LOBJS)
bcftools:lib $(AOBJS)
$(CC) $(CFLAGS) -o $@ $(AOBJS) -L. $(LIBPATH) -lbcf -lm -lz
bcftools:lib $(AOBJS)
$(CC) $(CFLAGS) -o $@ $(AOBJS) -L. $(LIBPATH) -lbcf -lm -lz