Imported Upstream version 0.1.12a

[samtools.git] / bcftools / bcf.c

diff --git a/bcftools/bcf.c b/bcftools/bcf.c
index fd5c0c9ae24971f15168f488452afe2077258dd0..6e45695cfb8c35a22dc4699728e445129293a699 100644 (file)
--- a/bcftools/bcf.c
+++ b/bcftools/bcf.c
@@ -181,7 +181,7 @@ int bcf_read(bcf_t *bp, const bcf_hdr_t *h, bcf1_t *b)
        }
        bgzf_read(bp->fp, b->str, b->l_str);
        l = 12 + b->l_str;
-       bcf_sync(b);
+       if (bcf_sync(b) < 0) return -2;
        for (i = 0; i < b->n_gi; ++i) {
                bgzf_read(bp->fp, b->gi[i].data, b->gi[i].len * h->n_smpl);
                l += b->gi[i].len * h->n_smpl;